BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315325
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60060.1 | Symbols: | Serine/threonine-protein kinase WNK (... 1790 0.0
> AT1G60060.1 | Symbols: | Serine/threonine-protein kinase WNK
(With No Lysine)-related | chr1:22139184-22141790 FORWARD LENGTH=1464
Length=1464
Score = 1790 bits (969), Expect = 0.0
Identities = 1071/1119 (96%), Gaps = 11/1119 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAACATCTAAATCCATTAGCAGTGACTCATCTTCTTCAACACACACTAAGAAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 ATGGAAGAACATCTAAATCCATTAGCAGTGACTCATCTTCTTCAACACACACTAAGAAGC 158
Query 61 TTATGCATCCATGAGAATTCTCAATGGGTTTATGCTGTTTTCTGGAGGATCTTGCCCAGA 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 159 TTATGCATCCATGAGAACTCTCAATGGGTTTATGCTGTTTTCTGGAGGATCTTGCCTAGA 218
Query 121 AACTATCCACCTCCCAAATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGTAACAGG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 219 AACTATCCTCCTCCCAAATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGGAACAGG 278
Query 181 AGAAACTGGATCTTGGTTTGGGAAGATGGGTTTTGCAACTTTGCAGCTTCTGCCGCGGAA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 279 AGAAACTGGATCTTGGTTTGGGAAGATGGTTTTTGCAACTTTGCAGCTTCTGCCGCGGAA 338
Query 241 ATGAGCTCCGGCG-AGTGTAGTGGCGGCGGCGGTCGCTCAACGGGTTACGGAAATAGTGA 299
||||||||||| | || ||||||| ||||| ||| ||||| ||| ||| |||||||||||
Sbjct 339 ATGAGCTCCGGAGAAG-GTAGTGGTGGCGGTGGTGGCTCAGCGGCTTATGGAAATAGTGA 397
Query 300 TTTTCAACAATACCAAGGGCTTCAGCCTGAGTTGTTCTTCAAGATGTCTCATGAAATCTA 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 398 TTTTCAACAATACCAAGGGCTTCAGCCTGAATTGTTCTTCAAGATGTCTCATGAAATCTA 457
Query 360 CAATTACGGAGAAGGGTTGATAGGAAAAGTAGCTGCAGATCACAGTCACAAGTGGATTTA 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CAATTATGGAGAAGGGTTGATAGGAAAAGTAGCTGCAGATCACAGTCACAAGTGGATTTA 517
Query 420 TAAAGAACCTAATGACCAAGAGATTAACTTCTTATCTGCTTGGCACAATTCTGCTGACTC 479
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 518 TAAAGAACCTAATGACCAAGAGATTAACTTCTTATCTGCTTGGCATAATTCCGCTGACTC 577
Query 480 ATACCCTAGGACATGGGAAGCTCAGTTTCAGTCTGGTATCAAAACCATTGCCTTGATTTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 ATACCCTAGGACATGGGAAGCTCAGTTTCAGTCTGGTATCAAAACCATTGCCTTGATTTC 637
Query 540 TGTTCGAGAAGGTGTTGTCCAGTTAGGAGCTGTTCACAAGGTGATAGAGGATTTAAGCTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TGTTCGAGAAGGTGTTGTCCAGTTAGGAGCTGTTCACAAGGTGATAGAGGATTTAAGCTA 697
Query 600 TGTTGTGATGCTAAGAAAAAAGCTGAGCTATATAGAGAGCATCCCTGGAGTACTTCTTCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TGTTGTGATGCTAAGAAAAAAGCTGAGCTATATAGAGAGCATCCCTGGAGTACTTCTTCC 757
Query 660 TCATCCTTCTTCTTCCGGTTACCCTTTCATCAACGCTTCTCCTTCTGACACGTGGAATTT 719
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 758 TCACCCTTCTTCTTCTGGTTACCCTTTCATCAACGCTTCTCCTTCTGACACGTGGCATTT 817
Query 720 CCCAGGAGTCGCTCCTCTTCCGCATCAGCAGCATGAACACCAGTTTTATCACTCTGACCA 779
||| ||||||||||||| | ||||||||||| ||| |||||||||||||| ||||||||
Sbjct 818 CCCGGGAGTCGCTCCTC--C-GCATCAGCAGCCTGAGCACCAGTTTTATCATTCTGACCA 874
Query 780 CAACCACCGCTTCTTGATGGGCCATCACAACCAGCCACAAGCGGTAGTAGGAGGGGCTGC 839
|||||||||||| ||||| ||||| ||||||||||||||||| | ||||||||||||||
Sbjct 875 CAACCACCGCTTTTTGATAGGCCACCACAACCAGCCACAAGC--T-GTAGGAGGGGCTGC 931
Query 840 ACCGCCTCTACCACTTTCGATGAAGATAACGCCCTCAATGAGTAGCCTCGAGGCGCTTCT 899
|||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 932 ACCGCCTCTACCGCTTTCGATGAAGATAACACCGTCAATGAGCAGCCTCGAGGCGCTTCT 991
Query 900 CTCGAAGCTTCCGTCGGTTGTACCTCCGGCAACGCAGCCGGGGTACTACCCGTTTCACCA 959
||||||||| |||||||||||||||||||| || || || ||||||||||||||||||||
Sbjct 992 CTCGAAGCTCCCGTCGGTTGTACCTCCGGCGACACAACCAGGGTACTACCCGTTTCACCA 1051
Query 960 CAGTGCTAAAGAAGAAATGAGTCAAGAAGAACAAAACGATGCGTTTAGGGTTGAACGTAA 1019
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CAGTGCTAAAGAGGAAATGAGTCAAGAAGAACAAAACGATGCGTTTAGGGTTGAACGTAA 1111
Query 1020 TGATTTGGTGGGTGAGGGTAGtaataatcataatcataataat--t-acaatagtaataa 1076
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1112 TGATTTGGTGGGTGAGGGTAGTAATAATCATAATCATAATAATAATTACAATAGTAATAA 1171
Query 1077 tgatatgtataactatagcaataatTGCAGCAACAATAA 1115
|||||| ||||||||||||||||||||||||||||||||
Sbjct 1172 TGATATTTATAACTATAGCAATAATTGCAGCAACAATAA 1210
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1111 AATAAGATCGGTGGGTTTCTTAGTGAGGATTATTGA 1146
||||||||||||||||||||||||||||||||||||
Sbjct 1224 AATAAGATCGGTGGGTTTCTTAGTGAGGATTATTGA 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5