BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315354
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59660.1 | Symbols: | Nucleoporin autopeptidase | chr1:2192... 649 0.0
AT1G10390.1 | Symbols: | Nucleoporin autopeptidase | chr1:3407... 174 8e-43
> AT1G59660.1 | Symbols: | Nucleoporin autopeptidase | chr1:21924693-21929424
FORWARD LENGTH=3185
Length=3185
Score = 649 bits (351), Expect = 0.0
Identities = 513/585 (88%), Gaps = 36/585 (6%)
Strand=Plus/Minus
Query 82 AAGGTAGATTGTGTAGAACCAAAGGAACTGCTACCAAATGCTGAGGTAGACTGTCCAAAA 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 AAGGAAGATTGTGTAGAACCAAAGGAACTGCTACCAAATGCTGAGGTAGACTGTCCAAAA 855
Query 142 GCTGGGGAAGAACCGAAATTAAAAGATGGGGTACTTGATGCCCCAAAGGCAGGAGCAGGA 201
||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 854 GCTGGGGAAGAACCGAAATTAAAAGATGGGGAACTTGATGCCCCAAAGGCAG-A--AG-- 800
Query 202 GTGTTAGATGCCCCAAACGCAGGAGTGCTTGATGCACCAAAAGCACCTCCAGAACTGAAG 261
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 799 -TGTTAGATGCCCCAAACGTAGGAGTGCTTGATGAACCAAAAGCACCTCCAGAACTGAAG 741
Query 262 GCATTGTTACCAAATGCATTGCCAGAGCTACCAAAGGCTGGAGCAGGTGACACGCCAAAT 321
| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 740 GTATTGTTGCCAAATGCATTGCCAGAGCTACCAAAGGCTGGAGCAGGTGACGCACCAAAT 681
Query 322 GCAGGTGAGCTCGAGGAGCCGAATGAAGGAGTAGTTGCAGCACCAAAAGCAGGTGTGTTA 381
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||
Sbjct 680 GCAGGTGAGCTCGAGGAGCCGAATAAAGGAGTACTTGAAGCACCAAAAGCAGGCGTGTT- 622
Query 382 T-TGGAGCCAAAGGCAGACGTGCTTGATGCACCAAACCCAGGTGTGCTAGTGGCACCAAA 440
| ||||||||||||||| |||||||||||| |||||||||||||||||| || |||||||
Sbjct 621 TGTGGAGCCAAAGGCAGGCGTGCTTGATGCCCCAAACCCAGGTGTGCTACTGCCACCAAA 562
Query 441 TCCGGGTGTGCTTGTGGCACCAAACCCGGGTGTGCTTGTGGCTCCAAACGCGGAAGTGTT 500
|| | |||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 561 CCCTGTTGTGTTTGTGGCACCAAATCCGGGTGTGTTTGTGGCTCCAAACCCGGAAGTGTT 502
Query 501 TGAGGCGCCAAATGC-GGAAGTGTTTGAGGCGCCAAATGC-GGAAGTGTTTGAGGCACCA 558
|||| | ||||| || || ||| | ||||| ||||| || || ||| |||||||||||
Sbjct 501 TGAGACACCAAAGGCAGGC-GTGCTAGAGGCACCAAAGGCAGGC-GTGGTTGAGGCACCA 444
Query 559 AAGGCAGGCGTGCTAGAGGCACCAAAAGGTGTAGACGAACCAAAAGTGCTGTTTCCAAAG 618
|| ||| || | || || | || | |||||||||||||||||||
Sbjct 443 AA---AGGTGT--T-GA------------TG-A-AC---C-AAAAGTGCTGTTTCCAAAG 408
Query 619 GCAGGCTGTGATTGCTGTGTGGTGCTTCCGAAAGGACTTGACTGA 663
|||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 407 GCAGGCTGTGATTGTTGTGTGGTGCTTCCAAAAGGACTTGACTGA 363
> AT1G10390.1 | Symbols: | Nucleoporin autopeptidase | chr1:3407024-3412843
REVERSE LENGTH=3776
Length=3776
Score = 174 bits (94), Expect = 8e-43
Identities = 207/262 (79%), Gaps = 6/262 (2%)
Strand=Plus/Minus
Query 405 TGATGCACCAAACCCAGGTGTGCTAGTGGCACCAAATCCGGGTGTGCTTGTGGCACCAAA 464
||| || ||||| |||||||| | ||||| ||||| ||| | | ||| |||||| ||
Sbjct 1024 TGACGCGCCAAATGCAGGTGTGTTTGTGGCGCCAAAGGAGGGAGAGTTTGAGGCACCGAA 965
Query 465 CCCGGGTGTGCTTGTGGCTCCAAACGC-GGAAGTGTTTGAGGCGCCAAATGCGGAAGTGT 523
| || ||| ||||||| ||||| || || ||| |||| || ||||| | || |||
Sbjct 964 GGCAGGCGTGTTTGTGGCACCAAAGGCAGG-CGTGCTTGATGCACCAAACGAGGGTGTGC 906
Query 524 TTGAGGCGCCAAATG-CGGAAGTG-TTTGAGGCACCAAAGGCAGGCGTGCTAGAGGCACC 581
||| ||||||||| | || ||| || || || ||||||||||||||| ||| ||||||
Sbjct 905 TTGTGGCGCCAAAAGAAGG-CGTGCTTGGA-GCGCCAAAGGCAGGCGTGTTAGTGGCACC 848
Query 582 AAAAGGTGTAGACGAACCAAAAGTGCTGTTTCCAAAGGCAGGCTGTGATTGCTGTGTGGT 641
||||||||||||||||||||||| | |||||||||| ||||| || |||||||| ||||
Sbjct 847 AAAAGGTGTAGACGAACCAAAAGAGGTGTTTCCAAATGCAGGTTGGGATTGCTGCGTGGA 788
Query 642 GCTTCCGAAAGGACTTGACTGA 663
| |||| |||||| ||||||||
Sbjct 787 GTTTCCAAAAGGATTTGACTGA 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5