BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315392
Length=4257
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58050.1 | Symbols: | RNA helicase family protein | chr1:21... 3229 0.0
AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:21... 2134 0.0
> AT1G58050.1 | Symbols: | RNA helicase family protein | chr1:21478590-21487839
REVERSE LENGTH=4254
Length=4254
Score = 3229 bits (1748), Expect = 0.0
Identities = 1980/2091 (95%), Gaps = 20/2091 (1%)
Strand=Plus/Plus
Query 1030 CAAGAATCAGTTGTCTCGAATGATAGTTTAGATGGCTTGGACCTTGGTGATTTGTTCGTA 1089
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 988 CAAGAATCAGTTGTCTCGAATGATAGTTTAGATGACTTGGACCTTGGCGATTTGTTCG-A 1046
Query 1090 -GAAGATGTTCCGCCTTATGTACCTTCTTCCCATGAAATCCTGGAATTACAGAAGAAGGA 1148
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1047 CGAAGATGTTCCGCCTTATGTACCTTCTCCCCATGAACTCCTGGAATTACAGAAGAAGGA 1106
Query 1149 AATTATGAGAGAACTATGCAATGAGAAAAATCTTACGAAACTAAA-GGT-T-T--TA-CA 1202
|||||||||||||||||||||||||||| |||||||||||||||| ||| | | | |
Sbjct 1107 AATTATGAGAGAACTATGCAATGAGAAACATCTTACGAAACTAAACGGTATCTGGAAGAA 1166
Query 1203 GGGTGAAGCGCAAAAGATCCCAAAGGCATTGCTCCATCAGCTGTGTCAAAGGTCAGGGTG 1262
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1167 GGGTGAAGCGCAAAAGATCCCGAAGGCATTGCTCCATCAGTTGTGTCAAAGGTCAGGGTG 1226
Query 1263 GGTAGCACCAAAGTTCAATAAAGTAACTGGGGAAGGAAGCAACTTCTCATATACCATAAG 1322
| |||||||||||||||||||||| |||||||||||||| |||||||||||||| | |||
Sbjct 1227 GATAGCACCAAAGTTCAATAAAGTGACTGGGGAAGGAAGAAACTTCTCATATACTACAAG 1286
Query 1323 TGTTATGCGTAAATCTAGTGGATTTGGTAAAAGCAGACAAGCTGGGGGTCTGGTAACTAT 1382
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1287 TGTTATGCGTAAATCCAGTGGATTTGGTAAAAGCAGACAAGCCGGGGGTCTGGTAACTAT 1346
Query 1383 TCAACTTCCTCATCAAGTTGAGGATTTTGAATCCATCCAGGATGCACAAAACAGAGTTGC 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TCAACTTCCTCATCAAGTTGAGGATTTTGAATCCATCCAGGATGCACAAAACAGAGTTGC 1406
Query 1443 GGCATTTGCTCTCCATAAGCTATTTTCTGATTTGCCTGTTCACTTTGCAATTACTGAACC 1502
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1407 GGCATTTGCTCTCCATAAGCTATTCTCTGATTTGCCTGTTCACTTTGCAATTACTGAGCC 1466
Query 1503 TTATGCCTCTCTAGTTTTGATCTGGAAACAAGAGGAATCGTTAGGTATACCAACCAGAGA 1562
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||
Sbjct 1467 TTATGCCTCTCTAGTTTTGATCTGGAAACAAGAGGAATCATTAGGTATAACAAGCAGAGA 1526
Query 1563 AGAAG-AACGAAGAGCAAAATTTGTTGAAAGCTTGCTTGAGGCAGACAATTTCAGCTTGA 1621
||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 AGA-GCAAAGAAGAGAAAAATTTGTTGAAAGCTTGCTTGAGGCAGACAATTTCAGCTTGA 1585
Query 1622 CCACTTCTTCGTGTGGCATACAAAATGCACTTCCAATGGTAGACTCCTGTGTCAAAGAGA 1681
| ||| ||||| | |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1586 CTACTACTTCGAGAGGCATACACAGTGCACTTCCAATGGTAGACTCCTGTGTCAAAGAGA 1645
Query 1682 ACGATGACTTGGATGTTGTCAAATCTAACCATAGAGCTAAAAGAAACTTTTCCATGGAAA 1741
| ||||||||||||||||||||||||||||| ||||| | |||||||| |||||||| |
Sbjct 1646 ATGATGACTTGGATGTTGTCAAATCTAACCACAGAGCCAGAAGAAACTCTTCCATGGCAG 1705
Query 1742 CTGAATGTTCTTCTCTCAAACAAAAACAAGAAAACAAGAAGAAGATGCCGAAGTACAAGG 1801
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1706 CTGAATGTTCTTCTCTCAAACAAAAACAAGAAAACAAGAAGAAGATGCAGAAGTACAAGG 1765
Query 1802 AAATGTTAAAAACTAGAGCTGCTCTTCCTATATCAGAAGTGAAGAAGGATATACTGCAGA 1861
| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1766 ACATGTTGAAAACTAGAGCTGCTCTTCCTATATCAGAAGTGAAAAAGGACATACTGCAGA 1825
Query 1862 AGCTTAAAGAAAAAGATGTCTTGGTGGTATGCGGAGAAACAGGCTCCGGAAAGACTACAC 1921
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1826 AGCTGAAAGAAAAAGATGTCTTGGTGGTATGCGGAGAAACTGGTTCCGGAAAGACTACAC 1885
Query 1922 AGGTTCCTCAATTTATACTGGATGATATGATCGACTCGGGGCATGGTGGATACTGTAATA 1981
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1886 AGGTTCCTCAATTTATACTGGATGATATGATCGATTCAGGGCATGGTGGATACTGTAATA 1945
Query 1982 TTATATGCACACAACCTCGGGCTATCTCTGTTGCTCAAAGAGTTGCTGATGAGCGCTGTG 2041
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1946 TTATATGCACACAACCTCGGGCTATCACTGTTGCTCAAAGAGTTGCTGATGAGCGCTGTG 2005
Query 2042 AACCTCCTCCAGGCTTTGATGATTCTTTGGTTGCTTATCAAGTTCGTCATCAAAATGCAA 2101
|||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||
Sbjct 2006 AACCTCCTCCAGGCTTCGACAACTCTGTGGTTGCTTATCAAGTTCGTCATCAAAATGCAA 2065
Query 2102 GGAGTGACAAGACAAGGCTGCTGTTTTGTACTACAGGAATTCTCCTGAGAAAACTTGTGG 2161
||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 2066 GGAGTGATAAGACAAGGCTGCTGTTTTGTACTACTGGAATCCTACTGAGAAAACTTGTGG 2125
Query 2162 GGGATAAGACCTTGAAAGATGTTACACATATTATAGTCGATGAAGTGCATGAGCGGTCTC 2221
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 GGGATACGACCTTGAAAGATGTTACACATATTATAGTCGATGAAGTGCATGAGCGGTCTC 2185
Query 2222 TTATGGGTGATTTTCTTCTCATTATTTTGAAGATCTTGATTGAGAAGCAATCCTGGGATA 2281
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2186 TTATGGGTGATTTTCTTCTCATTATTTTGAAGAGCCTGATTGAGAAGCAATCCTGGGATA 2245
Query 2282 ATGCATTACCTAAACTGAAAGTTATCCTTATGTCCGCTACTGTTGATGCACATCAGTTCT 2341
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 ACGCATTACCTAAACTAAAAGTTATCCTTATGTCCGCTACTGTTGATGCACATCAGTTCT 2305
Query 2342 CAAGATATTTTGGTCAATGTCCTATAATTACTGCTCAAGGACGAACTCACCCGGTTACTA 2401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2306 CAAGATATTTTGGTCAATGTCCTATAATTACTGCTCAAGGACGAACTCACCCGGTTACCA 2365
Query 2402 CTTACTTTCTGGAGGACATTTATGAGAGGACTAAGTACCTTCTGGCTTCAGATTCACCTG 2461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 CTTACTTTCTGGAGGACATTTATGAGAGGACTAAGTACCTTCTGGCTTCAGATTCACCTG 2425
Query 2462 CTGCTCTAAGTTCTGATGCATCCATTACAGACGAGCTTGGTTCTGTAAACGTCCGTAGGG 2521
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2426 CTGCTCTAAGTTCTGATACATCCATTACAGACAAGCTTGGTTCTGTAAACGTCCCTAGGG 2485
Query 2522 GGAAAA-GAATCTTATGTTGGCTGGCTGGGGAGACAGTTATTTGGTTTCAGAGGACGGTC 2580
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2486 GGAAAAAGAACCTTATGTTGGCTGGCTGGGGAGACAGTTATTTGGTTTCAGAGGACAGTC 2545
Query 2581 TTAACTCGTCTTACGATTCCA--AAA-AGGTTA-AATGAGGATATTATTGACTATGAGCT 2636
||||| ||||||||||||||| ||| | || || | | | || |||||||||| ||
Sbjct 2546 TTAACACGTCTTACGATTCCATTAAATATATTGCAA-GTGC-TGTTGTTGACTATGATCT 2603
Query 2637 TCTTGAAGAGTTGATATGCCACATTGATGACACTTGTGAGGAAGGAGCCATTCTTGTGTT 2696
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2604 TCTTGAAGAGTTGATATGTCACATTGATGACACTTGTGAGGAAGGAGCCATTCTTGTGTT 2663
Query 2697 TTTGCCTGGAATGGCAGAAATCAACATGCTACTCAATAGGTTATCTGCTTCCTATCATTT 2756
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2664 TTTGCCTGGAATGTCAGAAATCAACATGCTACTCAATAGGTTAGCTGCTTCCTATCGTTT 2723
Query 2757 TCGTGGACCTTGTGGAGATTGGCTTCTTCCTCTACATTCTTCTATTGCATCTACAGAACA 2816
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2724 TCGTGGAGCTTCTGGAGATTGGCTTCTTCCTCTACATTCTTCTATTGCATCTACAGAACA 2783
Query 2817 GAGAAAAG-TGTTTCTGCGCCCCCCTAAAGGCATAAGGAAGGTTGTCATAGCTACAAATA 2875
|| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2784 GA-AAAAGGTGTTTCTGCGCCCCCCTAAAGGCATACGGAAGGTTATCATAGCTACAAATA 2842
Query 2876 TTGCCGAGACCAGTATAACAATTGAGGATGTGGTTTATGTGATTGACAGTGGAAAACACA 2935
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2843 TTGCCGAGACCAGTATAACAATTGAGGATGTGGTTTATGTGATTGATAGTGGAAAACACA 2902
Query 2936 AGGAAAATCGCTATAATCCACAGAAGAAATTGTCAAGCATGGTGGAAGATTGGGTATCTA 2995
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2903 AGGAAAATCGCTATAACCCACATAAGAAATTGTCAAGCATGGTGGAAGATTGGGTATCCA 2962
Query 2996 AAGCAAATGCAAGACAAAGAATGGGAAGAGCTGGACGTGTCAAACCTGGACATTGCTTTT 3055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2963 AAGCAAATGCAAGACAAAGAATGGGAAGAGCTGGACGTGTCAAACCTGGACATTGCTTTT 3022
Query 3056 CATTGTACACACGTCATAGGTTCGAGAAGCTCATGCGTCCCTATCAGAGTT 3106
|||| ||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 3023 CATTATACACTCGCCATAGGTTCGAGAAGCTCATGCGTCCCTATCAG-GTT 3072
Score = 1736 bits (940), Expect = 0.0
Identities = 1088/1160 (94%), Gaps = 7/1160 (1%)
Strand=Plus/Plus
Query 3101 AGAGTTGTGTTTACATATCAAATTACTTGGCTTGGGTCACATTAAGCCGTTTCTGTCCAA 3160
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3099 AGAGCTGTGTTTACATATCAAATTACTTGGCTTGGGTCAAATTAAGCCGTTTCTGTCCAA 3158
Query 3161 GGCAAGCTCTGGAACCTCCAAGTGAAAGTGCTATAAACTCTGCAATTTTATTGTTGCAAA 3220
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 3159 -G---GCTTTGGAACCTCCGAGTGAAAGTGCTATAAACTCTGCAATTTTATTGTTGCACA 3214
Query 3221 AGGTCGGTGCTCTTGAAGGGGACGAAGAGTTGACACCACTAGGACATCATTTAGCAAAAC 3280
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3215 AGGTCGGCGCTCTTGAAGGGGACGAAGAGTTGACACCACTAGGACATCATTTAGCAAAAC 3274
Query 3281 TTCCTGTTGATTTGTTGATTGGAAAGATGCTGTTATATGGTGGCATTTTTGGTTCCTTAT 3340
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3275 TTCCTGTTGATTTGTTAATTGGAAAGATGCTGTTATATGGTGGCATTTTTGGTTGCTTAT 3334
Query 3341 CACCTATTCTCTCGATTGCTGCTTTCTTGA---GCTGCAAATCGCCATTTGTATATTCCA 3397
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 3335 CACCTATTCTCTCGATTGCTGCTTTCTTGAGCTGCTGCAAATCGCCGTTTGTATATGCCA 3394
Query 3398 AAGATGAGCAAAATGTCGATCGCGTGAAACTTGCTCTTTTGTCTGATAAGCTGGAGAGTT 3457
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 3395 AAGATGAGCAAAATGTGGACCGGGTGAAACTTGCTCTTTTGTCTGATAAGCTGGAGAGTT 3454
Query 3458 CGAGTAATTTAAACAACAATGACAGACAATCTGATCACCTCCTTGTGGTGGTTGCATATG 3517
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 3455 CGAGTAATTTAAACAACAATGATAGACAATCTGATCACCTCCTTATGGTGGTTGCATATG 3514
Query 3518 AGAAATGGGTGAAGATACTGCATGAGCAAGGATTTAAAGCTGCAGAGAGGTTCTGTGAAT 3577
| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 3515 AAAAATGGGTGAGGATACTGCATGAGCAAGGATTTAAAGCTGCAGAGAGTTTCTGTGAGT 3574
Query 3578 CAAAGTTTTTGAACAGCTCAATGATGCAGACGATAAGAGACAGGAGAGTAGAGTTTGGCT 3637
||||||||||||| |||||| |||||| || ||| ||||| ||||||||||||||||||
Sbjct 3575 CAAAGTTTTTGAATAGCTCAGTGATGCGGATGATGAGAGAGAGGAGAGTAGAGTTTGGCA 3634
Query 3638 TTTTGCTTGCCGACATCGGGCTCATCAATCTTCCTAAAGGCGAGGGGAGAAGGAAGGAGA 3697
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3635 TGTTGCTTGCCGACATCGGGCTCATCAATCTTCCTAAAGGCAAGGGGAGAAGGAAGGAGA 3694
Query 3698 ATCTTGATGTTTGGTTTTCTGACAAAACTCAACCTTTCAATATGTATTCACAAGAACCTG 3757
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3695 ATTTTGATGTTTGGTTTTCTGACAAAACTCAACCTTTCAATATGTATTCACAAGAACCTG 3754
Query 3758 AAGTTGTTAAGGCTATTTTATGCGCGGGACTATGTCCTAATATTGCAGAGGGATTAGTTA 3817
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3755 AAGTTGTTAAGGCTATATTATGCGCGGGACTATGTCCTAATATTGCAGAGGGATTAGTTA 3814
Query 3818 ACCGTTTAACAAAGCCAGCAAAAGAAACAGAACGTTATGTAGTATGGCATGATGGCAAAA 3877
||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||
Sbjct 3815 ACCGTTTAACAAAGCCAGCGGAAGAAACACAGCGTTATGCAGTATGGCATGATGGCAAAA 3874
Query 3878 GAGAAGTCCATATCGATCGAACCTCTATAAACAAAAACTGCAAAGCGTTTCAATATCCTC 3937
|||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 3875 GAGAAGTCCATATCCATCGAAACTCTATTAACAAAAACTGCAAAGCGTTTCAATACCCTT 3934
Query 3938 TCATTGTGTTCCTCGAGAAGGTCCaaaaaaaCAAATTGGTATATCTTCAAGATACAACAG 3997
||||||||||||| || ||| || ||| ||| ||| |||||||||| ||||||||||| |
Sbjct 3935 TCATTGTGTTCCTTGAAAAGCTCGAAACAAAGAAAGTGGTATATCTGCAAGATACAACTG 3994
Query 3998 TTGTTTCTCCATTTTCCATTCTACTTTTTGGCGGCTCAGTCAATGTTCATCATCAGAGTG 4057
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3995 TTGTTTCTCCGTTCTCCATTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAGAGTG 4054
Query 4058 GATCAGTAACCATTGATGGGTGGTTAAAGCTAACAGCACCAGCTCAAACCGCGGTTTTGT 4117
||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 4055 GATCAGTTACCATTGATGGGTGGTTAAAGCTAACAGCACCAGCACAAACTGCCGTTTTGT 4114
Query 4118 TCAAAGAGCTACGACTAACCCTCCATTCCATTCTCAAAGATCTTATCCGAAAACCTGAGA 4177
|||||||||| || ||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 4115 TCAAAGAGCTCCGGTTAACCCTTCATTCCATTCTCAAAGATCTCATCCGAAAACCCGAGA 4174
Query 4178 AATCAGGTATTGTCCATAACGAAGTCGTCAAATCTATGGTCCATCTTCTTATAGAAGAAG 4237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4175 AATCAGGTATTGTCCACAACGAAGTCGTCAAATCTATGGTCCATCTTCTTATAGAAGAAG 4234
Query 4238 GCAGACCGCAACACTCATGA 4257
||| |||||||||| |||||
Sbjct 4235 GCAAACCGCAACACACATGA 4254
Score = 1347 bits (729), Expect = 0.0
Identities = 913/1000 (91%), Gaps = 20/1000 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCCGAAGAAAAAACCTCAGACGAAGAAACAAAGCAACAATGAAGTTATC-TCTTC 59
|||||||||| ||| |||||||||| ||| ||||||||||| || ||| || | |||||
Sbjct 1 ATGGCTCCGACGAAGAAACCTCAGAAGAACAAACAAAGCAAAAACGAA-ATAGCTTCTTC 59
Query 60 TTCAATACCAAATTCAGGCCACAAGAAACCATCTAAATCCCCAAAGCTTTTGATTTCGCC 119
|| |||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 60 TTTAATACCTAATTCAGGCCATAAGAAACCATCTAAAGCCCCAAAGCTTTTAATTTCGCC 119
Query 120 GGAAAATGAAGACCGTTTGCGACGGCTCTTACTCAACTTTCGCCGGACTCCTTCTCCGGT 179
|||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 120 GGAAAACGAAGACCGTTTACGACGGCTCTTGCTCAACTTTCGCCGGACGCCTTCTCCGGT 179
Query 180 CATGGCGTCGCTATCTGTGACTCAGAAGAGAAAGAAACTCAATAGTCTCTACGAGAATCT 239
|| |||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 CACGGCGACGCTATCTGTTACTCAGAAGAGAAAGAAACTCAATAATCTCTACGAGAATCT 239
Query 240 CTCTTGCGAAGGGTTTTTAGATGATCAGATTGAACTCGCTCTGTCCTCTCTTAGGAATGG 299
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||
Sbjct 240 CTCTTGCGAAGGGTTTTTAGATAATCAGATTGAACTCGTTCTCTCCTCTCTTAGGGATGG 299
Query 300 AGCAACGCTTGAGACTTCACTTGATTGGCTCTGTTTGAACTTGCCGAGTCATGAATTGCC 359
|||||||||||||||| | ||||||||||| || |||||||||||||| |||||||||||
Sbjct 300 AGCAACGCTTGAGACTGCTCTTGATTGGCTTTGCTTGAACTTGCCGAGCCATGAATTGCC 359
Query 360 AGTGAACTTTTCTAACGGAGCTTCTCGCGTTCCTACCACAGGACGCTCTGTGGCGGTGAT 419
|||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct 360 AGTGAACTTTTCTAACGGGGCTTCTCGTTTTCCTTCCACAGGACGTTCTGTGGCGGTGAT 419
Query 420 ATCGACCTCAAGGAAAGATTGGAATGTGTCTGCTGAATCTGCTGAAT-CATCAGTCCAGG 478
||||| |||| ||||||||||||||||||||||||||| | | | || || |||
Sbjct 420 ATCGAAATCAAAGAAAGATTGGAATGTGTCTGCTGAATC--ATCAGTCCA--AG---AGG 472
Query 479 TTAAGGAGGAGGATCCTGAGCCTGAAGTTTTAGTTAGAGTGAAGAGCAAGCGAGAT---G 535
||||||||| | ||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 473 TTAAGGAGG-TG--CCTGAATCTGAAGTTTTAGTTCGAGTGAAGAGCAAGCGAGATGAAG 529
Query 536 AAGAAGAAGATAGTCTTAGTTCTTGTCGATCATCTCAAGCTGATTGGATCCGTCAGTATA 595
||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||
Sbjct 530 AAGAAGAAGATAGTCTTAGTTCTTGCCAACCATCTCAAGCTGATTGGATCCATCAGTATA 589
Query 596 TGAAAAGACTGGAAGAGGAAGAATTGGAATCTTCGGACGATGAAG-GAGATAAGGTATCT 654
||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||
Sbjct 590 TGAAAAGACTGGAAGAGGAGGAATTGGAATCTTCCGACGATG-AGAGAGATAAGGTATCT 648
Query 655 GGTCCAAGGCCTTTCGAAGTGATTGCCAAAGACTATTGTTTAGAAAGATCTAATGCTATA 714
||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||
Sbjct 649 GGTCCAAGGTCTTTCGAAGTGATTGCCAAAGAATATTGTGTAGAAAGATATAATGCTATA 708
Query 715 AAAGCAAAGAGAAAGGGTGATAAAAGTGGACAGAGGCAAGCAGGCCTAGCCATTTGCAAG 774
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 709 AAAGCAAAGAGGAAGGGTGATAAAAGTGGACAGAGCCAAGCAGGCCTAGCCATTTGCAAG 768
Query 775 CTCAAGCAAGAGATGAATGCTCTTGGGCCATCAGAAGCAATATTGGAATCTGAGTTTCAG 834
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 769 CTCAAGGAAGAGATGAATGCTCTTGGGCCGTCAGAAGCAATATTGGAATCTGAGTTTCAG 828
Query 835 CGTGATCGTCAAGATTGTGAAGGCGCTAAAGAAAAAGAAGTAACCTTCCCCA-TGCCTGA 893
|||||||||||||||||||||||||||| ||||||||||||| ||| || | ||| |||
Sbjct 829 CGTGATCGTCAAGATTGTGAAGGCGCTAGAGAAAAAGAAGTAGCCT-CCTCTGTGCTTGA 887
Query 894 TGACGTTCATGAGTCAGTAAATGCTGATGCTTTCTTTTTTCAGCTGTTTGATGACTTGAC 953
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 888 TGACGTTCATGAGTCAGTAAATGCTGATGCTTTCTTTTTTCAGCTTTTTGATGACTTGAC 947
Query 954 CTTGGATCCAAATACTGTTGGGAGCTGTAAATCTGAGGAA 993
||||||| ||||| ||||||||||||||||||||||||||
Sbjct 948 CTTGGATACAAATCCTGTTGGGAGCTGTAAATCTGAGGAA 987
> AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:21489285-21501811
REVERSE LENGTH=4611
Length=4611
Score = 2134 bits (1155), Expect = 0.0
Identities = 2042/2455 (83%), Gaps = 121/2455 (5%)
Strand=Plus/Plus
Query 200 CTCAGAAGAGAAAGAAACTCAATAGTCTCTACGAGAATCTCTCTTGCGAAGGGTTT--TT 257
|||| |||| |||||||||||||| | |||| ||||| |||||||||||| ||||| ||
Sbjct 242 CTCAAAAGACAAAGAAACTCAATAATGTCTATGAGAAGCTCTCTTGCGAA-GGTTTCGTT 300
Query 258 AGATGATCAGATTGAACTCGCTCTGTCCTCTCTTAGGA-ATGGAGCAACGCTTGAGACTT 316
||||||||||||||||||||||| |||||||||| || ||||||| ||| ||||| ||
Sbjct 301 -GATGATCAGATTGAACTCGCTCTCTCCTCTCTTA-GAGATGGAGCTACGTTTGAGGCTG 358
Query 317 CACTTGATTGGCTCTGTTTGAACTTGCCGAGTCATGAATTGCCAGTGAACTTTTCTAAC- 375
||||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||| ||
Sbjct 359 CACTTGATTGGCTTTGTTTGAATTTGCCGAGTCATGAGTTGCCTGTGAAGTTTTCT-ACT 417
Query 376 GGAGCTTCTCGCGTTCCTACCACAGGACGCTCTGTGGCG-GTGATATCGACCTCAAGGAA 434
||||||||||| ||||| |||||||| | ||||||| | ||||||||||||||| || |
Sbjct 418 GGAGCTTCTCGTTTTCCTTCCACAGGAGGTTCTGTGG-GTGTGATATCGACCTCACGGGA 476
Query 435 AGATTGGAATGTGTCTGCTGAATCTGCTGAATCATCAGTCCAGGTTAAGGAGGAGGATCC 494
|||||||||| | | || | |||| || ||||| |||| | | ||||| ||
Sbjct 477 CGATTGGAATG-AT-T-CT--A----CTGACTCTTCAGT-CAGGGT-A-GAGGAAGA--- 521
Query 495 TGAGCCTGAAGTTTTAGTTAGAGTGAAGAGCAAGCGAGATGAAGAAGAAGATAGTCTTAG 554
|| |||| |||||| ||| | |||||| | |||| | | || |||||||||| ||||||
Sbjct 522 GGAACCTGCAGTTTTTGTTCGTGTGAAGGGAAAGC-A-A-GATGAAGAAGATACTCTTAG 578
Query 555 TTCTTGTCGA-TCATCTCAAGCTGATTGGATCCGTCAGTATATGAAAAGACTGGAAGAGG 613
||| || | | |||||||||||||||||||| || |||||||||| |||| ||||||||
Sbjct 579 TTC-TGACAAGTCATCTCAAGCTGATTGGATTCGGCAGTATATGATGAGACAGGAAGAGG 637
Query 614 AAGAATTGGAATCTTCGGACGAT---G-A-A--G----G-----AG--ATAAGGTATCTG 655
|||||||||||| || ||| ||| | | | | | || ||||||| ||||
Sbjct 638 AAGAATTGGAATGTTGGGAAGATGAAGTAGATGGTATTGACCCCAGAAATAAGGTCTCTG 697
Query 656 GTCCAAGGCCTTTCGAAGTGATTGCCAAAGACTATTGTTTAGAAAGATCTA-ATGCTATA 714
|||||||||| ||||| |||||||||||||| || | || | |||||| | ||||||||
Sbjct 698 GTCCAAGGCCATTCGATGTGATTGCCAAAGAATACTATTCGGCAAGATC-AGATGCTATA 756
Query 715 AAAGCAAA-GAGAAAGGGTGATAAAAGTGGACA-GAGGCAAGCAGGCCTAGCCATTTGCA 772
|||||||| ||| ||| |||||||||| ||||| || ||||||||||||||||||| |||
Sbjct 757 AAAGCAAAGGAG-AAGCGTGATAAAAGAGGACAGGA-GCAAGCAGGCCTAGCCATTCGCA 814
Query 773 AGCTCAAGCAAGAGATGA-ATGCTCTTGGGCCATCAGAAGCAATATTGGAATCTGAGTTT 831
|||||||||||||||| | || ||||||| |||||||||||| ||||||||||| |||
Sbjct 815 AGCTCAAGCAAGAGAT-ATCTGATCTTGGGTTATCAGAAGCAATGTTGGAATCTGAATTT 873
Query 832 CAGCGTGATCGTCAAGATTGTGAAGGCGCTAAAGAAAAAGAAGT-AACCT-TCCCCA-TG 888
|||||||| || | || |||| | |||| |||| ||||| | ||||| | |||| |
Sbjct 874 CAGCGTGA---ACATGCTTTTGAAAGTGCTACAGAACAAGAA-TCAACCTGT-CCCATTT 928
Query 889 CCTGATGACGTTCATGAGTCAGTAAATGCTGATGCTTTCTTTTTTCAGCTGTTTGATGAC 948
|| ||| || ||||||||||||| ||||||| | | ||| | ||||| |||| ||| |
Sbjct 929 CC-GATAACCTTCATGAGTCAGTTGATGCTGACGATGTCTCTGTTCAGATGTTAGATAAT 987
Query 949 TTGACCTTGGAT-CCAAATACTGTTGGGAGCTGTAAATCTGAGGAAACTCAACCTAAAGC 1007
||||||||| || || ||| ||| || ||||| | | |||||||||| |||| |||||||
Sbjct 988 TTGACCTTGAATACC-AATCCTGCTGAGAGCTATGAGTCTGAGGAAATTCAAACTAAAGC 1046
Query 1008 TCTTTCCTTAAGTTCTTCGGGGCAAGAATCAGTTGTC-TCGA-ATGATAG-TTTAGATGG 1064
|||| ||| |||||| ||||| ||||| | |||| | || | |||| || || ||| ||
Sbjct 1047 TCTTCCCTCAAGTTCCTCGGGACAAGATTTTGTTG-CATC-AGATGA-AGATTCAGA-GG 1102
Query 1065 -CTTGGACCTTGGTGATTTGTTCGTAGAAGATGTTCCGCCTTATGTACCTTCTTCCCATG 1123
| |||| ||||| ||| ||| | ||||| ||||||||| || | ||| ||||||
Sbjct 1103 ACGTGGAACTTGGCGATACATTCTTTGAAGAAATTCCGCCTTCTGAAATTTCACCCCATG 1162
Query 1124 AAATCCTGGAATTACAGAAGAAGGAAATTATGAGAGAACTATGCAATGAGAAAAATCTTA 1183
|| |||||||||| |||||| |||||| |||||||||||| | | ||||||||||||
Sbjct 1163 AACTCCTGGAATTGCAGAAGGAGGAAAAGATGAGAGAACTACGTAGTGAGAAAAATCTGG 1222
Query 1184 CGAAACTA-AAGGT-T-T--TA-CAGGGTGAAGCGCAAAAGATCCCAAAGGCATTGCTCC 1237
||||||| | ||| | | | ||||||| ||||||||||||||||| ||||| ||||
Sbjct 1223 GGAAACTAGATGGTATCTGGAAGAAGGGTGAGGCGCAAAAGATCCCAAAAGCATTTCTCC 1282
Query 1238 ATCAGCTGTGTCAAAGGTCAGGGTGGGTAGCACCAAAGTTCAATAAAGTAACTGGGGAAG 1297
|||| |||||||||| |||||||||| |||||||||||||||||||| ||| || ||||
Sbjct 1283 ATCAATTGTGTCAAAGATCAGGGTGGGAAGCACCAAAGTTCAATAAAGAAACCGGTGAAG 1342
Query 1298 GAAGCAACTTCTCATATACCATAAGTGTTATGCGTAAATCTAGT-GGATTTGGTAAAAGC 1356
|||| || ||||||||||| ||||| || |||| ||| | ||| ||| ||||||| |
Sbjct 1343 GAAGAAATTTCTCATATACTGTAAGTATTCTGCGCAAAGCCAGTGGGA-GGGGTAAAAAC 1401
Query 1357 AGACAAGCTGGGGGTCTGGTAACTATTCAACTTCCTCATCAAGTTGAGGATTTTGAATCC 1416
|||||||| || |||||||||||| | |||||||||| | ||| |||| |||||||||||
Sbjct 1402 AGACAAGCCGGTGGTCTGGTAACTCTCCAACTTCCTCCTAAAGATGAGAATTTTGAATCC 1461
Query 1417 ATCCAGGATGCACAAAACAGAGTTGCGGCATTTGCTCTCCATAAGCTATTTTCTGATTTG 1476
||| ||||||||||||||| |||||| ||||||||||| ||||| || |||||||||||
Sbjct 1462 ATCGAGGATGCACAAAACAAAGTTGCAGCATTTGCTCTTCATAAACTTTTTTCTGATTTA 1521
Query 1477 CCTGTTCACTTTGCAATTACTGAACCTTATGCCTCTCTAGTTTTGATCTGGAAACAAGAG 1536
||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1522 CCTGTCCACTTTGCAATTACGGAGCCTTATGCTTCTCTAGTTTTGATCTGGAAACAAGAG 1581
Query 1537 GAATCGTTAG-GTA-TACCA-AC----CAGAGAAGAAGAACGAAGAGCAAAATTTGTTGA 1589
|||| ||| | ||| ||||| || || ||||||||| |||||||| || ||||||||
Sbjct 1582 GAATTGTT-GTGTACTACCATACAAAGCACAGAAGAAGACCGAAGAGCTAATTTTGTTGA 1640
Query 1590 -AAGCTTGCTTGAGGCA-GACAATTTCAGCTTGACCACTTCTTCGTGTGGCATACAAAAT 1647
||| |||||||||| | |||| ||| || ||||||||||| ||| || || | | |||
Sbjct 1641 TAAG-TTGCTTGAGG-AGGACAGTTTTAGTTTGACCACTTCGTCGAGTAGCTTTGAGAAT 1698
Query 1648 GCACTTCCAATGGTAGACTCCTGTGTCAAAGAGAACGATGACTTGGATGTTGTCAAATCT 1707
| ||||| |||||||||||| ||||||||| || |||||||||| |||||||||||||
Sbjct 1699 TCGCTTCCGTTGGTAGACTCCTATGTCAAAGACAAAGATGACTTGGGTGTTGTCAAATCT 1758
Query 1708 AACCATAGAGCTAAAAGAAACTTTTCCATGGAAACTGAATGTTCT-TCTCTCAAACAAAA 1766
||| | |||||||||||| ||| || || || |||| |||| | |||||| ||| |||
Sbjct 1759 AACAACAGAGCTAAAAGAGACTCTTATATAGAGGCTGAGTGTT-TATCTCTCCAACGAAA 1817
Query 1767 ACAAGAAAACAAGAAGAAG-ATGCCGAAGTACAAGGAAATGTTAAAAACTAGAGCTGCTC 1825
|||||||||||| ||| || | || ||||||||||| ||||| ||||||||| ||||||
Sbjct 1818 ACAAGAAAACAAAAAG-AGAACGCAAAAGTACAAGGACATGTTGAAAACTAGAACTGCTC 1876
Query 1826 TTCCTATATCAGAAGTGAAGAA-GGATATACTGCAGAAGCTTAAAGAAAAAGATGTCTTG 1884
|||||||||| ||||| ||||| || ||||| ||| | || ||||||||||||||||||
Sbjct 1877 TTCCTATATCTGAAGTTAAGAATGG-CATACTCCAGCATCTGAAAGAAAAAGATGTCTTG 1935
Query 1885 GTGGTATGCGGAGAAACAGGCTCCGGAAAGACTACACAGGTTCCTCAATTTATACTGGAT 1944
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1936 GTGGTATGCGGAGAAACAGGCTCTGGAAAGACTACACAGGTTCCTCAATTTATATTGGAT 1995
Query 1945 GATATGATCGACTCGGGGCATGGTGGATACTGTAATATTATATGCACACAACCTCG--GG 2002
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1996 GATATGATTGATTCGGGGCATGGTGGATACTGTAATATCATATGCACACAACCTCGTCGG 2055
Query 2003 ----C---TATCTCTGTTGCTCAAAGAGTTGCTGATGAGCGCTGTGAA-CCTCCTCCAGG 2054
| ||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 2056 ATAGCGGCTATCTCTGTTGCTCAAAGAGTTGCTGATGAGCGTTGTGAATCCTC-TCCAGG 2114
Query 2055 CTTTGATGATTCTTTGGTTGCTTATCAAGTTCGTCATCAAAATGCAAGGAGTGACAAGAC 2114
||| ||||| || ||||||| ||||||||||||| | ||| ||||||||||||||||||
Sbjct 2115 CTTAGATGACTCATTGGTTGGGTATCAAGTTCGTCTTGAAAGTGCAAGGAGTGACAAGAC 2174
Query 2115 AAGGCTGCTGTTTTGTACTACAGGAATTCTCCTGAGAAAACTTG-TGGGGGATAAGA-CC 2172
|||||||||||||||||||| || ||||| ||||| ||||| | ||||| ||| || ||
Sbjct 2175 TAGGCTGCTGTTTTGTACTACTGGCATTCTACTGAGGAAACTCGCTGGGG-ATA-GAACC 2232
Query 2173 TTGAAAGATGTTACACATATTATAGTCGATGAAGTGCATGAGCGGTCTCTTATGGGTGAT 2232
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 2233 TTGAACGATGTTACACATATTATAGTTGATGAAGTGCATGAGCGGTCTCTTTTGGGTGAT 2292
Query 2233 TTTCTTCTCATTATTTTGAAGATCTTGATTGAGAAGCAATCCTGGGATAATGCATTACCT 2292
|||||||| ||||||||||||| | |||||||||||||||| || |||||| ||| || |
Sbjct 2293 TTTCTTCTAATTATTTTGAAGAGCCTGATTGAGAAGCAATCATGCGATAATACATCACGT 2352
Query 2293 AAACTGAAAGTTATCCTTATGTCCGCTACTGTTGATGCACATC-AGTTCTCAAGATATTT 2351
||||||||||||||||||||||| ||||||||||| || ||| | ||||||||||||||
Sbjct 2353 AAACTGAAAGTTATCCTTATGTCTGCTACTGTTGACGCTGATCTA-TTCTCAAGATATTT 2411
Query 2352 TGGTCAATGTCCTATAATTACTGCTCAAGGACGAACTCACCCGGTTACTACTTACTTTCT 2411
|||||| |||||| | || ||||||||||||||||| || || || ||||| |||| ||
Sbjct 2412 TGGTCATTGTCCTGTGATCACTGCTCAAGGACGAACACATCCAGTCACTACCCACTTCCT 2471
Query 2412 GGAGGACATTTATGAGAGGACTAAGTACCTTCTGGCTTCAGATTCACCTGCTGCTCTAAG 2471
|||||| ||||||||||| | ||| |||||||| ||| ||||||| |||||||| |||||
Sbjct 2472 GGAGGAGATTTATGAGAGTATTAACTACCTTCTTGCTCCAGATTCTCCTGCTGCGCTAAG 2531
Query 2472 TTCTGATGCATCCATTACAGACGAGCTTGGTTCTGTAAACGTCCGTAGGGGGAAAA-GAA 2530
|||||| |||| |||| |||| |||||||||||||||| | |||||||||||||| |||
Sbjct 2532 ATCTGATACATCTATTAAAGACAAGCTTGGTTCTGTAAATGACCGTAGGGGGAAAAAGAA 2591
Query 2531 TCTTATGTTGGCTGGCTGGGGAGAC-AGTTATTTGGTTTCAGAGGACGGTCTTAA 2584
|||| | |||||||||||||| ||| | ||||||| ||||||||||| |||||||
Sbjct 2592 TCTTGTATTGGCTGGCTGGGGCGACGA-TTATTTGCTTTCAGAGGACTGTCTTAA 2645
Score = 1142 bits (618), Expect = 0.0
Identities = 1009/1191 (85%), Gaps = 54/1191 (5%)
Strand=Plus/Plus
Query 3101 AGAGTTGTGTTTACATATCAAATTACTTGGCTTGGGTCACATTAAGCCGTTTCTGTCCAA 3160
|||||| ||| |||| |||||||| |||||||||||||||||||| || ||||||||| |
Sbjct 3234 AGAGTTATGTCTACAAATCAAATTGCTTGGCTTGGGTCACATTAAACCTTTTCTGTCC-A 3292
Query 3161 GGCAAGCTCTGGAACCTCCAAGTGAAAGTGCTATAAACTCTGCAATTTTATTGTTGCAAA 3220
|| ||| |||||||||| |||||| ||||||| | |||||| |||| |||||| ||
Sbjct 3293 GG---GCTTTGGAACCTCCGAGTGAAGGTGCTATGACCTCTGCGATTTCATTGTTACATG 3349
Query 3221 AGGTCGGTGCTCTTGAAGGGGACGAAGAGTTGACACCACTAGGACATCATTTAGCAAAAC 3280
|||| |||||| |||||||||| ||||||||||||||||| || ||||||||||| ||||
Sbjct 3350 AGGTTGGTGCTGTTGAAGGGGATGAAGAGTTGACACCACTTGGGCATCATTTAGCCAAAC 3409
Query 3281 TTCCTGTTGATTTGTTGATTGGAAAGATGCTGTTATATGGTGGCATTTTTGGTTCCTTAT 3340
||||||||||| |||| |||||||||||||||||||| ||||| || ||||||| |||||
Sbjct 3410 TTCCTGTTGATGTGTTAATTGGAAAGATGCTGTTATACGGTGGAATATTTGGTTGCTTAT 3469
Query 3341 CACCTATTCTCTCGATTGCTGCTTTCTTGAGCTGCAAATCGCCATTTGTATATTCCAAAG 3400
|||||||||||||||| || ||||||||||||| ||||||||| ||| ||||| ||||||
Sbjct 3470 CACCTATTCTCTCGATCGCAGCTTTCTTGAGCTACAAATCGCCGTTTATATATCCCAAAG 3529
Query 3401 AT--G-AGCAAAATGTCGATCGCGTGAAACTTGCTCTTTTGTCTGATAA-GCTGGAGAGT 3456
|| | ||||||||||||| || ||||||||||||||||||||||| || | || |||
Sbjct 3530 ATGAGAAGCAAAATGTCGACCGGGTGAAACTTGCTCTTTTGTCTGACAATG-GGGTGAGC 3588
Query 3457 TCGAGTAATTTAAACAACAATGACAGACAATCTGATCACCTCCTTGTGGTGGTTGCATAT 3516
|| ||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 3589 TCAAGTGATTTAAACAACAATGACAGACAATCTGATCACCTCCTTATGATGGTTGCATAC 3648
Query 3517 GAGAAATGGGTGAAGATACTGCATGAGCAAGGATTTAAAGCTGCAGAGAGGTTCTGTGAA 3576
|| |||||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||
Sbjct 3649 GATAAATGGGTGAAGATACTGCAAGAGCGAGGAATGAAAGCTGCACAGAGGTTCTGTGAA 3708
Query 3577 TCAAAGTTTTTGAACAGCTCAATGATGCAGACGATAAGAGACAGGAGAGTAGAGTTTGGC 3636
|||||||| |||| ||||||| |||||| || ||| ||||||| ||||||| | ||||||
Sbjct 3709 TCAAAGTTCTTGAGCAGCTCAGTGATGCGGATGATCAGAGACATGAGAGTACAATTTGGC 3768
Query 3637 TTTTTGCTTGCCGACATCGGGCTCATCAATCTTCCTAAA---GGCGAGGGG--AG-AAGG 3690
|| ||||||||||||||||||||||||||||||||| || ||| || ||||
Sbjct 3769 ACATTACTTGCCGACATCGGGCTCATCAATCTTCCTAAAACAGGAGAGTTTTCAGGAAGG 3828
Query 3691 AA---GGAGAATCTTGATGTTTGGTTTTCTGACAAAACTCAACCTTTCAATATGTATTCA 3747
|| ||| ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 3829 AAAAAGGAAAATCTTGATGTCTGGTTTTCTGACCCAACTCAACCTTTCAATATGTATTCA 3888
Query 3748 CAAG-AACCTGAAGTTGTTAAGGCTATTTTATGCGCGGGACTATGTCCTAATATTGCAG- 3805
|| | |||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||
Sbjct 3889 CA-GCAACCTGAAGTTGTTAAGGCTATACTATGCGCAGGACTATATCCTAATATAGCAGC 3947
Query 3806 -A--G-----GGA-TTA--G--------TT-AACCGTTTAACAAAGCCAGCAAAAGAAAC 3845
| | ||| ||| | || ||| |||| ||||||| || ||| ||||
Sbjct 3948 CAATGATAAAGGAATTACAGAGACAACGTTTAACAGTTTGACAAAGCAAGGAAACCAAAC 4007
Query 3846 AGA-ACGTTATGTAGT-ATGGCATGATGGCAAAAGAGAAGTCCATATCGATCGAACCTCT 3903
| | | | || | | |||| | ||||||| ||| ||||| |||||| ||| | | ||
Sbjct 4008 AAAGA-GCTAC-TCGGCATGGTACGATGGCAGAAGGGAAGTTCATATCCATCCATCTTCC 4065
Query 3904 ATAAACAAAAACTGCAAAGCGTTTCAATATCCTCTCATTGTGTTCCTCGAGAAGGTCCaa 3963
||||||| |||| |||||| |||||| | ||| || |||| ||||| |||||||| ||
Sbjct 4066 ATAAACAGCAACTTCAAAGCATTTCAAAACCCTTTCCTTGTATTCCTTGAGAAGGTGGAA 4125
Query 3964 aaaaaCAAATTGGTATATCTT-CAAGATACAAC-AGTTGTTTCTCCATTT-TCCATTCTA 4020
| |||||| | ||||| || | ||||||||| | |||||||||| ||| || ||||||
Sbjct 4126 ACGAACAAA--G-TATAT-TTGCGAGATACAACCA-TTGTTTCTCC-TTTCTCTATTCTA 4179
Query 4021 CTTTTTGGCGGCTCAGTCAATGTTCATCATCAGAGTGGATCAGTAACCATTGATGGGTGG 4080
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 4180 CTTTTTGGCGGCTCAATCAATGTTCATCATCAGAGTGGATCAGTCACTATTGATGGGTGG 4239
Query 4081 TTAAAGCTAACAGCACCAGCTCAAACCGCGGTTTTGTTCAAAGAGCTACGACTAACCCTC 4140
|||||| || |||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 4240 TTAAAGGTAGCAGCACCAGCTCAAACCGCGGTTTTGTTCAAAGAACTCCGGTTAACCCTC 4299
Query 4141 CATTCCATTCTCAAAGATCTTATCCGAAAACCTGAGAAATCAGGTATTGTCCATAACGAA 4200
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 4300 CATTCCATTCTCAAAGATCTTATCCGAAAACCTGAGAAATCAGGTATTGTCCACAACGAA 4359
Query 4201 GTCGTCAAATCTATGGTCCATCTTCTTATAGAAGAAGGCAGACCGCAACAC 4251
||||||||||| ||||| |||||||||||||||||||| | ||||||||||
Sbjct 4360 GTCGTCAAATCGATGGTTCATCTTCTTATAGAAGAAGGAAAACCGCAACAC 4410
Score = 688 bits (372), Expect = 0.0
Identities = 464/508 (91%), Gaps = 7/508 (1%)
Strand=Plus/Plus
Query 2602 AAAAGGTTAAATGAGGATATTATTGACTATGAGCTTCTTGAAGAGTTGATATGCCACATT 2661
||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2704 AAAAGGTTAAACGAGGATAGAATTGACTACGAGCTTCTTGAAGAGTTGATATGCCACATT 2763
Query 2662 GATGACACTTGTGAGGAAGGAGCCATTCTTGTGTTTTTGCCTGGAATGGCAGAAATCAAC 2721
|||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||
Sbjct 2764 GATGACACTTGTGAGGAAGGAGCCATTCTTATATTTTTGCCTGGAGTGGCAGAAATTTAC 2823
Query 2722 ATGCTACTCAATAGGTTATCTGCTTCCTATCATTTTCGTGGACCTTG-TGGAGATTGGCT 2780
||| ||||| ||| |||| |||||||||||| ||||||||||||| | || |||||||||
Sbjct 2824 ATGTTACTCGATATGTTAGCTGCTTCCTATCGTTTTCGTGGACCT-GCTGCAGATTGGCT 2882
Query 2781 TCTTCCTCTACATTCTTCTATTGCATCTACAGAACAGAGAAAAGTGTTTCTGCGCCCCCC 2840
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 2883 TCTTCCTCTACATTCTTCTATTGCATCTTCAGAACAGAGAAAGGTGTTTCTGCGTCCCCC 2942
Query 2841 TAAAGGCATAAGGAAGGTTGTCATAGCTACAAATATTGCCGAGACCAGTATAACAATTGA 2900
||||||| || |||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 2943 TAAAGGCTTACGGAAGGTTATCGCAGCTACAAATATTGCAGAGACCAGTATAACAATTGA 3002
Query 2901 GGATGTGGTTTATGTGATTGACAGTGGAAAACACAAGGAAAATCGCTATAATCCACAGAA 2960
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 3003 TGATGTGGTGTATGTGATTGACAGTGGCAAACACAAGGAAAATCGCTACAATCCACAGAA 3062
Query 2961 GAAATTGTCAAGCATGGTGGAAGATTGGGTATCTAAAGCAAATGCAAGACAAAGAATGGG 3020
|||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 3063 GAAACTGTCGAGCATGGTGGAAGATTGGATATCTCAAGCAAATGCAAGACAAAGAACAGG 3122
Query 3021 AAGAGCTGGACGTGTCAAACCTGGACATT-GCTTTTCATTGTACACACG-TCATAGGTTC 3078
|||||||||||| ||||||||||| ||| ||||||||||||||||||| | ||||||||
Sbjct 3123 AAGAGCTGGACGCGTCAAACCTGGG-ATTTGCTTTTCATTGTACACACGCT-ATAGGTTC 3180
Query 3079 GAGAAGCTCATGCGTCCCTATCAGAGTT 3106
|||||||| ||||||||||||||| |||
Sbjct 3181 GAGAAGCTAATGCGTCCCTATCAG-GTT 3207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 212206168890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5