BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315326
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60050.1 | Symbols: | Nodulin MtN21 /EamA-like transporter ... 1869 0.0
> AT1G60050.1 | Symbols: | Nodulin MtN21 /EamA-like transporter
family protein | chr1:22121550-22123702 REVERSE LENGTH=1125
Length=1125
Score = 1869 bits (1012), Expect = 0.0
Identities = 1088/1125 (97%), Gaps = 3/1125 (0%)
Strand=Plus/Plus
Query 1 ATGGGATTAATGGATACAAGATGGGAAACCATAGTTCCATTTACTGTTATGGCGTTGATG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGGATTAATGGATACAAGATGGGAAACCATAGTTCCATTTATTGTTATGGCGTTGATG 60
Query 61 GAGGCATGTACCATTGCACTCACCATCTTGGCTAAGACCTCACTGACTGGTGGCATGAGC 120
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 GAGGCATGTACCATTGCACTCACCATCTTGGCTAAGACCGCACTGACCGGTGGCATGAGC 120
Query 121 CCTTTTGTGTTCATCGTCTACACCAACGCTCTTGGCTCTCTCCTTCTCCTCCCTTACTCT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTTCGTGTTCATCGTCTACACCAACGCTCTTGGCTCTCTCCTTCTCCTCCCTTACTCT 180
Query 181 TTCTACTTCCATAGAGATGAAAGCGACGATGAACCCTTCCTCACGAAACCTTCCCTTGTT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTACTTCCATAGAGATGAAAGTGACGATGAACCCTTCCTCACGAAACCTTCCCTTGTT 240
Query 241 CGAATCTTCCTACTCGGTTTTACAGGGGTGTTTTTGTTCCAAAACATGGCATTTTTGGGG 300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CGTATCTTCCTACTCGGTTTTACAGGGGTGTTTTTGTTCCAGAACATGGCATTTTTGGGG 300
Query 301 CTAAGTTATAGCTCTCCAATTGTGGTATGTGCCATGGGCTTGCAATCACCTGCTTTCTCC 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CTAAGTTATAGCTCTCCAATTGTGGTATGTGCCATGGGCTTGCAGTCACCTGCTTTCTCC 360
Query 361 TTCTTGCTATCTCTTGCTCGCGG---GGAAGGAGGGTTAGGATGGGCAAGTAAGAGAACA 417
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTGCTATCTCTTGCTCTTGGTAAGGAAGGAGGGTTAGGATGGGCAAGTAAGAGAACA 420
Query 418 AAAGGAAGAGTGATAGGCACGTTGATATGCTTCACAGGAGCCTTTGTTGAAGTTATTTAC 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 AAAGGAAGAGTGATAGGCACGTTGATATGTTTCACAGGAGCCTTTGTTGAAGTTATTTAC 480
Query 478 TTAGGCCCTTTTATAAGACCTTCTCATCCTTCATCCCCAAACTCCAATTTCCTTGCTACA 537
||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 481 TTAGGACCTTTTATAAGACCTTCTCCTCCTTCATCCCCAACCTCCAATTTCCTTACTACA 540
Query 538 ATCTCACACTATTTAACTTTCTTCAAAAATTCTGACAATTGGGTTCTCGGCTCTCTCCTC 597
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 ATCTCACACTACTTAACTTTCTTCAAAAATTCTGACAATTGGGCTCTCGGCTCTCTCCTC 600
Query 598 CTCGCATGCGCCACGCTCTCAATCTCCATTTGGAATATTATACAGTTGGATACAGTCCAA 657
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTGCATGCGCCACGCTCTCCATCTCCATTTGGAATATTATACAGTTGGATACAGTCCAA 660
Query 658 AAATATCCTCAAGTGATGAAAGTAGTGTCTGCCTATAGCTTAGCTGGGACACTCCAATGT 717
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 AAATATCCTCAAGTGATGAAAGTAGTGTCTGCCTATAGTTTAGCTGGGACACTCCAATGT 720
Query 718 GCAATCTTCTCAGCGTTCATGGAGCCAGACCTAAGTGCATGGAAACTCAAACTTAACATG 777
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 GCAATCTTCTCAGCGTTCATGGAGCCAGACCTAAGTGCATGGGAACTCAAACTTAACATG 780
Query 778 GACTTATATCTCATTATCGCCACGGGGATATTTGGGAGCATAATCAGAACAAGTGTTCAA 837
||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 GACCTATATCTCATTATTGCCACGGGAATATTTGGGAGCATAATCAGAACAAGTGTTCAA 840
Query 838 GTGAAGTGCTCAAAAATGAAGGGGCCTTATTATGTGCCACTCTTTAAGCCATTTGGGATC 897
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 GTGAAGTGCTCCAAAATGAAGGGGCCTTATTATGTGCCACTCTTCAAGCCATTTGGGATC 900
Query 898 CTTTGGGCTTCCATTTTTGGCACAAGCTTCTTTGTCAATAGTCTTCACTATGGAAGTGTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTTGGGCTTCCATTTTTGGCACAAGCTTCTTTGTCAATAGTCTTCACTATGGAAGTGTG 960
Query 958 TTAGGAGCTGCAATAGCAGGAACTGGATATCTATTGATAATGTGGAGTCAAGTTCAAAAA 1017
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTAGGAGCTGCTATAGCAGGAACTGGATATCTATTGATAATGTGGAGTCAAGTTCAAAAA 1020
Query 1018 GAAGATCAAAACGAAATGGCGGAGAAAAACGATAATCATCAATTGGATTCAGATGAACAG 1077
|| |||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATGATCCAAATGAAACGGTGGAGAAAAACGATAATCATCAATTGGATTCAGATGAACAG 1080
Query 1078 ACAACTCCACTTTTGCTCGCGAATGATGATTTTGATCAAGTATAA 1122
||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1081 ACAACTCCACTTTTGCTCGCGAATGGTGATTTTGATCAAGTTTAA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5