BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315394
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13780.1 | Symbols: | methionine--tRNA ligase, putative / m... 632 4e-180
AT5G02690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 122 1e-26
> AT4G13780.1 | Symbols: | methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993155-7998515
REVERSE LENGTH=2687
Length=2687
Score = 632 bits (342), Expect = 4e-180
Identities = 452/506 (89%), Gaps = 4/506 (1%)
Strand=Plus/Plus
Query 1639 GATCGCGAAATTACCATGGCAAGACTTGATATTCGAGTAGGTAAAATTGTGAAGGCTGAG 1698
||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1973 GATCGTGAAATAACTATGGCAAGACTTGATATCCGAGTTGGTAAAATTGTGAAGGCTGAG 2032
Query 1699 AAACATCCTAAGGCAGATTCATTGTATGTAGAAGAAATTGATGTTGGAGAAGATCAACTT 1758
|||||||| ||||||||| |||||||||||||||||||||||||||| | | | || ||
Sbjct 2033 AAACATCCCAAGGCAGATGCATTGTATGTAGAAGAAATTGATGTTGGGGGTGGTGAAATT 2092
Query 1759 TACACTGTTGTTAGTGGACTAGTTAAGTATATACCTCTTGAGGAGATGCAGAACCGTTTG 1818
||||||||| |||||||| || || ||||||||||||||||| |||||||| ||| ||
Sbjct 2093 CGCACTGTTGTCAGTGGACTGGTCAAATATATACCTCTTGAGGAAATGCAGAATCGTATG 2152
Query 1819 GTTTGTGTTCTTTGCAACTTGAAGCCGGCGAAAATGAGGGAGATTGTGTCACAAGGAATG 1878
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 2153 GTTTGTGTTCTTTGCAACTTGAAACCGGCGAAAATGAGGGATATTGTGTCACAAGCAATG 2212
Query 1879 GTTCTTGCCA-CTTCTAGTAGTGATGGTAGCAAGGTGGAGTTAGTTGAGCCCCCTGAATC 1937
|||||||| | |||| ||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 2213 GTTCTTGC-AGCTTCCAGTAGTGATGGAAGCAAGGTGGAGTTAGTTGAGCCCCCTAAAAC 2271
Query 1938 TTCTAAGATTGGAGAGCGAGTTAAGATT-CCCGGGTTTGAAGGCGAGCCAGACAATGTCT 1996
| |||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 2272 TGCTAATATTGGAGAGCGAGTTAC-ATTTCCCGGGTTTGAAGGCGAGCCAGACGATGTCT 2330
Query 1997 TAAACCCGAAGACGAAAATATGGGAGAAACTTGTAGTGGATCTAAACACAAATGAGAATT 2056
||||||| |||| |||| ||||||||| ||| | || |||||||||||||| ||||||
Sbjct 2331 TAAACCCAAAGAAGAAAGTATGGGAGACGCTTTTGGTTGATCTAAACACAAAAGAGAATC 2390
Query 2057 TAGTTGCTTGCTACAAAAATTTACCCTTCACTACATCTGCAGGTGAATGCAAAGTTTCAT 2116
||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||
Sbjct 2391 TAGTTGCTTGCTACAAAGATGTGCCCTTCACTACATCTGCAGGTGTATGCAAAGTTTCAT 2450
Query 2117 CCATTAGCAATGGCACAATCCGATAA 2142
|||| ||||||||||| ||||| |||
Sbjct 2451 CCATCAGCAATGGCACGATCCGGTAA 2476
Score = 599 bits (324), Expect = 4e-170
Identities = 591/714 (83%), Gaps = 42/714 (6%)
Strand=Plus/Plus
Query 457 TGT-AAAACCACACCCGGGTTTCGCGACACGGACCATTTGTTTCTTGAGCTTCCCTTGCT 515
||| |||| ||||||| | |||||||||| ||||| ||||| |||||||||| || ||
Sbjct 659 TGTCAAAA-CACACCCCGAATTCGCGACACAGACCACCTGTTTATTGAGCTTCCGTTACT 717
Query 516 GAAATATAAGTTGAAAAAGTATATTAAAGAGACATCTAG-TAGTGGATCTTGGAGTCGGA 574
|||| ||| |||| || |||||||||| |||| ||| | || |||||||||||||| |
Sbjct 718 GAAAGATAGGTTGGAAGCGTATATTAAAAAGACCTCT-GTTACTGGATCTTGGAGTCAAA 776
Query 575 ATGCTATTCAAACGACGGATGCATCGCTTAAGGAAGTGCCTAACGATAGCGAAAAGGACG 634
|||||||||||||||| | || || | || || || | ||| |
Sbjct 777 ATGCTATTCAAACGAC--A--AAT-GC-------A-TGGCT-----TA--G----GGATG 812
Query 635 GGCTTAAGA-AGAGATGCATCACAAGGGAT-TTAAAGTGGGGAGTTCCAGTTCCACATGA 692
||||| ||| |||||||||| || |||||| || ||||||||||| || || ||||||||
Sbjct 813 GGCTT-AGACAGAGATGCATTACGAGGGATCTT-AAGTGGGGAGTGCCTGTCCCACATGA 870
Query 693 GAAATATAAGGAAAAAGTCTTCTACGTTTGGTTTGATGCTCCTATTGGTTATGTTTCGAT 752
|||||| ||||| ||||||||||| ||||||||||||||||||||||| || || || ||
Sbjct 871 GAAATACAAGGACAAAGTCTTCTATGTTTGGTTTGATGCTCCTATTGGATACGTCTCAAT 930
Query 753 AACTTCATGTTACACATCGGAATGGGAGAAGTGGTGGAAGAATCCTGAGAATGTTGAGCT 812
||| || || |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 931 AACGTCTTGCTACACATCTGAATGGGAGAAGTGGTGGAAGAATCCTGAGAATGTGGAGCT 990
Query 813 TTATCAGTTTATGGGGAAAGATAATGTGTTTTTTCACACTGTCTTGTTTCCTTGTACGCA 872
||||||||||||||||||||| |||||| ||||||||||| ||||||| | ||| ||
Sbjct 991 TTATCAGTTTATGGGGAAAGACAATGTGCCATTTCACACTGTGATGTTTCCCTCTACCCA 1050
Query 873 TCTTGGAACTG-GTGAAGATTGGACTA-TGATGAAGACAGTTAGTGTGACTGATTATTTA 930
|||||||||| | ||| ||||||| | | ||||||||| | ||||||||||| ||||||
Sbjct 1051 GCTTGGAACTGAG-GAAAATTGGAC-ACTCATGAAGACAATCAGTGTGACTGAATATTTA 1108
Query 931 AATTACGAAGGCGGAAAGTTTTCGGAGAGTAAAGGTGTTGGAGTGTTTGGTAATGATGTG 990
|| || |||| ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1109 AACTATGAAGACGGAAAGTTCTCCAAGAGTAAAGGTGTTGGAGTGTTTGGTAATGATGTA 1168
Query 991 AAAGATACAAATATCCCTGTCGAAGTATGGAGATACTACTTGCTGACCAACAGGCCAGAG 1050
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1169 AAAGATACAAATATACCTGTCGAAGTGTGGAGATACTACTTGCTGACCAACAGGCCTGAG 1228
Query 1051 AAGTCTGATACAACATTTAAATGGGA-TGATTTCCAAA-AGAAACTTAATCACGAGTTGC 1108
|||||| ||| | ||| |||| | |||||| ||| | ||||| ||| ||||||||
Sbjct 1229 GTGTCTGACACATCGTTTTCATGG-ACTGATTTGCAAGCA-AAACTGAATGGCGAGTTGC 1286
Query 1109 T-AGCGAACCTTGGAAACTTTGTTTATCTAGTTTTGAGTTTTATAGCAAAGCCT 1161
| ||| ||||| || ||||||||| ||| |||| ||||||||||||||||||||
Sbjct 1287 TGAGC-AACCTAGGCAACTTTGTTAATCGAGTTCTGAGTTTTATAGCAAAGCCT 1339
Score = 438 bits (237), Expect = 9e-122
Identities = 394/468 (84%), Gaps = 18/468 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGACGAAAGCAAGATC-GTCCCCAAGTTGCCAAT-CCTAGGCAAGAGAAATATAC 58
||||||||||| |||||| | | ||||||||| || || ||| || |||||||||||||
Sbjct 83 ATGGAAGACGACGGCAAGAGCAG-CCCCAAGTTACCGATCCCT-GGAAAGAGAAATATAC 140
Query 59 TAATCACCAGTGCTTTGCCTTACGTCAACAACGTACCACATCTAGGAAACATCATTGGTT 118
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || |
Sbjct 141 TAATCACCAGTGCTTTGCCTTACGTCAACAACGTTCCTCATCTCGGAAACATCATCGGAT 200
Query 119 GTGTTCTAAGTGCTGATGTCTACGCTAGATATTGTCGTCTACGTGGCTATAACACAATCT 178
||||||| || |||||||| || |||||||| |||||||| ||||||||||| | || |
Sbjct 201 GTGTTCTGAGCGCTGATGTGTATGCTAGATACTGTCGTCTCCGTGGCTATAATGCGATTT 260
Query 179 ACATATGTGGAACCGATGAATATGGAACTGCAACAGAGACAAAAGCTTTAGAGGAAAATT 238
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||
Sbjct 261 ACATATGTGGAACCGATGAATATGGGACTGCAACTGAGACCAAAGCTTTGGAGGAGAATT 320
Query 239 GTACACCGAAAGAGATTTGTGACAAGTACCATGCAATTCATCAAG---TTTATGATTGGT 295
| || || || || || ||||||||||||||||| |||||| ||| ||||||| ||||
Sbjct 321 GCACCCCCAAGGAAATCTGTGACAAGTACCATGCCATTCATAAAGAAGTTTATGACTGGT 380
Query 296 TTGATATAAGTTTTGATAAGTTTGGTCGAACTTCAACTCCTGAGACAAA---AGTT-TGT 351
||| |||||||||||| |||||||| |||||||||||||| || ||| | || | ||
Sbjct 381 TTGGTATAAGTTTTGACAAGTTTGGGCGAACTTCAACTCCAGA-ACAGACTGAGGTGTGC 439
Query 352 CAAG-AGATTTTCAACAAGTTGTGGGAAAACGAA-TGGATTTCTGAAGAT-ACTATGAAA 408
|||| | |||||||||||||||||||| ||| || ||| |||| || || || ||| |
Sbjct 440 CAAGCA-ATTTTCAACAAGTTGTGGGACAAC-AAGTGGCTTTCAGA-GAACACCATGCAG 496
Query 409 CAACCTTATTGTGATACATGCAAGAAGTTTTTAGCTGATCGTCTTGTT 456
|| | ||| || ||||||||||||||||| |||||||| || ||||||
Sbjct 497 CAGCTTTACTGCGATACATGCAAGAAGTTCTTAGCTGACCGGCTTGTT 544
Score = 390 bits (211), Expect = 2e-107
Identities = 389/472 (82%), Gaps = 24/472 (5%)
Strand=Plus/Plus
Query 1182 ATCACTTGCTGAATATGCTGGAAAA-TTGGTGG-AGGACTATGTTAAAGTTATGGAAAAA 1239
|||||| || ||| | | | ||||| || |||| | || |||||| ||| ||||||||
Sbjct 1405 ATCACTGGCGGAA-AAGGTTGAAAAGTTTGTGGCA-GAGTATGTTGAAGCCATGGAAAAG 1462
Query 1240 GTTAAGCTCAAGAAAGGG-CTTCATACCACAATGCT-CTTATCGAA-TGAAGGGAACACA 1296
|||||||||||| |||| || | || | ||||| || || || ||||||||| |
Sbjct 1463 GTTAAGCTCAAG-CAGGGACTGAAAACTGCTATGCTGATT-TC-AAGCGAAGGGAAC-TA 1518
Query 1297 -TACTTGCAGG-ATA-CCAATTTTTGGGAACTCTACAAAAAAGATAAACCGTCT-TGTGC 1352
|||||||||| | | |||| |||||| |||| ||||| |||||||||| | | |||||
Sbjct 1519 TTACTTGCAGGCA-AGCCAA-TTTTGGAAACTTTACAAGGAAGATAAACC-TTTGTGTGC 1575
Query 1353 AGTTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCACGATTGTTAGAACCTTT 1412
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1576 AGTTGTTATAAGAACTGCTGCTGGTTTAGTACACCTTCTTGCTCAATTGTTAGAACCTTT 1635
Query 1413 CATGCCATCTTTTTCTCGTGAGGTATTTAAACAGCTGAATTTGCCACCACATTTTTCACT 1472
||||||||| |||||| ||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 1636 CATGCCATCCTTTTCTTGTGAGGTATTTAAACAGCTAAATTTGCCTCCACAATTTTCTCT 1695
Query 1473 CTCCGAAGAGAAAGGAGAGGTATTACAAGCAAGTAGTCTTTGGGAGATTCTTCCTTCCAA 1532
|||||| |||| ||||||||||||| ||||||||| | ||||| ||||| ||| || |
Sbjct 1696 CTCCGACGAGAGGGGAGAGGTATTACTAGCAAGTAGACCATGGGATATTCTGCCT-CCTA 1754
Query 1533 -CCACAGGATTGGAACACCTCAACCATTGTTCAAGAAAATGGAAGAGGAAGA-GATGAAA 1590
||||||||| || || |||||||| ||||||||| | ||||| | || || | || |
Sbjct 1755 GCCACAGGATAGGCACCCCTCAACCTTTGTTCAAGGAGTTGGAAAACGACGAAG-TGGCA 1813
Query 1591 CATTACAGAGAAAAGTTTGCTGGAAGTCAAG-CTGATAGACTTGCTAGGGAT 1641
| |||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 1814 CGGTACAGAGAAAAGTTTGCTGGAAGTCA-GTCTGATAGACGTGCTAGGGAT 1864
> AT5G02690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant
structures; EXPRESSED DURING: 9 growth stages; Has 2 Blast
hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:607190-607704 FORWARD
LENGTH=360
Length=360
Score = 122 bits (66), Expect = 1e-26
Identities = 74/78 (95%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1654 ATGGCAAGACTTGATATTCGAGTAGGTAAAATTGTGAAGGCTGAGAAACATCCTAAGGCA 1713
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 283 ATGGCAAGACTTGATATTCTATTAGGTAAAATTGTGAAGGCTGAGAAACATCCTAAGGCA 342
Query 1714 GATTCATTGTATGTAGAA 1731
|| ||||||||||||||
Sbjct 343 AATGCATTGTATGTAGAA 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5