BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315251

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53815.1 | Symbols:  | F-box family protein | chr1:20090249-...   265    5e-70


> AT1G53815.1 | Symbols:  | F-box family protein | chr1:20090249-20090962 
REVERSE LENGTH=714
Length=714

 Score =  265 bits (143),  Expect = 5e-70
 Identities = 237/281 (84%), Gaps = 11/281 (4%)
 Strand=Plus/Plus

Query  23   AAGAAACAGAATATTTTGATGC-GATCCATGTTGATCTCTTCACT-AGTACTATCTTGTC  80
            |||| | |||||| |||| | | ||||| |||||||||||||| | |||| |||||| ||
Sbjct  80   AAGACATAGAATACTTTGGT-CTGATCCCTGTTGATCTCTTCA-TCAGTAATATCTTATC  137

Query  81   GAAATTGCCGGTAAAGTCTTTAGCTCAGTGTCGTTGCGTATCCAAGCTCTGGTCGTCCAT  140
            || ||||||| | ||||||  |||| ||||||| |||||||| |||||||||||||||||
Sbjct  138  GAGATTGCCGCTGAAGTCTAAAGCTAAGTGTCGCTGCGTATCGAAGCTCTGGTCGTCCAT  197

Query  141  AATTCGCCGTCCATATTACAAC-ATGTTGTTCCCCATCAAGTCTCCGGATCCACCGCGGA  199
            ||||||||||||| |||||||| | ||||||||| |||||||| || | |||   |||||
Sbjct  198  AATTCGCCGTCCAAATTACAACCA-GTTGTTCCCGATCAAGTCCCCAGCTCC---GCGGA  253

Query  200  TCCTTTGGAGCATCGGAA-ATGCAGGAGGGTTGTTCTTCTACTCTTCACCTCAGCCTTGT  258
            ||||||  | ||||| || ||||||||   |||||||| ||||||||||||||||||   
Sbjct  254  TCCTTTTCACCATCG-AATATGCAGGAATCTTGTTCTTTTACTCTTCACCTCAGCCTCAC  312

Query  259  AACCCGGATGAGAACACGTCTCTTGTAGCCACACTTCATCA  299
            || |||||||||||| |||||||||||||||| ||||||||
Sbjct  313  AATCCGGATGAGAACTCGTCTCTTGTAGCCACCCTTCATCA  353



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36871863898


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5