BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315293
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1088 0.0
AT1G19930.1 | Symbols: | Galactose oxidase/kelch repeat superf... 464 7e-130
> AT1G60570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:22311836-22312981 FORWARD LENGTH=1146
Length=1146
Score = 1088 bits (589), Expect = 0.0
Identities = 982/1164 (84%), Gaps = 57/1164 (5%)
Strand=Plus/Plus
Query 1 ATGAACGACGATGAAGAGCCACCACTGAAGAAGAATAAACTGCCA--A-TAGAACCAACC 57
|||| |||||||||||||||||| |||||||||||||| |||||| | ||||||||||
Sbjct 1 ATGAGCGACGATGAAGAGCCACCGCTGAAGAAGAATAAGCTGCCAGTAGAAGAACCAACC 60
Query 58 TTGAATCTTTCACTTCCAGAAGATTTGATAGTGAGTATCTTAGCCCGTGTCTCAAGATTT 117
|||| || |||||||||||| || |||||| |||||||||||||||| ||||| |||||
Sbjct 61 TTGATTCCTTCACTTCCAGAGGAGTTGATATTGAGTATCTTAGCCCGCGTCTCGAGATTG 120
Query 118 TCTTATCGAAATCTCTCCTTAGTCTGCAAGCGCTTCCACTGGCTCCTTACTTCAGGGGAG 177
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 121 TCTTATCGATCTCTCTCCTTAGTCTGCAAGCGCTTCCACTCGCTCCTTACTTCAGGAGAG 180
Query 178 CTTCACCGGATCCGGTCACTATCAGGTTGTACCGAGAATTGTCTCTATGTGTGCTTACGT 237
|| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 ATTTACCGGTTCCGGTCACTATCAGGTTATACCGAGAATTGTCTCTATGTGTGCTTACGT 240
Query 238 TTCTCTCATAATGACCATATCCCTCGCTGgaagaag--aag-aagaagaaTAAGTCAAGT 294
|||||||||| || || || || ||||||| | | | ||||||| |||||||||
Sbjct 241 TTCTCTCATACTGGCCGTAGCCATCGCTGGTTCATGCTTCGTGAGAAGAACAAGTCAAGT 300
Query 295 GGGTATGTTTTGGAAACAATCCC-ATTTCCCCATCCTCCTCCTTCCCACG-GTTGGGGTC 352
||||||||||||| | ||||||| |||| ||||| ||||| ||| |||| | | | ||
Sbjct 301 GGGTATGTTTTGGCACCAATCCCAATTT-CCCATTCTCCTTCTTTGCACGCG-TCGAGTA 358
Query 353 TCGTGGCGGTTGGTTCTAATATTTACAACATTGGCGGATCCATCTACGGTTGTCGCTCAA 412
||||||||||||||||||| || ||||| ||||||||| || | || || | ||
Sbjct 359 TCGTGGCGGTTGGTTCTAAAATCTACAAAATTGGCGGA---GTC-ATGGATG--GATC-- 410
Query 413 ATAGTGTCTCAATCCTAGACTGCTGGTCTAACACGTGGCTCAAAGCTCCAAGCATGCAGG 472
|||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 411 -TAGTGTTTCAATCCTAGACTGCTGGTCTCACAGGTGGCTCGAAGCTCCAAGCATGCAGA 469
Query 473 TAGATCGGTG-TCGCCCATCAGCCAATTTCCTTGATGGAAAGATATACGTAACAGGAGGC 531
| || ||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 470 TGGAACGG-GACCGCCCATCAGCCAATTTAATTGATGGAAAGATATACGTAACAGGAGG- 527
Query 532 CATG-C-C--A-GTTACAAAAATGCATCACACTATATGGAGGTTTTCGATCTGAAAACCA 586
| || | | | | | | | ||| ||||| | | ||||||||||||||||| ||||||
Sbjct 528 C-TGTCACAGAGGCTCCTACAATCCATCAAAGTGGATGGAGGTTTTCGATCTAAAAACCG 586
Query 587 AAACTTGGGAGCCTGTGTTGAGCAGTTCAGGCAGA---A---T-GA-CGTTAT-AT-AA- 635
|||||||||||||||| ||| || |||||| ||| | | || ||||| || ||
Sbjct 587 AAACTTGGGAGCCTGTATTGTGCCGTTCAGATAGATTGACGTTCGAGAGTTATCATGAAC 646
Query 636 -AACTAAGAACGTAGTT-GTTGATGGAAATCTATAC-GTTGTTGGG--AATAAGGGTGTT 690
|||||| ||| || || ||||||||||| |||||| || ||||| ||||||||||
Sbjct 647 GAACTAATAACTTA-TTGGTTGATGGAAAGCTATACATTTTTTGGGCTGATAAGGGTGTG 705
Query 691 GTTTACAACCCCAAGGATGATACATGGGATAGTTTAG--G-ACCGGAGATGAATTTAG-G 746
|||||||| |||||||||||||||||||||||||||| | |||||||||| || | | |
Sbjct 706 GTTTACAATCCCAAGGATGATACATGGGATAGTTTAGAAGTACCGGAGATGGATAT-GTG 764
Query 747 TTCGAAATGGTTTTCTTCTTGTGTGATAGAGAACGTGCTTTACT-ATTATTATTACGAAG 805
|| || || ||||| || |||||||||||||||||||||||| | ||| || ||||||||
Sbjct 765 TTTGACATTGTTTTATTGTTGTGTGATAGAGAACGTGCTTTA-TGATTTTTTTTACGAAG 823
Query 806 AA---GGTATCAAATGGTATGACACTAAGGCAAGATCCTGGAGAAGTTTGTTAAATGGTA 862
|| | |||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 824 AACTTGATATCAAATGGTATGACACTAAGGCAAGAACTTGGAGAAGTTTGTTGAATGGTA 883
Query 863 TGAGAAAACTGCCTAAGTTTGCTCGTCATGCCAATGTTAGGTTGGCGGATTATGGTGGGA 922
||||| |||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 884 TGAGAGAACTGCATAAGTTTGTTCGTCATGCCAGTGTTACGTTGGCGGATTATGGTGGGA 943
Query 923 AAATGGCACTTTTTTGGGACAAGTTTGTGGCTTCTGGTGGTGGTCGTGGCTATGAGAATA 982
|||||| | | |||||||| ||||||||||||||||||| ||||| ||||| | | || |
Sbjct 944 AAATGGTAATGTTTTGGGATAAGTTTGTGGCTTCTGGTGATGGTCTTGGCTTTCATAAAA 1003
Query 983 GGATGATTTGGTGTGCGATGATTGCACTTGAAAGAAGTTATAGAGGAGAGATTTGGGGGA 1042
|||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1004 CGATGATGTGGTGTGCGATGATTGCACTTGAAAGAAGTGATAGTGGAGAGATTTGGGGGA 1063
Query 1043 AGGTGGAGTGGTTTGATGCAGTGCTTCCAAATCCAATTCCTAAGGAATATG-ATTTTGAG 1101
|||| |||||||||| | ||||||||||||||| |||||| |||||||| |||| |||
Sbjct 1064 AGGTCGAGTGGTTTGGTCCAGTGCTTCCAAATCAAATTCCCCTGGAATATGCATTT-GAG 1122
Query 1102 TATGTCGGTTGTGTCAACGTTTGA 1125
|||||||||| |||||| ||||||
Sbjct 1123 TATGTCGGTTCTGTCAAAGTTTGA 1146
> AT1G19930.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:6917020-6918138 FORWARD LENGTH=1035
Length=1035
Score = 464 bits (251), Expect = 7e-130
Identities = 423/501 (84%), Gaps = 32/501 (6%)
Strand=Plus/Plus
Query 635 AAACTAAGAACGTAGTTGTTGATGGAAATCTATAC-GTTGT--TGGGAATAAGGGTGTTG 691
||||| | |||||||| ||||||||||| ||| || ||||| |||| |||||||||| |
Sbjct 557 AAACTGATAACGTAGTGGTTGATGGAAAGCTACACAGTTGTGGTGGGTATAAGGGTGTGG 616
Query 692 TTTACAACCCCAAGGATGATACATGGGATAGTTTAGGACCGGAGATGAATTTAGGTTC-G 750
|||||||||||| |||| || |||||||||||||||| | ||||||||||| || || |
Sbjct 617 CTTACAACCCCAATGATGGTAGATGGGATAGTTTAGGATCAGAGATGAATTT-GGGTCTG 675
Query 751 AAATGGTTTTCTTCTTGTGTGATAGAGAACGTGCTTTACTATTATTATTACGAA-GAAGG 809
||||||| ||| ||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 676 AAATGGTCTTCATCTTGTGTGATAGAGAACGTGATTTACTATTATTATCAC-AATGAAAA 734
Query 810 TATCAAATGGTATGACACTAAGGCAAGATCCTGGAGAAGTTTGTTAAATGGTATGAGAAA 869
||||||||||||||||||||||| |||||||||||||| |||| |||||| ||| |||
Sbjct 735 TATCAAATGGTATGACACTAAGGTAAGATCCTGGAGAACTTTG---AATGGTTTGA-AAA 790
Query 870 -ACTGCCTAAGTTTGCTCGTCATGCCAATGTTAGGTTGGCGGATTATGGTGGGAAAATGG 928
||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 791 CACTACCTAGGTTTGCTCGTTATGCCAATGTTAGGTTGGCAGATTATGGTGGGAAAATGG 850
Query 929 CACTTTTTTGGGACAAGTTTGTGGCTTCTGGTGGTGGTCGTGGCTATGAGAATAGGATGA 988
|||||||||||||||||||| || ||| || | | | | || ||||||||||||
Sbjct 851 CACTTTTTTGGGACAAGTTTA---CT---GGT--TG-T-G-G-CAATCAGAATAGGATGA 898
Query 989 TTTGGTGTGCGATGATTGCACTTGAAAGAAGTTATAGAGGA-GAGATTTGGGGGAAGGTG 1047
||||||||||||| ||||| ||||||||| | ||| | || |||||||||||||| ||
Sbjct 899 TTTGGTGTGCGATTATTGCTCTTGAAAGACGCAATA-ATGAAGAGATTTGGGGGAATGTC 957
Query 1048 GAGTGGTTTGATGCAGTGCTTCCAAATCCAA-TTCCTAAGGAATATG-ATTTTGAGTATG 1105
||||||| ||||||||||||||| ||| || |||||| || |||| || | |||||||
Sbjct 958 GAGTGGTCTGATGCAGTGCTTCCGCATC-AAGTTCCTATGGCCTATGTATGT-GAGTATG 1015
Query 1106 TCGGTTG-TGTCAACGTTTGA 1125
| | ||| |||||||||||||
Sbjct 1016 TTG-TTGCTGTCAACGTTTGA 1035
Score = 337 bits (182), Expect = 2e-91
Identities = 428/539 (79%), Gaps = 48/539 (9%)
Strand=Plus/Plus
Query 26 TGAAGAAGAATAAACTGCCAATAGAACCAACCTTGAATCTTTCACTTCCAGAA-GATTTG 84
||||||||||||| |||||| || || |||| | ||||||||||| || ||||||
Sbjct 2 TGAAGAAGAATAAGGTGCCAACAG----AA--TTGATTTTTTCACTTCCA-AATGATTTG 54
Query 85 ATAGTGAGTATCTTAGCCCGTGTCTCAAGATTTTCTTATCGAAATCTCTCCTTAGTCTGC 144
|||||| ||||||||||||||||| || || ||||| || |||||||||||||| |
Sbjct 55 TTAGTGAACATCTTAGCCCGTGTCTCGAGGTTGGATTATCCAATTCTCTCCTTAGTCTCC 114
Query 145 AAGCGCTTCCA-CT-GGCTCCTTACTTCAGGGGAGCTTCACCGGATCCGGTCACTA-TCA 201
||||| || || || || ||||||||| | ||||||| ||| || |||||||||| | |
Sbjct 115 AAGCG-TTTCAGCTCGG-TCCTTACTTTACCGGAGCTTTACCAGACCCGGTCACTAGT-A 171
Query 202 GGT-TGTACCGAGAATTGTCTCTATGTGTGCTTACGT-TTCTCTCATAATGACCATATCC 259
||| | ||||||||||||||| ||||||||||||| | | ||||| | ||||| |||||
Sbjct 172 GGTCT-TACCGAGAATTGTCTTTATGTGTGCTTAC-TGTCCTCTCGTGCTGACCGTATCC 229
Query 260 CTCGCTGg---aa--------gaaga---a--gaag--a-aga-a-T---AAGTCAAGTG 295
|| ||||| || | ||| | || | || | | ||||||||||
Sbjct 230 CTAGCTGGTTCAAGCTTTGTCGGAGACCTATCCTAGCCAGTGACACTAGGAAGTCAAGTG 289
Query 296 GGTATGTTTTGGAAACAATCCCATTTCCCCATCCTCCTCCTTCCCAC-GGTTGGGGTCTC 354
|||||||||||| |||||| ||| |||| ||| ||||||||| ||| || | |||||
Sbjct 290 GGTATGTTTTGGCAACAATACCAATTCCACATTCTCCTCCTTTGCACAGG-TCAAGTCTC 348
Query 355 GTGGCGGTTGGTTCTAATATTTACAACATTGGCGGATCCATCTACGGTTGTC-GCTCAAA 413
|||||||||||||||||||| || ||||||||||||||||||| | | | | |||
Sbjct 349 GTGGCGGTTGGTTCTAATATCTATAACATTGGCGGATCCATCTCCCAATCCCAG-TCATC 407
Query 414 TAGTGTCTCAATCCTAGACTGCTGGTCTAACACGTGGCTCAAAGCTCCAAGCATGCAGGT 473
|||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 408 TAGTGTCTCAATCCTAGACTGCTGGTCTCACACGTGGCTCGAAGGTCCAAGCATGCAGGT 467
Query 474 AGATC-GGTGTCGCCCATCAGCCAATTTCCTTGATGGAAAGATATACGTAACAGGAGGC 531
|| | || || ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 468 GGAGCGGGAGT-ACCCATCAGCCAGTTTACTTGATGGAAAGATATACGTAACAGGAGGC 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5