BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315425
Length=2637
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04810.1 | Symbols: | 26S proteasome regulatory complex, no... 1351 0.0
AT2G32730.1 | Symbols: | 26S proteasome regulatory complex, no... 767 0.0
AT1G58025.2 | Symbols: | DNA-binding bromodomain-containing pr... 86.1 2e-15
> AT1G04810.1 | Symbols: | 26S proteasome regulatory complex,
non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr1:1350180-1355442
FORWARD LENGTH=3311
Length=3311
Score = 1351 bits (731), Expect = 0.0
Identities = 1076/1237 (87%), Gaps = 46/1237 (4%)
Strand=Plus/Plus
Query 1356 GGCAAATGAGATGCTCGCTTATGCTCACAAGACTCAGCATGCG-A-A-AAT-A----A-- 1405
||||| |||||||||||||||||||||| |||||||||||| | | | ||| | |
Sbjct 1738 GGCAAGTGAGATGCTCGCTTATGCTCACGAGACTCAGCATGAGAAGATAATAAGGGGATT 1797
Query 1406 ---T-AAGGAATAGCTCTCACAGTATAT-GTAGAGAAGAGGGAGCAGATACTTTGATTGA 1460
| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1798 GGCTCTAGGAATAGCTCTCACAGTATATGGAAGAGAAGAGGGAGCAGATACTTTGATTGA 1857
Query 1461 GCGGATGACTAGAGATCAGGATCCTATAATTCGTTATGGTGGAATGTATGCACTGGCATT 1520
|| |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1858 GCAGATGACTAGAGATCAGGATCCTATCATCCGTTATGGTGGAATGTATGCACTCGCATT 1917
Query 1521 GGCTTACAGAGGAACCGCAAACAGCAAAGCCATCCGCCAACTTCTGCACTTTGCTGTCTC 1580
||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 1918 GGCTTACAGTGGAACTGCAAACAACAAAGCCATCCGCCAACTTCTTCACTTTGCTGTGTC 1977
Query 1581 TGATGTCAGTGACGATGTCAGGAGGACTGCTGTTCTTGCACTTGGATTTGTCTTATACTC 1640
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 TGATGTCAGTGACGATGTTAGGAGGACTGCTGTTCTTGCACTTGGATTTGTCTTATACTC 2037
Query 1641 TGATCCAGAGCAGACTCCCTGTGTTGTTTCCCTGCTTTCCCAGTCATACAATCCGCATGT 1700
||||||||||||||||||| || |||| ||||| |||||| |||| |||||||| |||||
Sbjct 2038 TGATCCAGAGCAGACTCCCCGTATTGTATCCCTTCTTTCCGAGTCGTACAATCCACATGT 2097
Query 1701 CCGCTATGGCGCGGCTCTTGCCGTAGGCATCTCCTGTGCAGGCACTGGCCTGAGTGAGGC 1760
|||||||||||| |||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 2098 CCGCTATGGCGCAGCTCTTGCAGTTGGCATCTCTTGTGCAGGCACTGGTCTGAGTGAGGC 2157
Query 1761 TATATCCTTGCTGGAGCCACTTACATCAGATGTGGTTGACTTTGTTCGACAAGGTGCTCT 1820
||||| ||| |||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 2158 GATATCTTTGTTGGAGCCACTTACATCAGATGTTGTAGACTTTGTTCGTCAAGGTGCTCT 2217
Query 1821 GATTGCCATGGCGATGGTGATGGTCCAAATTAGTGAAGCAAGCGAATCTCGCGTTGGAGC 1880
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2218 GATTGCCATGGCCATGGTGATGGTCCAAATTAGTGAAGCAAGCGATTCTCGCGTTGGAGC 2277
Query 1881 GTTTAGGCGCCAACTTGAGAAGATAATACTCGACAAGCGTGCAGATGA-AATAAGCAAGA 1939
|||||||| |||||||||||||||||||| ||||||| || |||| | ||| |||||||
Sbjct 2278 ATTTAGGCGTCAACTTGAGAAGATAATACTTGACAAGCATGAAGAT-ACAATGAGCAAGA 2336
Query 1940 TGGGAGCAATTTTGGCTTCAGGTATTCTTGATGCTGGCAGAAGGAATGTGACAATACGAC 1999
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 2337 TGGGAGCAATTTTGGCTTCAGGTATTCTTGATGCTGGTGGAAGGAATGTGACGATAAGAC 2396
Query 2000 TTCTCTCTAAGACAAAACATGACAAAGTTACTGCGGTCATTGGCCTTGCTGTCTTCAGCC 2059
| || ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 2397 TGCTGTCTAAGACAAAACATGACAAAGTCACTGCAGTCATTGGCCTTACTGTCTTCAGCC 2456
Query 2060 AGTCTTGGTATTGGCACCCGCTGATTTACTTCATCAGCTTGGCGTTTTCACCGACCGCGT 2119
||| |||||||||| |||| ||||||||||||| ||||||||||||||||| ||||| |
Sbjct 2457 AGTTTTGGTATTGGTACCCATTGATTTACTTCATAAGCTTGGCGTTTTCACCCACCGCCT 2516
Query 2120 TTATTGGTTTGAACTATGATCTCAAATTCCCAAAGTTTGAATTCATGTCGCATGCAAAAC 2179
| || ||||||||||| ||||||||| |||||||||||||||||||||| || |||||||
Sbjct 2517 TCATCGGTTTGAACTACGATCTCAAAGTCCCAAAGTTTGAATTCATGTCACACGCAAAAC 2576
Query 2180 CATCTTTGTTTGAGTATCCAAAACCAACTTCGGTTGTTACTGCCTACTCGGCCGCCAAAT 2239
|||| |||||||||||||||||||||||| |||||| ||||||| || | || |||||||
Sbjct 2577 CATCGTTGTTTGAGTATCCAAAACCAACTACGGTTGCTACTGCCAACACCGCTGCCAAAT 2636
Query 2240 TACCAACTGCTGTGCTCTCAACCTCAGCAAAAGCCATTAAATCTAGGGATAAGAACGAAG 2299
|||||||||||||||||||||||||||| ||||||| || ||| || |||||| ||||
Sbjct 2637 TACCAACTGCTGTGCTCTCAACCTCAGCCAAAGCCA--AAG-CTAAGGCTAAGAAAGAAG 2693
Query 2300 CAGGGCAGAAAGTTATCGCTCAAAAAGCAGCCAGTGCCGC---AAC-GTCT-TGCAATGA 2354
||| |||||||| || ||| |||| | | || || || || | | |||| |
Sbjct 2694 CAGAGCAGAAAGCTAAAGCTGAAAACTCTGGCAATGAAGCTGGAAAAGCCAATGCAGCGT 2753
Query 2355 CAG-TG-GA-G-A--CA----CTATGCTGGTCGATAGCACAGCAATA-C--TGGAGAAGA 2401
||| || || | | || |||||| ||| ||||||||||| | | | |||||||||
Sbjct 2754 CAGATGAGAAGGAAGCAGAGTCTATGCAGGTTGATAGCACAGCTACAACGGTGGAGAAGA 2813
Query 2402 AGGCTGAGTCAGAAGCAATGTTTGAGATTCTAG-CTAACCCCGCACGGGTACTCCCTGCA 2460
||| |||| ||||||||| |||||||||||||| | || || || || ||| ||||| ||
Sbjct 2814 AGGTTGAGCCAGAAGCAACGTTTGAGATTCTAGTC-AATCCTGCGCGTGTAGTCCCTTCA 2872
Query 2461 CAGGAGAAATACATAAAGAT-GATAGAG-AGCGGCAGATACGTACCGATGAAGCTAGCTT 2518
|||||||||||||| || || ||| ||| | | | |||| ||||||||||||||||||
Sbjct 2873 CAGGAGAAATACATCAA-ATTGATGGAGGATAGCC-GATATGTACCGATGAAGCTAGCTC 2930
Query 2519 CATCAGGGTTCGTCCTTCTCA-AGGACTTGCATCCGC 2554
|||||||||| |||||||||| || |||||| |||||
Sbjct 2931 CATCAGGGTTTGTCCTTCTCAGAG-ACTTGCGTCCGC 2966
Score = 920 bits (498), Expect = 0.0
Identities = 779/911 (86%), Gaps = 33/911 (4%)
Strand=Plus/Plus
Query 13 ATGATTAGTT-CGGCGAGTAGTG-TACTCGCAATGCTCAACGAAACACATCCTTCAC-TG 69
||| |||||| || || || | | |||| ||||||||||||||| | |||||||| | ||
Sbjct 137 ATGGTTAGTTCCGCCG-GT-GGGTTACTGGCAATGCTCAACGAACCCCATCCTTC-CTTG 193
Query 70 AAACTTCAAGCGCTCAT-AAATCTCAACAGATTTGTTCATCAATTTTGGCCAGAGATCTC 128
|||||||| || ||| | | |||||| |||||| ||| | ||||||||||| ||||||||
Sbjct 194 AAACTTCACGCTCTC-TCATATCTCATCAGATTGGTTGACCAATTTTGGCCCGAGATCTC 252
Query 129 CGCTAGCCTCCCAATCTTAGAGTGCTTATATAAAGATGAAAAGTTCAATCAGCATCTAAG 188
| |||| |||||||| ||||| ||||||| |||||||| |||| ||||||||| |||
Sbjct 253 CACTAGTGTCCCAATCATAGAGAGCTTATACGAAGATGAAGAGTTTGATCAGCATCAAAG 312
Query 189 ACAGCTTGCTGCATTGCTT-ATCTCTAAGGTTTTCTATTACTTGGGTGAGCTTAACAATT 247
|||||||||||| ||| || ||| |||||||||||||||||||||||||||||| |||
Sbjct 313 ACAGCTTGCTGCCTTG-TTGGCCTCCAAGGTTTTCTATTACTTGGGTGAGCTTAACGATT 371
Query 248 CATTGTCCTATGCCCTTGGAGCTGGATCTTTGTTTGCTGTGCT-TGATGAATCTGATTAC 306
| |||||||||||||||||||||||||| ||||||| |||| | || || ||||||||
Sbjct 372 CCTTGTCCTATGCCCTTGGAGCTGGATCCTTGTTTGATGTG-TCAGAGGATTCTGATTA- 429
Query 307 T-TTAATACTCTTCTAGCCAAAGCAATAGATGAGTATGCTAGTCTCAGATGGAAGGCAAT 365
| || ||||||||||| |||||||||||||||||||||||| |||||||| |||||| |
Sbjct 430 TATTCATACTCTTCTATCCAAAGCAATAGATGAGTATGCTATTCTCAGATCAAAGGCAGT 489
Query 366 CGAGTTAAATGAGATGGTGGTGGACATTGACCAC-AGACTGGAGGCTATTGTTGAACAAA 424
|||| | || | || ||||||||| ||||||| | ||| ||| ||| |||||||||| ||
Sbjct 490 CGAG-TCAA-GTGA-GGTGGTGGAAATTGACC-CGAGATTGGTGGCCATTGTTGAACGAA 545
Query 425 TGTTGGAAAAATGTATCAGTGATGGAAAGTATCAACAAGCCATGGGCATTGCTATAGAAT 484
|| | || |||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 546 TGCTAGACAAATGTATCACTGACGGAAAGTATCAACAAGCCATGGGCATTGCTATAGAAT 605
Query 485 GCCGGAGATTGGATAAGTTGGAAGAAGCTATAACGAAGAGCAAAGA-TGTTCAGAAAAGT 543
|||||||||||||||||||||| ||||| || | ||||| | || ||| ||| ||
Sbjct 606 GCCGGAGATTGGATAAGTTGGAGGAAGCGATCATAAAGAGTGA-GAATGTGCAGGGAACA 664
Query 544 TTATCTTATTGCATCAATGTTTCTCACTCTTTTATTAACCGTAGAGAATATAGATTTGAG 603
|||||||| |||||||||||||| ||||||||| |||| | |||||||||||| ||||
Sbjct 665 TTATCTTACTGCATCAATGTTTCCCACTCTTTTGTTAATCAAAGAGAATATAGACATGAG 724
Query 604 GTTCTTCGGTTACTTGTTAATGTCTACCAGAAGCTGACTTGTCCTGATTATTTGAGCATT 663
||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||
Sbjct 725 GTTCTTCGGTTACTTGTTAATGTTTACCAGAAGCTGGCTTCTCCTGATTATTTGAGCATT 784
Query 664 TGCCAGTGCCTTATGTTCTTGGATGAACCGCAAGGTGTTGCAAGCATATTGGAGAAACTT 723
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 785 TGCCAATGCCTTATGTTCTTGGATGAACCACAAGGCGTTGCAAGCATATTGGAGAAGCTT 844
Query 724 CTTCGTTCGGAGGACAAGGATGATGCTTTACTGGCGTTGCAAAT-TGCTTTTGATCTTGT 782
|||||||| ||| |||| |||||||||||| |||| || ||||| | |||| ||||||||
Sbjct 845 CTTCGTTCAGAGAACAAAGATGATGCTTTATTGGCTTTCCAAATCT-CTTTCGATCTTGT 903
Query 783 AGAGAACGAGCACCAGGCATTCCTCATGAGTGTTAGAGA-CAGCCTTCCA------ATGA 835
| |||| |||||||||||||||||||||||||||||||| | |||||||| | ||
Sbjct 904 ACAGAATGAGCACCAGGCATTCCTCATGAGTGTTAGAGATC-GCCTTCCAGCGCCCAAGA 962
Query 836 CCCTTCCTGTAGTAGCAGTTCAAGCTGCTGAAACCTGTACCGCTCAGAGGGAGAACACTG 895
||| |||||||| |||| ||||||||| |||||||| ||| ||||||| ||||||||||
Sbjct 963 CCCGTCCTGTAGAAGCAATTCAAGCTGTTGAAACCTCTACTGCTCAGAATGAGAACACTG 1022
Query 896 TC-GGGGATGT 905
| ||||||||
Sbjct 1023 -CAGGGGATGT 1032
> AT2G32730.1 | Symbols: | 26S proteasome regulatory complex,
non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr2:13880046-13885736
FORWARD LENGTH=3430
Length=3430
Score = 767 bits (415), Expect = 0.0
Identities = 700/834 (84%), Gaps = 33/834 (4%)
Strand=Plus/Plus
Query 13 ATGATTAGTTCGGC--GAGTAGTGTACTCGCAATGCTCAACGAAACACATCCT-TCACTG 69
||| ||||||| || ||| | | |||| |||||||||||||| | |||||| | ||
Sbjct 156 ATGGTTAGTTCCGCTGGAGGA-T-TACTAGCAATGCTCAACGAGCCTCATCCTGT-TTTG 212
Query 70 AAACTTCAAGCGCTCAT-AAATCTCAACAGATTT-GTTCATCAATTTTGGCCAGAGATCT 127
|| ||||| |||||| | || ||||||| |||| ||| | ||||| ||||| |||||||
Sbjct 213 AAGCTTCATGCGCTC-TCTAACCTCAACA-ATTTGGTTGACCAATTCTGGCCTGAGATCT 270
Query 128 CCGCTAGCCTCCCAATC-TTAGAGTGCTTATATAAAGATGAA-AAGTTCAATCAGCATCT 185
|| |||| |||| ||| || ||| | |||||| |||||||| || ||| ||| |||||
Sbjct 271 CCACTAGTGTCCCCATCATT-GAGAGTTTATATGAAGATGAAGAA-TTCGATCTGCATCA 328
Query 186 AAGACAGCTTGCTGCATTGCTTATCTCTAAGGTTTTCTATTACTTGGGTGAGCTTAACAA 245
||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 329 AAGACAGCTTGCTGCTTTGCTGGTCTCTAAGGTTTTCTATTACTTGGGCGAGCTTAATGA 388
Query 246 TTCATTGTCCTATGCCCTTGGAGCTGGAT-CTTTGTTTGCTG-TGCTTGATGAATCTGAT 303
||| |||| |||||||| ||||| || | | || |||| || | | || || ||||||
Sbjct 389 TTCGCTGTCTTATGCCCTAGGAGCCGG-TCCCTTATTTGATGTTTC-AGAGGATTCTGAT 446
Query 304 TACT-TTAATACTCTTCTAGCCAAAGCAATAGATGAGTATGCTAGTCTCAGATGGAAGGC 362
|| | || |||| ||||| |||||||||||||| || ||||| |||||||||| |||||
Sbjct 447 TA-TGTTCATACGCTTCTGGCCAAAGCAATAGACGAATATGCCAGTCTCAGATCAAAGGC 505
Query 363 AATCGAGTTAAATGAGATGGTGGTGGACATTGA-CCACAGACTGGAGGCTATTGTTGAAC 421
| | |||| |||||||| ||||||||||||| || ||| || ||||| |||||||||
Sbjct 506 AGTTGAGTCAAATGAGA---TGGTGGACATTGATCC-CAGGCTAGAGGCGATTGTTGAA- 560
Query 422 A-AATG-TTGGAAAAATGTATCAGTGATGGAAAGTATCAACAAGCCATGGGCATTGCTAT 479
| |||| |||| |||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 561 AGAATGCTTGG-AAAATGCATCAGTGATGGGAAGTATCAACAAGCCATGGGCATTGCGAT 619
Query 480 AGAATGCCGGAGATTGGATAAGTTGGAAGAAGCTATAACGAAGAGCAA-AGATGTTCAGA 538
|||||||||||||||||||||||||||||||||||| | |||||| | | ||||||||
Sbjct 620 AGAATGCCGGAGATTGGATAAGTTGGAAGAAGCTATCATTAAGAGCGATA-ATGTTCAGG 678
Query 539 AAAGTTTATCTTATTGCATCAATGTTTCTCACTCTTTTATTAACCGTAGAGAATATAGAT 598
|| |||||| |||||||||||||||||||| || ||| | ||||| ||||| || |||
Sbjct 679 GAACTTTATCATATTGCATCAATGTTTCTCATTCCTTTGTCAACCGCAGAGAGTACAGAC 738
Query 599 TTGAGGTTCTTCGGTTACTTGTTAATGTCTACCAGAAGCTGACTTGTCCTGATTATTTGA 658
|||||| ||| | |||||||| || ||||||||||||||| | | ||||||||||||||
Sbjct 739 ATGAGGTGCTTAGTTTACTTGTAAAAGTCTACCAGAAGCTGCCCTCTCCTGATTATTTGA 798
Query 659 GCATTTGCCAGTGCCTTATGTTCTTGGATGAACCGCAAGGTGTTGCAAGCATATTGGAGA 718
||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 799 GCATTTGTCAATGCCTCATGTTTTTGGATGAACCGCAAGGTGTTGCAAGCATATTGGAGA 858
Query 719 AACTTCTTCGTTCGGAGGACAAGGATGATGCTTTACTGGCGTTGCAAATTGCTTTTGATC 778
| |||||||| || ||| ||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 859 AGCTTCTTCGCTCAGAGAACAAGGATGATGCTTTATTGGCATTGCAAATTGCATTTGATC 918
Query 779 TTGTAGAGAACGAGCACCAGGCATTCCTCATGAGTGTTAGAGA-CAGCCTTCCA 831
|||||||||||||||||||||| || ||| ||||||||||||| | ||||||||
Sbjct 919 TTGTAGAGAACGAGCACCAGGCCTTTCTCTTGAGTGTTAGAGATC-GCCTTCCA 971
> AT1G58025.2 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:21457667-21462243 REVERSE LENGTH=2046
Length=2046
Score = 86.1 bits (46), Expect = 2e-15
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 389 ACATTGACCACAGACTGGAGGCTATTGTTGAACAAATGTTGGAAAA 434
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 ACATTGACCACAGACTGGAGGCTATTGTTGAACAAATGTTGGAAAA 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130935721230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5