BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315436
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RI... 2521 0.0
AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type RI... 1378 0.0
AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type RI... 946 0.0
AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type RI... 898 0.0
AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type RI... 893 0.0
AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:... 713 0.0
> AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:21414170-21417946 REVERSE
LENGTH=2154
Length=2154
Score = 2521 bits (1365), Expect = 0.0
Identities = 1709/1876 (91%), Gaps = 19/1876 (1%)
Strand=Plus/Plus
Query 1 ATGGCGCGTGACATCCAACTCCCCTGCGACGGCGACGGTGTATGCATGCGATGCAAATCC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 45 ATGGCGCGTGACATCCAACTCCCCTGCGACGGCGACGGCGTATGCATGCGATGCAAATCC 104
Query 61 AAACCTCCGCCTGAAGAATCTCTCACTTGCGGCACGTGCGTTACGCCGTGGCACGTGTCC 120
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 105 AACCCTCCGCCTGAAGAATCTCTCACTTGCGGCACGTGCGTTACACCGTGGCACGTGTCC 164
Query 121 TGTCTCTCAACCCCACCCGAAACCCTAGCTTCTACTTTACAGTGGCATTGTCCTGATTGC 180
|||||||| | || ||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 165 TGTCTCTCTTCACCTCCCAAAACCCTAGCTTCCACTCTACAGTGGCATTGTCCTGATTGC 224
Query 181 TCCGGCGAAATCGATCCTCTTCCTGTTTCCGGCGACGTTTCTGGTTAT-GGATCTGTTGG 239
|||||||||||||||||||||||||||||||||| | | |||||| | | ||||| |||
Sbjct 225 TCCGGCGAAATCGATCCTCTTCCTGTTTCCGGCGGTGCTACTGGTT-TCGAATCTGCTGG 283
Query 240 TTCAGATCTTGTTGCAGCGATTCGCGCGATTGAGGCTGATGAGTCGCTGAGTACTGAAGA 299
||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 284 GTCAGATCTTGTAGCTGCGATTCGTGCGATTGAGGCTGATGAGTCGTTGAGTACTGAAGA 343
Query 300 GAAAGCTAAGAAGAGGCAACGGTTGTTAAGTGGTAAAGGCGTCGTTGA-G--GATGACG- 355
||||||||||| |||||||||||| | ||||||||||| || | || | ||||| |
Sbjct 344 GAAAGCTAAGATGAGGCAACGGTTACTGAGTGGTAAAGGTGTTGAGGAGGATGATGAAGA 403
Query 356 A-AGAAGA-GAAGAAG-A--GTAAAGGGAAGAATTCGAATCTCGATGTTTTATCAGCTCT 410
| |||||| ||||||| | | |||||||||||| ||||||| ||||| ||||| |||||
Sbjct 404 AGAGAAGAGGAAGAAGAAGGGGAAAGGGAAGAATCCGAATCTGGATGTGTTATCTGCTCT 463
Query 411 TGGAGATAACTTGATGTGTTCTTTCTGTATGCAATTGCCTGAGAGACCTGTGACGAAACC 470
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 464 TGGAGATAACTTGATGTGTTCTTTCTGTATGCAGTTGCCTGAGAGACCTGTGACGAAACC 523
Query 471 ATGTGGGCACAACGCTTGCTTGAAATGTTTTGAGAAGTGGATGGGGCAGGGCAAGCGAAC 530
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||||
Sbjct 524 ATGTGGGCACAACGCTTGCTTAAAATGTTTTGAGAAATGGATGGGGCAGGGAAAGAGAAC 583
Query 531 TTGTGGTAAATGCCGAAGCGTAATTCCGGAGAAAATGGCTAAGAATCCCCGTATCAACTC 590
||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 584 TTGTGGTAAATGCCGCAGCATAATTCCTGAAAAAATGGCTAAGAATCCCCGTATCAACTC 643
Query 591 GTCCCTTG-TGTCTGCTATTAGATTAGCGAAAGTATCTAAAAGTGCTGCTGCGGGTACTT 649
||| |||| || |||| ||| ||||||| ||||| |||||||||||||||||| ||||
Sbjct 644 GTCTCTTGTTG-CTGCCATTCGATTAGCAAAAGTCTCTAAAAGTGCTGCTGCGACCACTT 702
Query 650 CAAAGGTCTTTCATTTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGC 709
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 703 CAAAGGTCTTTCATTTCATCAGCAACCAAGACCGACCAGATAAAGCATTTACAACCGAGC 762
Query 710 GTGCAAAGAAAACTGGGAAGGCGAACGCTGCTAGTGGAAGGATTTATGTTACAATACCAC 769
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 763 GTGCAAAGAAAACTGGCAAGGCAAACGCTGCTAGTGGAAAGATTTATGTTACAATACCAC 822
Query 770 CAGATCACTTTGGTCCTATACCAGCTGAAAACGATCCTGTCAGGAACCAAGGTCTTTTGG 829
||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 823 CAGATCATTTTGGTCCTATTCCAGCTGAAAATGACCCTGTCAGGAACCAAGGTCTTTTGG 882
Query 830 TTGGAGAATCCTGGGAAGACAGACTCGAGTGTAGGCAGTGGGGGGCTCACTTCCCACATG 889
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 883 TTGGAGAATCCTGGGAGGACAGACTCGAGTGTAGGCAGTGGGGTGCTCATTTCCCACATG 942
Query 890 TTGCTGGCATTGCTGGACAATCAAATTATGGAGCTCAATCTGTAGCACTCTCTGGAGGTT 949
|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 943 TTGCTGGCATTGCTGGACAATCTACTTATGGCGCTCAATCTGTAGCACTCTCTGGAGGTT 1002
Query 950 ATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATC 1009
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1003 ATAAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGTAGAGATC 1062
Query 1010 TCAGTGGCAACAAAAGGACTAATAAGGAGCAGTCCTTTGATCAAAAATTTGAAAAGTCTA 1069
|||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||
Sbjct 1063 TCAGTGGCAACAAAAGGACTAACAAGGAGCAGTCTTTTGACCAAAAGTTTGAGAAGTCTA 1122
Query 1070 ATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTCACA 1129
||| ||| |||| ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1123 ATGCAGCATTAAAACTCAGCTGCAAATTGGGGTATCCTGTTCGAGTTGTCAGGTCTCACA 1182
Query 1130 AGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGGTGTACCGGA 1189
||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1183 AGGAGAAGCGTTCTGCATACGCCCCTGAGGAAGGAGTGAGATATGATGGGGTTTACAGGA 1242
Query 1190 TCGAGAAGTGCTGGCGGAAAGTTGGTA-TACAGGGTTCTTTCAAGGTCTGTCGTTACCTG 1248
| |||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 1243 TTGAGAAGTGCTGGCGCAAAGTTGG-AGTACAGGGTTCTTTTAAGGTCTGTCGTTACCTG 1301
Query 1249 TTTGTTAGATGTGATAATGAGCCAGCTCCATGGACTAGTGATGAGCATGGAGATCGCCCA 1308
|| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||
Sbjct 1302 TTCGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGAATGGAGATCGTCCA 1361
Query 1309 AGACCTTTGCCTAATATTCCAGAGCTGAATATGGCCACAGACCTGTTTGAGAGAAAAGAA 1368
|||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1362 AGACCTATCCCTAATATTCCAGAGCTTAATATGGCCACCGACCTGTTTGAGAGAAAAGAA 1421
Query 1369 AGTCCATCATGGGATTTTGATGAAGGTGAGGGTTCTTGGAGATGGATGAAGCCGCCACCT 1428
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1422 ACTCCATCATGGGATTTTGATGAAGGTGAGGGTTGTTGGAAATGGATGAAGCCGCCACCT 1481
Query 1429 GCTAGTAAAAAGTCAGTGAATGTTTTGGATCCTGAGGAGAGGAAAACTTTGAGGAAAGCC 1488
|| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1482 GCAAGTAAAAAGTCAGTGAATGTTTTGGCTCCTGAGGAGAGGAAAAATTTGAGGAAAGCC 1541
Query 1489 ATAAAGGCAGCACACTCGAATACCATGAGGGCAAAACTTCTGAAAGAATTTAAGTGCCAG 1548
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1542 ATAAAGGCGGCACACTCGAATACCATGAGGGCAAGACTTCTGAAAGAATTTAAGTGCCAG 1601
Query 1549 ATCTGTCGGCAAGTGCTGACTCTTCCAGTGACAACGCCGTGTGCTCATAACTTCTGCAAG 1608
||||||| ||||||| |||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1602 ATCTGTCAGCAAGTGTTGACTCTTCCTGTGACAACACCCTGTGCTCATAACTTCTGCAAG 1661
Query 1609 GCATGCTTAGAAGCCAAATTTGCTGGGAAAACGCTAGTGAGGGAGAGAAGCAGAGGTGGA 1668
|| ||||||||||| ||||||||||||||||| || ||||| |||||||||| |||||||
Sbjct 1662 GCTTGCTTAGAAGCGAAATTTGCTGGGAAAACTCTTGTGAGAGAGAGAAGCACAGGTGGA 1721
Query 1669 CGAACTCTACGAGCACAG-AAGAATGTGATGAACTGCCCTTCTTGCCCCACTGACATTTC 1727
|| || ||||| || || |||||||| |||||||||||| |||||| || ||||| ||
Sbjct 1722 CGGACACTACGCTCA-AGGAAGAATGTCCTGAACTGCCCTTGTTGCCCAACAGACATATC 1780
Query 1728 CGATTTTCTCCAGAACCCTCAGGTCAATAGAGAAGTCAT-GGAGGTCATAGAGAGGTTGA 1786
|||||||| ||||||||||||||||| |||||||| | |||||| ||||||| | | |
Sbjct 1781 TGATTTTCTGCAGAACCCTCAGGTCAACAGAGAAGT-AGCGGAGGTGATAGAGAAGCTAA 1839
Query 1787 AGAATCAGGAAGTGGACAATGCCGAGATTGTAGATGAAGGCGAAGGCGAAGGCTCAGGTA 1846
||| ||||||| ||||| || ||| ||| |||||||| ||||| ||| ||||||| |
Sbjct 1840 AGACCCAGGAAGAGGACACCGCAGAGCTTGAAGATGAAGATGAAGGTGAATGCTCAGGCA 1899
Query 1847 CCAACGCTGAAGAAGA 1862
||| | ||||||||||
Sbjct 1900 CCACCCCTGAAGAAGA 1915
> AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type
RING finger) family protein | chr1:21408623-21412283 REVERSE
LENGTH=2107
Length=2107
Score = 1378 bits (746), Expect = 0.0
Identities = 1268/1508 (84%), Gaps = 83/1508 (6%)
Strand=Plus/Plus
Query 468 ACCATGTGGGCACAACGCTTGCTTGAAATGTTT-TGAGAAGTGGATGGGGCAGGGCA-AG 525
||||||||||||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct 513 ACCATGTGGGCACAACGCTTGCTTGAAATGTTTCT-TGAAGTGGATGGGGCAGGG-ACAC 570
Query 526 CGAACTTGTGGTAA-ATGCCGAAGCGTAATTCCGGAGAA-AATGGCTAAGAATCCCCGTA 583
|| | |||||| || |||||| ||||||||||| || || |||| || ||||||||||
Sbjct 571 CGCAGTTGTGG-AACATGCCGCAGCGTAATTCCTGA-AAGCATGGTTACCAATCCCCGTA 628
Query 584 TCAACTCGTCCCTTGTGTCTGCTATTAGATTAGCGAA-AGTAT-CTAAAAGTGCTGCTGC 641
|||||| |||| |||||||||||||||| ||||| || ||||| | ||||| |||| |||
Sbjct 629 TCAACTTGTCCATTGTGTCTGCTATTAGGTTAGC-AAGAGTATCCGAAAAG-GCTGATGC 686
Query 642 GGGTACTTCAAAGGTCT-TTCA-TTTCATAAGCAATCAAGACCGACCAGATAAAGCATTT 699
| |||||||||| || | |||| | | | | |||| |||| || |||||||||||||||
Sbjct 687 GCGTACTTCAAAAGT-TGTTCACTATGTTGA-CAATGAAGATCGTCCAGATAAAGCATTT 744
Query 700 ACAACTGAGCGTGCAAAGAAAACTGGGAAGGCGAACGCTGCTAGTGG-AAGGATTTATGT 758
||||||||||| || |||||||| ||||| || || ||| | ||||| || ||||| |||
Sbjct 745 ACAACTGAGCGCGCTAAGAAAACAGGGAATGCAAATGCTTCCAGTGGCAA-GATTTTTGT 803
Query 759 TACAATACCACCAGATCACTTTGGTCCTATACCAGCTGAAAACGATCCTGTCAGGAACCA 818
|||||| || | |||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 804 TACAATCCCTCGAGATCATTTTGGTCCTATACCAGCTGAAAATGATCCTGTTAGGAACCA 863
Query 819 AGGTCTTTTGGTTGGAGAATCCTGGGAA-GACAGACTCGAGTGTAGGCAGTGGGGGGCTC 877
||||||||||||||||||||||| |||| | | |||| | ||| |||||||||||||||
Sbjct 864 AGGTCTTTTGGTTGGAGAATCCT-GGAAGGGCCGACTTGCTTGTCGGCAGTGGGGGGCTC 922
Query 878 ACTTCCCACATGTTGCTGGCATTGCTGGACAATCAAATTATGGAGCTCAATCTGTAGCAC 937
|||||||||||||| | ||||||||||||||| | | |||||||||||||||||| | |
Sbjct 923 ACTTCCCACATGTTTCCGGCATTGCTGGACAAGCGAGTTATGGAGCTCAATCTGTTGTGC 982
Query 938 TCTCTGGAGGTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTG 997
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TCGCTGGAGGTTATGATGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTG 1042
Query 998 GGGGAAGAGAT-CTCAGTGGCAACAAAAGGACTAATAAGGAGCA-GTCCTTTGATCAAAA 1055
|||||||| || |||| ||||||||||||||||| | || || | | |||||||||
Sbjct 1043 GGGGAAGA-ATTCTCAAAGGCAACAAAAGGACTAACACGGTTCAAG-CTTTTGATCAAGT 1100
Query 1056 ATTTGAAAAGTCTAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGT 1115
|||| ||| | ||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 1101 ATTTCTAAACTTTAATGAAGCTTTAAGACTTAGTTGTAAACTAGGGTATCCTGTTCGAGT 1160
Query 1116 TGTCAGGTCTCAC-AAGGAGAAGCGTTCTGCATATGCCCCTGA-GGAGGG--AGTGAGAT 1171
|||||||||| || ||||| ||||||||| |||| |||||| | ||||| | | || |
Sbjct 1161 TGTCAGGTCT-ACCAAGGACAAGCGTTCTCCATACGCCCCTCAAGGAGGACTACTAAGGT 1219
Query 1172 ATGATGGGGTGTACCGGATCGAGAAGTGCTGGCGGAAAGTTGGTATACAGGGTTCTTTCA 1231
||||||| || |||||||| ||||| |||||| ||| |||||| |||||| | | |
Sbjct 1220 ATGATGGTGTTTACCGGATAGAGAAATGCTGGAGGATAGTTGGAATACAGA-TG-TG-C- 1275
Query 1232 AGGTCTGTCGTTACCTGTTTGTTAGATGTGATAATGAGCCAGCTCCATGGACTAGTGATG 1291
| || || |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1276 ----C-GT--TT-CCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATG 1327
Query 1292 AGCATGGAGATCGCCCAAGACCTTTGCCTAATATTCCAGAGCTGAATATGGCCACAGACC 1351
|||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1328 AGCATGGAGATCGCCCAAGACCTTTGCCTAATGTTCCTGAGCTTAATATGGCCACAGACC 1387
Query 1352 TGTTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTC-TTGGAGA 1410
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1388 TGTTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGAT-CGTTGGAGA 1446
Query 1411 TGGATGAAGCCGCCACCTGCTAGTAAAAAGTCAGTGAA---TGTTTTGGATCCTGAGGAG 1467
||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 1447 TGGATGAAGCCACCACCTGCTAGTAAAAAGGCAGTTAAAAATGTTTTGGATCCTGAGGAG 1506
Query 1468 AGGAAAACTTT-GAGGAAAGCCATAAAGGCAGCACACTCGAATACCATGAGGGCAAAACT 1526
|||||| |||| |||| ||||||||||| | ||| || |||||||||||||||||| |||
Sbjct 1507 AGGAAA-CTTTTGAGGGAAGCCATAAAGTCGGCAAACCCGAATACCATGAGGGCAAGACT 1565
Query 1527 TCTGAAAGAATTTAAGTGCCAGATCTGTCGGCAAGTGCTGACTCTTCCAGTGACAACGCC 1586
| ||||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||||
Sbjct 1566 TTTGAAAGAATTTAAGTGCCAGATCTGTCAGAAAGTGATGACTAATCCTGTGACAACGCC 1625
Query 1587 GTGTGCTCATAACTTCTGCAAGGCATGCTTAGAAGCCAAATTTGCTGGGAAAACGCTAGT 1646
||||||||||||||||||||||| || || ||| | || |||||||||| | | |||||
Sbjct 1626 TTGTGCTCATAACTTCTGCAAGGCTTGTTTGGAATCGAAGTTTGCTGGGACAGCTCTAGT 1685
Query 1647 GAGGGAGAGAAGCAGAGGTGGACGAAC-TCTACGAGCACAGAAGAATGTGATGAACTGCC 1705
||| |||||| |||| |||||||||| | |||| |||| |||| ||| ||||| ||||
Sbjct 1686 GAGAGAGAGAGGCAGCGGTGGACGAAAAT-TACGTTCACAAAAGAGTGTCATGAAGTGCC 1744
Query 1706 CTTCTTGCCCCACTGACATTTCCGATTTTCTCCAGAACCCTCAGGTCAATAGAGAAGTCA 1765
||| |||||| || |||||| |||| ||| |||||||||||||||||||||||||||| |
Sbjct 1745 CTTGTTGCCCAACGGACATTGCCGAGTTTGTCCAGAACCCTCAGGTCAATAGAGAAGT-A 1803
Query 1766 T-GGAGGTCATAGAGAGGTTGAAGAATCAGGAAGTGGAC-AATGC-CGA-GA-TTGTAGA 1820
|||||| ||||||| | ||||||| ||||||| ||| || | | | | || ||||
Sbjct 1804 GCGGAGGTGATAGAGAAGCTGAAGAAACAGGAAGAGGAGGAAAACGCAAAGTCTT-TAGA 1862
Query 1821 TGAAGGCGAAGGCGAAGGCTCAGGTACCAACGC-TGAAGAAGAAACTCTGGCCGAGTCTG 1879
|||||| | || |||||||||||| | | |||||||||| | | | |
Sbjct 1863 TGAAGGT-----C-AATGCTCAGGTACCAGC-CATGAAGAAGAA-----G----A-T--G 1903
Query 1880 AAGATGCTGAGCAACCGAAGAAACGGATTAAGTTGGACACCGACACAGCAGTTTCTGCGA 1939
| || ||||||| ||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 1904 A---TG---AGCAACCAAAGAAACGGATTAAGTTGGACACTGACGCAGAAGTTTCTGCGA 1957
Query 1940 CTGCTGTG 1947
||| ||||
Sbjct 1958 CTGTTGTG 1965
> AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type
RING finger) family protein | chr5:15837210-15840638 REVERSE
LENGTH=2187
Length=2187
Score = 946 bits (512), Expect = 0.0
Identities = 1118/1399 (80%), Gaps = 88/1399 (6%)
Strand=Plus/Plus
Query 427 TGTTCT-TTCTGTATGCAATTGCCTGAGAGACCTGTGACGAAACCATGTGGGCACAACGC 485
|||||| || || || |||||||| || |||||| | |||| ||| |||||||||||
Sbjct 520 TGTTCTATT-TGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGTGGGCACAA-TT 577
Query 486 T-TGCTTGAAATGTTTTGAGAAGT-GG-A-TGGGGC-AGGGCAAGCGAACTTGTGGT-AA 539
| || ||||||||||| ||||| | || | | || | |||| |||| ||||||| | |
Sbjct 578 TCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGG-AAGCTAACTTGT-ATGAT 635
Query 540 ATGCCGAAGCGTAATTCCGGAGA-AAATGGCTAAGAATCCCCGTATCAAC-TCGTCCCTT 597
|||||||||| |||||| |||| | |||| || ||||| || |||||| | | | ||
Sbjct 636 ATGCCGAAGCAAAATTCC-GAGACATGTGGCAAAAAATCCTCGCATCAACTTAG-CTCTA 693
Query 598 GTGTCTGCTATTAGATTAGCGAAA-G-TATCTAAAAGTGCTGCTGCGGGTACTTCA---A 652
|| ||||||||| | ||||| ||| | || | ||| || ||| || || ||| || |
Sbjct 694 GTTTCTGCTATTCGTTTAGC-AAATGTTA-CCAAATGTTCTGTTGAGGCAACTGCAGCCA 751
Query 653 AGG-TCTTTCAT-TTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGCG 710
||| || |||| || || |||| |||||||| || || ||||||||||| || |||||
Sbjct 752 AGGTTC-ATCATATT-ATCCGCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCG 809
Query 711 TGCA-AAGAAAACTGGGAAGGCGAACGCTGCTAGTGG-AAGGATTTATGTTACAATACCA 768
||| | ||||||||||| || || |||||||| || || | ||| ||| ||||||||
Sbjct 810 GGCAGTA-AAAACTGGGAAAGCTAATGCTGCTAGCGGTAA-GTTTTTTGTGACAATACCT 867
Query 769 CCAGATCACTTTGGTCCTATACCAGCTGAAAACGATCCTGTC-AGGAACCAAGGTCTTTT 827
| ||||| |||||||| ||||||||||| || ||| | | || || |||||| ||||
Sbjct 868 CGTGATCATTTTGGTCCCATACCAGCTGAGAATGAT-GTCACTAGAAAGCAAGGTGTTTT 926
Query 828 GGTTGGAGAATCCTGGGAAGACAGACTCGAGTGTAGGCAGTGGGGGGCTCACTTCCCACA 887
|||||||||||| ||||| ||||| | ||||||||||||||||| ||||| ||||| ||
Sbjct 927 GGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGCTCATTTCCCGCA 986
Query 888 TGTTGCTGGCATTGCTGGACAATCA-AATTATGGAGCTCAATCTGTAGCACTCTCTGGAG 946
| ||||||||||||| || |||||| | ||||||||| ||||| || ||||||||||
Sbjct 987 TATTGCTGGCATTGCCGGGCAATCAGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAG 1045
Query 947 GTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAG 1006
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 1046 GTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGG 1105
Query 1007 ATCTCAGTGGCAACAAAAGGACTAATAAGGAGCAGTCCTTTGATCAAAAATTTGAAAAGT 1066
|||||||||| |||||||| | ||| ||| | ||||| | ||| || ||| ||||
Sbjct 1106 ATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGACCAGGCGTTT-AAAA-A 1163
Query 1067 C-T-AATGAAGCCT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGT 1123
| | |||||| || |||||||||| |||||| |||| |||||||| |||||||||||||
Sbjct 1164 CATGAATGAA-TCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGT 1222
Query 1124 CTCACAAGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGGTGT 1183
|| |||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 1223 CTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAGATATGATGGGGTCT 1282
Query 1184 ACCGGATCGAGAAGTGCTGGCGGAAAGTTGGTA-TACAGGGTTCTTTCAAGGTCTGTCGT 1242
| || || |||||||||||| | || ||||| | ||||||||||||| ||||||||||||
Sbjct 1283 ATCGAATTGAGAAGTGCTGGAGTAATGTTGG-AGTACAGGGTTCTTTTAAGGTCTGTCGT 1341
Query 1243 TACCTGTTTGTTAGATGTGATAATGAGCCAGCTCCATGGACTAGTGATGAGCATGGAGAT 1302
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 1342 TACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGAT 1401
Query 1303 CGCCCAAGACCTTTGCCTAATATTCCAGAGCT-GA-ATATGGCCACAGACCTGTTTGAGA 1360
|| |||||||| ||||||||| |||| ||||| || | || | | |||||||||| ||
Sbjct 1402 CGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGAC-TG-CTGCTGACCTGTTTGTGA 1459
Query 1361 GAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTC-TTGGAGATGGATGAAG 1419
|||| || ||||||||||||||||| ||||||| ||||||| | ||||| ||||||||||
Sbjct 1460 GAAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGT-CGTTGGAAATGGATGAAG 1518
Query 1420 CCGCCACCTGCTAGTAAAAAGTCAGTGAATGT-TTTGGATCCTGAGGAGAGGAAAACTTT 1478
| || |||| | || | ||| |||| ||||||||||||||||||||| |
Sbjct 1519 TCTCCTCCTG-T--TA----G-CAG--AATGGCTTTGGATCCTGAGGAGAGGAAGA---- 1564
Query 1479 GAGGAAAGCCATAA-AGGCAGCACACTCGAATACCATGAGGGCAAAACTTCTGAAAGAAT 1537
|| || ||| || |||| | ||||| |||| ||| | ||||||||||||||
Sbjct 1565 -AG-AA-----TAAGAG--AGCAAAA---AATACTATGAAGGCCAGACTTCTGAAAGAAT 1612
Query 1538 TTAAGT-GCCAGATCTGTCGGCAAGTGCTGACTCTTCCAGTGACAACGCCGTGTGCTCAT 1596
||| || |||| ||||||||| ||||||||| |||||||||||| ||||| ||||| ||
Sbjct 1613 TTA-GTTGCCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACAC 1671
Query 1597 AACTTCTGCAAGGCATGCTTAGAAGCCAAATTTGCTGGGAAAACGCTAGTGAGGGAGAGA 1656
||||||||||| |||||||||||||| || |||||||||| ||| | | |||| ||||||
Sbjct 1672 AACTTCTGCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGA 1731
Query 1657 AGCAGA-GGTGGACG-AACTCTACGAGCACAGAAGAATGTGATGAACTGCCCTT-CTTGC 1713
|||| | || ||||| || ||||| ||| ||||||| | |||| |||||||| || ||
Sbjct 1732 AGCA-ATGGCGGACGTAAA-CTACGTGCAAAGAAGAACATCATGACCTGCCCTTGCT-GC 1788
Query 1714 CCCACTGA-CATTTCCGATTTTCTCCAGAACCCTCAGGTCAATAGAGA-AGTCATGGAGG 1771
| || || | | ||||| |||||||| ||||| ||||| || ||||| | | ||||||
Sbjct 1789 ACGACGGATC-TCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGA-TGATGGAGA 1846
Query 1772 TCATAGAGAGGTTGAAGAA 1790
| ||||||| || |||||
Sbjct 1847 TAATAGAGAATTTTAAGAA 1865
> AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24583820-24586681 REVERSE
LENGTH=1869
Length=1869
Score = 898 bits (486), Expect = 0.0
Identities = 1113/1404 (79%), Gaps = 89/1404 (6%)
Strand=Plus/Plus
Query 427 TGTTCT-TTCTGTATGCAATTGCCTGAGAGACCTGTGACGAAACCATGTGGGCACAACGC 485
|||||| || || || |||||||| ||||||||||| |||| ||| |||||||||||
Sbjct 385 TGTTCTATT-TGCATTCAATTGCCAGAGAGACCTGTCACGACACCGTGTGGGCACAA-TT 442
Query 486 T-TGCTTGAAATGTTTTGAGAAGT-GG-A-TGGGGC-AGGGCAAGCGAACTTGTGGT-AA 539
| || ||||||||||| ||||| | || | | || | |||| |||| ||||||| | |
Sbjct 443 TCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGG-AAGCTAACTTGT-ATGAT 500
Query 540 ATGCCGAAGCGTAATTCCGGAGA-AAATGGCTAAGAATCCCCGTATCAAC-TCGTCCCTT 597
|||||||||| |||||| |||| | |||| || ||||| || |||||| | | | ||
Sbjct 501 ATGCCGAAGCAAAATTCC-GAGACATGTGGCGAAAAATCCTCGCATCAACTTAG-CTCTA 558
Query 598 GTGTCTGCTATTAGATTAGCGAAA-G-TATCTAAAAGTGCTGCTGCGGGTACT---TCAA 652
|| ||||||||| | ||||| ||| | || | ||| || ||| || || ||| | |
Sbjct 559 GTTTCTGCTATTCGTTTAGC-AAATGTTA-CCAAATGTTCTGGTGAGGCAACTGCGGCCA 616
Query 653 AGG-TCTTTCAT-TTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGCG 710
||| || |||| || || |||| |||||||| || || ||||||||||| || |||||
Sbjct 617 AGGTTC-ATCATATT-ATCCGCAACCAAGACCGTCCTGACAAAGCATTTACTACCGAGCG 674
Query 711 TGCA-AAGAAAACTGGGAAGGCGAACGCTGCTAGTGG-AAGGATTTATGTTACAATACCA 768
||| | ||||||||||| || || |||||||| || || | ||| ||| ||||||||
Sbjct 675 GGCAGTA-AAAACTGGGAAAGCTAATGCTGCTAGCGGTAA-GTTTTTTGTGACAATACCT 732
Query 769 CCAGATCACTTTGGTCCTATACCAGCTGAAAACGATCCTGTC-AGGAACCAAGGTCTTTT 827
| ||||| |||||||| |||||||||| || ||| | | || ||||||||| ||||
Sbjct 733 CGTGATCATTTTGGTCCCATACCAGCTGCGAATGAT-GTCACTAGAAACCAAGGTGTTTT 791
Query 828 GGTTGGAGAATCCTGGGAAGACAGACTCGAGTGTAGGCAGTGGGGGGCTCACTTCCCACA 887
|||||||||||| ||||| ||||| | ||||||||||||||||| | ||| ||||| ||
Sbjct 792 GGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGTTCATTTCCCGCA 851
Query 888 TGTTGCTGGCATTGCTGGACAATCA-AATTATGGAGCTCAATCTGTAGCACTCTCTGGAG 946
||||||||||||||| || ||| || | ||||||||| ||||| || ||||||||||
Sbjct 852 TGTTGCTGGCATTGCCGGGCAAGCAGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAG 910
Query 947 GTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAG 1006
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 911 GTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGG 970
Query 1007 ATCTCAGTGGCAACAAAAGGA-CTAATAAGGA-GCAGTCCTT-TGATCAAAAATTTGAAA 1063
|||||||||| ||||||| || ||| || || |||| ||| ||| || ||| |||
Sbjct 971 ATCTCAGTGGAAACAAAA-GAGTTAACAA-GATACAGT-CTTCTGACCAGGCGTTT-AAA 1026
Query 1064 AGTC-T-AATGAAGCCT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCA 1120
| | | ||||||| || |||||||||| |||||| |||| |||||||| |||||||| |
Sbjct 1027 A-ACATGAATGAAG-CTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAA 1084
Query 1121 GGTCTCACAAGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGG 1180
||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 1085 GGTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCGGAAGGAGTGAGATACGATGGGG 1144
Query 1181 TGTACCGGATCGAGAAGTGCTGGCGGAAAGTTGGTATACAGGGTTCTTTCA-AGG-TCTG 1238
| ||| | || || ||||||||| | || ||||| ||||||||| | || | | | ||
Sbjct 1145 TCTACAGAATTGAAAAGTGCTGGAGTAATGTTGGCGTACAGGGTT-TG-CATAAGATGTG 1202
Query 1239 TCGTTACCTGTTTGTTAGATGTGATAATGAGCCAGCTCCATGGACTAGTGATGAGCATGG 1298
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1203 TCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGG 1262
Query 1299 AGATCGCCCAAGACCTTTGCCTAATATTCCAGAGCTGAATA-TGGCCACAGACCTGTTTG 1357
||||| ||||||||||||||| || ||||||||||| | | || | || ||||||||||
Sbjct 1263 CGATCGTCCAAGACCTTTGCCTGATGTTCCAGAGCTGGAGAATG-CTACTGACCTGTTTG 1321
Query 1358 AGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTC-TTGGA-GATGGAT 1415
|||||| || ||||||||||||| ||| ||||||| ||||||| | ||||| | |||||
Sbjct 1322 TGAGAAAGGAGAGTCCATCATGGGGTTTCGATGAAGCTGAGGGT-CGTTGGAAG-TGGAT 1379
Query 1416 GAAGCCGCCACCTGCTAGTAAAAAGTCAGTGAATGT-TTTGGATCCTGAGGAGAGGAA-A 1473
|||| | ||||||| | || | ||| |||| ||||||| ||||||||||||| |
Sbjct 1380 GAAGTCTCCACCTG-T--TA----G-CAG--AATGGCTTTGGATACTGAGGAGAGGAAGA 1429
Query 1474 ACTTTGAGGAAAGCCATAAA-GGCAGCACACTCGAATACCATGAGGGCAAAACTTCTGAA 1532
| | || | ||| | ||| || | | | | ||| | |||| ||| | |||||||||
Sbjct 1430 AGAATAAG-AGAGCAAAAAAAGG-A--A-A-T--AATGCTATGAAGGCCAGACTTCTGAA 1481
Query 1533 AGAATTTAAGT-GCCAGATCTGTCGGCAAGTGCTGACTCTTCCAGTGACAACGCCGTGTG 1591
|||||| | || |||| ||||||||| ||||||||| |||||||||||| || || ||||
Sbjct 1482 AGAATTCA-GTTGCCAAATCTGTCGGAAAGTGCTGAGTCTTCCAGTGACGACACCTTGTG 1540
Query 1592 CTCATAACTTCTGCAAGGCATGCTTAGAAGCCAAATTTGCTGGGAAAACGCTAGTGAGGG 1651
| || ||||||||||| |||||||||||||| || |||||||||| ||| | | |||| |
Sbjct 1541 CACACAACTTCTGCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAG 1600
Query 1652 AGAGAAGCAGA-GGTG-GACG-AACTCTACGAGCACAGAAGAATGTGATGAACTGCCCTT 1708
| ||||||| | || | | || || ||||| ||| |||| || | |||| ||||||||
Sbjct 1601 ACAGAAGCA-ATGGCGTG-CGTAAA-CTACGTGCAAAGAAAAACATCATGACCTGCCCTT 1657
Query 1709 -CTTGCCCCACTGA-CATTTCCGATTTTCTCCAGAACCCTCAGGTCAATAGAGAAGTCAT 1766
|| || | || || | | ||||| |||||||| ||||| ||||| || |||||| | ||
Sbjct 1658 GCT-GCACAACCGATC-TCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAAATGAT 1715
Query 1767 GGAGGTCATAGAGAGGTTGAAGAA 1790
|||| | ||||||| || |||||
Sbjct 1716 GGAGATAATAGAGAATTTTAAGAA 1739
> AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24589487-24592747 FORWARD
LENGTH=2050
Length=2050
Score = 893 bits (483), Expect = 0.0
Identities = 1113/1405 (79%), Gaps = 91/1405 (6%)
Strand=Plus/Plus
Query 427 TGTTCT-TTCTGTATGCAATTGCCTGAGAGACCTGTGACGAAACCATGTGGGCACAACGC 485
|||||| || || || |||||||| ||||||||||| |||| ||| |||||||||||
Sbjct 432 TGTTCTATT-TGCATTCAATTGCCAGAGAGACCTGTTACGACACCGTGTGGGCACAA-TT 489
Query 486 T-TGCTTGAAATGTTTTGAGAAGT-GG-A-TGGGGC-AGGGCAAGCGAACTTGTGGT-AA 539
| || ||||||||||| ||||| | || | | || | |||| |||| ||||||| | |
Sbjct 490 TCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGG-AAGCTAACTTGT-ATGAT 547
Query 540 ATGCCGAAGCGTAATTCCGGAGA-AAATGGCTAAGAATCCCCGTATCAAC-TCGTCCCTT 597
|||||||||| |||||| |||| | |||| || ||||| || |||||| | | | ||
Sbjct 548 ATGCCGAAGCAAAATTCC-GAGACATGTGGCGAAAAATCCTCGCATCAACTTAG-CTCTA 605
Query 598 GTGTCTGCTATTAGATTAGCGAAA-G-TATCTAAAAGTGCTGCTGCGGGTACT---TCAA 652
|| ||||||||| | ||||| ||| | || | ||| || ||| || || ||| | |
Sbjct 606 GTTTCTGCTATTCGTTTAGC-AAATGTTA-CCAAATGTTCTGGTGAGGCAACTGCGGCCA 663
Query 653 AGG-TCTTTCAT-TTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGCG 710
||| || |||| || || |||| |||||||| || || ||||||||||| || |||||
Sbjct 664 AGGTTC-ATCATATT-ATCCGCAACCAAGACCGTCCTGACAAAGCATTTACTACCGAGCG 721
Query 711 TGCA-AAGAAAACTGGGAAGGCGAACGCTGCTAGTGG-AAGGATTTATGTTACAATACCA 768
||| | ||||||||||| || || |||||||| || || | ||| ||| ||||||||
Sbjct 722 GGCAGTA-AAAACTGGGAAAGCTAATGCTGCTAGCGGTAA-GTTTTTTGTGACAATACCT 779
Query 769 CCAGATCACTTTGGTCCTATACCAGCTGAAAACGATCCTGTC-AGGAACCAAGGTCTTTT 827
| ||||| |||||||| |||||||||| || ||| | | || ||||||||| ||||
Sbjct 780 CGTGATCATTTTGGTCCCATACCAGCTGCGAATGAT-GTCACTAGAAACCAAGGTGTTTT 838
Query 828 GGTTGGAGAATCCTGGGAAGACAGACTCGAGTGTAGGCAGTGGGGGGCTCACTTCCCACA 887
|||||||||||| ||||| ||||| | ||||||||||||||||| | ||| ||||| ||
Sbjct 839 GGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGTTCATTTCCCGCA 898
Query 888 TGTTGCTGGCATTGCTGGACAATCA-AATTATGGAGCTCAATCTGTAGCACTCTCTGGAG 946
||||||||||||||| || ||| || | ||||||||| ||||| || ||||||||||
Sbjct 899 TGTTGCTGGCATTGCCGGGCAAGCAGCGGT-TGGAGCTCAGTCTGTGGCCCTCTCTGGAG 957
Query 947 GTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAG 1006
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 958 GTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGG 1017
Query 1007 ATCTCAGTGGCAACAAAAGGA-CTAATAAGGA-GCAGTCCTT-TGATCAAAAATTTGAAA 1063
|||||||||| ||||||| || ||| || || |||| ||| ||| || ||| |||
Sbjct 1018 ATCTCAGTGGAAACAAAA-GAGTTAACAA-GATACAGT-CTTCTGACCAGGCGTTT-AAA 1073
Query 1064 AGTC-T-AATGAAGCCT-TAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCA 1120
| | | ||||||| || |||||||||| |||||| |||| |||||||| |||||||| |
Sbjct 1074 A-ACATGAATGAAG-CTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAA 1131
Query 1121 GGTCTCACAAGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGG 1180
||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 1132 GGTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCGGAAGGAGTGAGATACGATGGGG 1191
Query 1181 TGTACCGGATCGAGAAGTGCTGGCGGAAAGTTGGTATACAGGGTTCTTTCA-AGG-TCTG 1238
| ||| | || || ||||||||| | || ||||| ||||||||| | || | | | ||
Sbjct 1192 TCTACAGAATTGAAAAGTGCTGGAGTAATGTTGGCGTACAGGGTT-TG-CATAAGATGTG 1249
Query 1239 TCGTTACCTGTTTGTTAGATGTGATAATGAGCCAGCTCCATGGACTAGTGATGAGCATGG 1298
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1250 TCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGG 1309
Query 1299 AGATCGCCCAAGACCTTTGCCTAATATTCCAGAGCTGAATA-TGGCCACAGACCTGTTTG 1357
||||| ||||||||||||||| || ||||||||||| | | || | || ||||||||||
Sbjct 1310 CGATCGTCCAAGACCTTTGCCTGATGTTCCAGAGCTGGAGAATG-CTACTGACCTGTTTG 1368
Query 1358 AGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTC-TTGGA-GATGGAT 1415
|||||| || ||||||||||||| ||| ||||||| ||||||| | ||||| | |||||
Sbjct 1369 TGAGAAAGGAGAGTCCATCATGGGGTTTCGATGAAGCTGAGGGT-CGTTGGAAG-TGGAT 1426
Query 1416 GAAGCCGCCACCTGCTAGTAAAAAGTCAGTGAATGT-TTTGGATCCTGAGGAGAGGAA-A 1473
|||| | ||||||| | || | ||| |||| ||||||| ||||||||||||| |
Sbjct 1427 GAAGTCTCCACCTG-T--TA----G-CAG--AATGGCTTTGGATACTGAGGAGAGGAAGA 1476
Query 1474 ACTTTGAGGAAAGCCATAAA-GGCAGCACACTCGAATACCATGAGGGCAAAACTTCTGAA 1532
| | || | ||| | ||| || | | | | ||| | |||| ||| | |||||||||
Sbjct 1477 AGAATAAG-AGAGCAAAAAAAGG-A--A-A-T--AATGCTATGAAGGCCAGACTTCTGAA 1528
Query 1533 AGAATTTAAGT-GCCAGATCTGTCGGCAAGTGCTGACTCTTCCAGTGACAACGCCGTGTG 1591
|||||| | || |||| ||||||||| ||||||||| |||||||||||| || || ||||
Sbjct 1529 AGAATTCA-GTTGCCAAATCTGTCGGAAAGTGCTGAGTCTTCCAGTGACGACACCTTGTG 1587
Query 1592 CTCATAACTTCTGCAAGGCATGCTTAGAAGCCAAATTTGCTGGGAAAACGCTAGTGAGGG 1651
| || ||||||||||| |||||||||||||| || |||||||||| ||| | | |||| |
Sbjct 1588 CACACAACTTCTGCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAG 1647
Query 1652 AGAGAAGCAGA-GGTG-GACG-AACTCTACGAGCACAGAAGAATGTGATGAACTGCCCTT 1708
| ||||||| | || | | || || ||||| ||| |||| || | |||| ||||||||
Sbjct 1648 ACAGAAGCA-ATGGCGTG-CGTAAA-CTACGTGCAAAGAAAAACATCATGACCTGCCCTT 1704
Query 1709 -CTTGCCCCACTGA-CATTTCCGATTTTCTCCAGAACCCTCAGGTCAATAGAGA-AGTCA 1765
|| || | || || | | ||||| |||||||| ||||| ||||| || ||||| | | |
Sbjct 1705 GCT-GCACAACCGATC-TCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGA-TGA 1761
Query 1766 TGGAGGTCATAGAGAGGTTGAAGAA 1790
||||| | ||||||| || |||||
Sbjct 1762 TGGAGATAATAGAGAATTTTAAGAA 1786
> AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:5463885-5466671
REVERSE LENGTH=1634
Length=1634
Score = 713 bits (386), Expect = 0.0
Identities = 826/1029 (80%), Gaps = 67/1029 (7%)
Strand=Plus/Plus
Query 419 ACTTG-ATGTGTTCTTTCTGT-ATGCAATTGCCTGAGAGACCTGTGACGAAACCATGTGG 476
||||| || |||||| | ||| || ||||||||||| || || || |||| | ||||||
Sbjct 353 ACTTGAAT-TGTTCTCTGTGTAAT-CAATTGCCTGATAGGCCCGTCACGATATTATGTGG 410
Query 477 GCACAACGCTTGCTTGAAATGTTTTGAGAAGTGGATGGGGC-AGGGCAAGCGAACTTGTG 535
|| ||| |||||||||||||||||| |||||||| | | |||| || | || |||||
Sbjct 411 ACATAACTTTTGCTTGAAATGTTTTGACAAGTGGATTGATCAAGGG-AATCAAATTTGTG 469
Query 536 GTAAATGCCGAAGCGTAATTCCGGAGAAAATGGCTAAGAATCCCCGTATCAACTCGTCCC 595
|| ||| || ||| |||||| || ||||||||| ||||| ||| | |||||||| |
Sbjct 470 CTACATGTCGTAGCACAATTCCTGACAAAATGGCTGCCAATCCTCGTGTTAACTCGTCTC 529
Query 596 TTGTGTCTGCTATTAGATTA-GCGAAAGTAT-CTAAAAGTGCTGCTGCGGGTACTTCAAA 653
||||||||| ||| | ||| | ||||| | |||||| ||||| || |||||| ||||
Sbjct 530 TTGTGTCTGTTATCCG-TTATGTAAAAGT-TGCTAAAACTGCTGGTGTTGGTACTGCAAA 587
Query 654 GGTCTTTCATTTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGCGTGC 713
| |||| ||| | |||||| |||||| | ||||| || || |||| ||| |||| ||
Sbjct 588 TTTTTTTCCTTTTACAAGCAACCAAGACGGCCCAGAGAATGCCTTTAGAACCAAGCGCGC 647
Query 714 AAAGAAAACTGGGAAGGCGAACGCTGCTAGTGGAAGGATTTATGTTACAATACCACCAGA 773
| ||| | ||| ||| ||| ||| || |||||| |||||||| ||||| ||
Sbjct 648 -TA-AAATC-GGGGAGGAGAA---TGC---TGCAAGGATATATGTTACCGTACCATTTGA 698
Query 774 TCACTTTGGTCCTATACCAGCTGAAAACGATCCTGTCAGGAACCAAGGTCTTTTGGTTGG 833
||||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||
Sbjct 699 TCACTTTGGTCCTATACCAGCTGAACATGATCCTGTCAGGAACCAAGGTGTTTTAGTTGG 758
Query 834 AGAATCCTGGGAAG-A-CAGACTCGAGTGTAGGCAGTGGGGGGCTCACTTCCCACATGTT 891
||||||||||| || | | || | |||||| |||||||||||| |||||| |||||||||
Sbjct 759 AGAATCCTGGG-AGAATC-GAGTAGAGTGTCGGCAGTGGGGGGTTCACTTGCCACATGTT 816
Query 892 GCTGGCATTGCTGGACAATCAA-ATTATGGAGCTCAATCTGTAGCACTCTCTGGAGGTTA 950
|| |||||||||||||| || | ||||||||||| ||||||| | | |||||||||||
Sbjct 817 TCTTGCATTGCTGGACAA-GAAGACTATGGAGCTCAGTCTGTAGTAATATCTGGAGGTTA 875
Query 951 TGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATCT 1010
| ||||||| ||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 876 TAAGGATGACGAGGATCATGGAGAATGGTTTCTATACACAGGAAG-GAGT-A-GAGGG-- 930
Query 1011 CAGTGGCAACAAAAGGACTAATAAGGAGCAGTCCTTTGATCAAAAATTTGAA--AAG-TC 1067
|| | || | |||| |||| ||| ||||| | | || ||| ||| |
Sbjct 931 -AG----A-CATTTCG-CTAACGAGGATCAGGAGTTTGA--AGAC-TT-GAATGAAGCTT 979
Query 1068 TAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTCA 1127
||| || | ||| | || || | ||| |||||||||| |||||||||||||||||| |
Sbjct 980 TAA-GA-G--TTA-G--TT-GC-G-AAA-TGGGGTATCCAGTTCGAGTTGTCAGGTCTTA 1028
Query 1128 CAAGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGGTGTACCG 1187
|||||| | | |||||||||||||||| |||| ||||||||||||||||| || ||| |
Sbjct 1029 CAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTGAGATATGATGGTGTATACAG 1088
Query 1188 GATCGAGAAGTGCTGGCGGAAAGTTGGTATACAGGG-TTC-TTTCAAGGTCTGTCGTTAC 1245
||||||||| |||||||| |||| | | || | || ||| ||| |||||||||||||||
Sbjct 1089 GATCGAGAAATGCTGGCGAAAAGCTAG-ATTCCCGGATTCATTT-AAGGTCTGTCGTTAC 1146
Query 1246 CTGTTTGTTAGATGTGATAATGAGCCAGCTCCATGGA-CTAGTGATGAGCA-TGGAGATC 1303
|||||||| |||||||| ||||||||||||||||||| | ||||||||| | ||||||||
Sbjct 1147 CTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAAC-AGTGATGAG-AGTGGAGATC 1204
Query 1304 GCCCAAGACCTTTGCCTAATATTCCAGAGCT-GAATATGGCCACAGACCTGTTTGAGAGA 1362
| ||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||
Sbjct 1205 GTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAA-ACGGCCTCAGACCTGTTTGAGAGA 1263
Query 1363 AAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTC-TTGGAGATGGATGAAGCC 1421
|| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1264 AAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGC-CGTTGGAGATGGATGAAGCC 1322
Query 1422 GCCACCTGC 1430
||||||||
Sbjct 1323 TCCACCTGC 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96585848580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5