BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315285
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1236 0.0
> AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain | chr1:22339809-22342297
FORWARD LENGTH=1114
Length=1114
Score = 1236 bits (669), Expect = 0.0
Identities = 814/881 (92%), Gaps = 22/881 (2%)
Strand=Plus/Plus
Query 1 ATGAAAGATAGAGAAAACGATGGAAATCTTGAGAGCAGAATCTTCGTTGGAGGATTGTCG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 87 ATGAAAGATAGAGAAAACGATGGAAATCTTGAGAGCAGAATCTTCGTGGGAGGGTTATCG 146
Query 61 TGGGATGTCACAGAGAGACAGCTTGAGAGTACTTTTGACCGCTATGGGAAAATCACTGAG 120
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 147 TGGGATGTCACAGAGAGACAGCTTGAGAGTACCTTTGACCGCTACGGGAAAATCACTGAG 206
Query 121 TGTCAGATTATGGTGGGGAAAGATACTGGCCGTCCACGTGGTTTTGGGTTTATTACATTC 180
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 207 TGTCAGATTATGGTGGGGAGAGATACTGGGCGTCCACGTGGTTTTGGGTTTATTACATTC 266
Query 181 ACTGATCGCCGAGGAGCTGATGATGCAATTAAGCACATGCATGGGAGGGAGTTGGGCGAT 240
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 267 ACTGATCGCAGAGGAGCTGATGATGCAATTAAGCACATGCATGGAAGGGAGTTGGGCAAT 326
Query 241 AGGGTCATCTCGGTGAACAAAGCTGAGCCCAAAGTTGGTGGAGATGATGTAGACCATTTA 300
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 327 AAGGTCATCTCCGTGAACAAAGCTGAGCCCAAAGTTGGTGGAGAAGATGTAGACCAATTA 386
Query 301 CATAAGGGTGGAGGCTACTCATCTCGAGGGAAGGGAAGCGAGGATGAGTGCTTTAAGTGC 360
| || ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 387 AAGAAAGGTGGAGGCTATTCATCTCGAGGGAAGGGAACCGAGGATGAGTGCTTTAAATGC 446
Query 361 GGACGCCCTGGTCATTGGGCTCGAGATTGCCCATCAGCTGGT-AGCGAAGGAGGACGGTT 419
||||||||||||||||||||||||||||||||||| ||||| | ||| ||| ||||||
Sbjct 447 AGACGCCCTGGTCATTGGGCTCGAGATTGCCCATCAACTGGTGA-CGATCGAGAACGGTT 505
Query 420 CAGAGTTTCCCTTGCGATGCGCTCTAG-ACTTGGAGAAATCGATGGACACCGAGATCGCT 478
||||||| ||||||||||||||||| | | ||||||| || |||||||||||||||||||
Sbjct 506 CAGAGTTCCCCTTGCGATGCGCTCTCGTA-TTGGAGACATAGATGGACACCGAGATCGCT 564
Query 479 ATGGAGATCGTGAGCTGGAG------CGTGAGCG------TGA------CCGCTACATGG 520
||||||||||||| |||||| || ||||| ||| |||||||||||
Sbjct 565 ATGGAGATCGTGATCTGGAGAGGGAGCGGGAGCGGGAGCGTGAGTTTGACCGCTACATGG 624
Query 521 ATGGACGCCGTGACCGAGATGGGGGACGATATAGCTACAGGGACCGCTTTGAGAGTGGAG 580
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 625 ATGGACGCCGTGACCGAGATGGGGGACGATATAGCTACAGGGACCGCTTCGACAGTGGAG 684
Query 581 ACAAGTATGAGACTCGTGATCACTATCCATTTGAGAGATACGCACCACCTGGAGACCGTT 640
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 685 ACAAGTATGAGCCTCGTGATCACTATCCATTTGAGAGATACGCACCACCAGGAGACCGTT 744
Query 641 TTGTGAGTGATAGGTATGGGATGCCTGAACATCATCTTGAGAATGAATATCGCGGGCGAG 700
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 745 TTGTGAGTGATAGGTATGGGATGCCTGAACATCATCTTGAGAATGAATATCGCGGGAGAG 804
Query 701 AGAGAAGCTATGACAGGGACAGATACGCAAGGGATACAAGTGATAGGTATGGAGCTATGG 760
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 805 AGAGAAGCTATGACAGGGACAGATACGCAAGGGATACAAGTGACAGATATGGAGATATGG 864
Query 761 GACCGATACGTGATGAGGGAAGACCCTATAGAAGCAGACCAGGTCCTTATGACCGTCCTA 820
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 865 GACCGATACGCGATGAGGGAAGACCCTACAGAAGCAGACCAGGTCCTTATGACCGTCCTA 924
Query 821 GCCGAGCTGGAGGCCGACCTTCGTCATATGAACGTTGGTAG 861
|||| |||||||| ||||||| ||||||||||||||||||
Sbjct 925 GCCGTCCTGGAGGCAGACCTTCATCATATGAACGTTGGTAG 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5