BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315379

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G58460.1 | Symbols:  | unknown protein; Has 35 Blast hits to...   433    8e-121


> AT1G58460.1 | Symbols:  | unknown protein; Has 35 Blast hits 
to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:21721404-21722429 FORWARD 
LENGTH=534
Length=534

 Score =  433 bits (234),  Expect = 8e-121
 Identities = 317/354 (90%), Gaps = 18/354 (5%)
 Strand=Plus/Plus

Query  1    ATGGATTTCTCGGATTTAAATGATAGCGATGCGGGAGATTCAGGTTGGACAATGTACTTA  60
            |||||||||||||||||| || | || ||||| |||||||||||||||||||||||||||
Sbjct  1    ATGGATTTCTCGGATTTAGATTACAGTGATGCTGGAGATTCAGGTTGGACAATGTACTTA  60

Query  61   GACCATTCTTCTTCTGTTTCACTTCATCATTTTGATTATCACAATGGAGACACAAAACAA  120
            | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   GGCCACTCTTCTTCTGTTTCACTTCATCATTTTGATTATCACAATGGAGAAACAAAACAA  120

Query  121  GAACATGATGATGATTCTTCGATGGTGTCGGATGCATCTTCCGGGCCTCCATATTATTGC  180
            ||||||||||| || ||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct  121  GAACATGATGAAGACTCTTCAATGGTGTCTGATGCATCTTCTGGACCTCCATATTATTGC  180

Query  181  GAAGAGACCGTCCCTGAAGATGTTCTCCAACAAAACACGCAATATTGGTGcaagagcaag  240
            ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct  181  GAAGAGACCGTCCATGAAGATCATCTCCAACAAAACACGCAATATTGGTGCAAGAGCAAG  240

Query  241  agcaagatcaagaacaagaacaagaacaagaacaagaacaagaagaaggttcatgaagaa  300
            |||||||  |    ||||||||| || |    ||||||   ||||  | |||||||||||
Sbjct  241  AGCAAGA--A----CAAGAACAA-AA-A----CAAGAA---GAAG--G-TTCATGAAGAA  282

Query  301  caagGATATAGTGAGAGATTTAATTCTTCCCTTGATGACACAGCTAGTTCATTG  354
            |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct  283  CAAGGATATAGTGAGAGATTCAATTCTTCCTTTGATGACACAGCTAGTTCATTG  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5