BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315468
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65040.2 | Symbols: | RING/U-box superfamily protein | chr1... 1397 0.0
AT3G16090.1 | Symbols: | RING/U-box superfamily protein | chr3... 490 2e-137
> AT1G65040.2 | Symbols: | RING/U-box superfamily protein | chr1:24159834-24163628
REVERSE LENGTH=1790
Length=1790
Score = 1397 bits (756), Expect = 0.0
Identities = 822/854 (96%), Gaps = 4/854 (0%)
Strand=Plus/Plus
Query 615 GTATATGATTCTGGCAACAACAACTGTTTCTATTATTGTAAAGTATGCCTTCTATGTCAC 674
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 670 GTATATGATTCTGGCAACAACAACTGTTTCTATTATTGTGAAGTATGCCTTCTATGTCAC 729
Query 675 TGATATACTCAAGGAAGGTCAATGGGAAGGGAAACCGGTATACACTTTCTATCTGGAGCT 734
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 730 TGATATGCTCAAGGAAGGTCAATGGGAAGGAAAACCAGTATACACTTTCTATCTGGAGCT 789
Query 735 TGTTCGTGACTTGCTTCACTTGTCCATGTATCTTTGCTTCTTCCTTATGATATTCATGAA 794
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 790 TGTTCGTGACTTGCTTCACTTGTCCATGTATCTTTGCTTCTTCCTGATGATATTCATGAA 849
Query 795 CTATGGCCTTCCCTTGCATCTAATACGGGAGCTCTACGAAACGTTCAGAAACTTCAAGAT 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CTATGGCCTTCCCTTGCATCTAATACGGGAGCTCTACGAAACGTTCAGAAACTTCAAGAT 909
Query 855 TCGTGTGACTGATTACCT-CAGATATCGTAAAATCACTTCCAATATGAATGAACGGTTTC 913
|||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||
Sbjct 910 TCGTGTGACTGATTACCTTC-GATATCGGAAAATCACTTCCAATATGAATGATCGGTTTC 968
Query 914 CTGATGCAACTCCTGAAGAACTTAGTGCAAATGATGCCACTTGTATCATATGTCGTGAAG 973
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 969 CTGATGCAACTCCTGAAGAACTTAGTTCAAATGATGCCACTTGTATCATATGTCGTGAAG 1028
Query 974 AAATGACCTCAGCGAAGAAATTAGTATGTGGCCATCTATTTCATGTGCATTGTCTGCGGT 1033
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1029 AAATGACCTCAGCGAAGAAATTAGTATGTGGCCATCTATTTCATGTACATTGTCTTCGGT 1088
Query 1034 CATGGTTGGAACGACAGAACACATGTCCCACCTGCAGAGCACTGGTTGTCCCAGCTGAAA 1093
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1089 CATGGTTGGAACGACAGAACACATGTCCCACTTGCAGAGCACTGGTTGTCCCAGCTGAGA 1148
Query 1094 ATGCTACATCAACAGCTTCTGGAAACCGTGGACCACACCAAGAATCCCTGCAGCAAGGAA 1153
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1149 ATGCTACATCAACAGCTTCTGGAAACCGTGGGCCACACCAAGAATCCCTGCAGCAAGGAA 1208
Query 1154 TCGGTACTTCAAGTTCTAATGGTCAGGGTTCTTCTGTTTCTGCTGCTCCCAGTGAGAATA 1213
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1209 CCGGTACTTCAAGTTCTGATGGTCAGGGTTCTTCTGTTTCTGCTGCTGCCAGTGAGAATA 1268
Query 1214 TGAGCAGGCACGAGGCTAGGTTTCAAGCTGCTGCTTCTGCAGCCTCTATATATGGGAGAT 1273
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1269 TGAGCAGGCACGAGGCTAGGTTTCAAGCCGCTGCTTCTGCAGCCTCTATATATGGGAGAT 1328
Query 1274 CCGTTGTTTATCCATCTTCTGCAAACACACTAGTATGGTCTCAAGGTTATTCATTGCTTC 1333
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1329 CCATTGTTTATCCATCTTCTGCAAACACACTAGTATGGTCTCAAGGTAATTCATTACTTC 1388
Query 1334 CTCAGACGGAGTTAGAAGCTCAAAGAAGATTTCTTGAGTCCCAAATCGAGGTGTTA-CAA 1392
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1389 CTCAGACGGAGGTAGAAGCTCAAAGAAGATTTCTTGAGTCCCAAATCGAGGTGTTAACGA 1448
Query 1393 AACCAACTTCGGCTTCTGGAGAAGCCGGCAACTGTAGATACGAAAGGAAAGTCAGTTGCG 1452
| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 1449 A-CCAACTTCGGCTTTTGGAGAAACCGACAACTGTAGATACGAAAGGAAAGTCCGTTGCG 1507
Query 1453 GAAACTGCAGAGTG 1466
|| |||||| ||||
Sbjct 1508 GATACTGCATAGTG 1521
Score = 798 bits (432), Expect = 0.0
Identities = 502/536 (94%), Gaps = 4/536 (1%)
Strand=Plus/Plus
Query 1 ATGATTCAGCTAAGGGTTTACGCTGGTCTAAGTACTCTTGCGGCATTGGTTGTGATTTAT 60
||||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||| |||
Sbjct 137 ATGATTCAGCTAAAGGTTTACGCGGGTCTGAGTACTCTCGCGACATTGGTTGTGATATAT 196
Query 61 CATGCTTTTAGTAGCAGAGGTCAATTTTACCCAGCGACTGTGTATCTATCAACGTCCAAG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 197 CATGCTTTTAGTAGCAGAGGTCAATTTTACCCAGCGACTGTGTATCTATCAACGTCTAAG 256
Query 121 ATCAATTTGGTGGTTCTTTTGAACATGGGTTTGGTCTTAATGCTCAGTTTATGGAATCTT 180
||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 257 ATCAATTTGGTAGTTCTTTTGAACATGGGTTTGGTATTAATGTTGAGTTTATGGAATCTT 316
Query 181 GTCAAAATTGTGTTTCTGGGTTCTCTTAGAGAAGCTGAAGTTGAGCGTTTGAATGAGCAA 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GTCAAAATTGTGTTTTTGGGTTCTCTTAGAGAAGCTGAAGTTGAGCGTTTGAATGAGCAA 376
Query 241 GCTTGGAGAGAACTCATGGAGATTCTCTTTGCTATTACTATTTTTAGACAGGACTTCTCT 300
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 377 GCTTGGAGAGAACTGATGGAGATTCTCTTTGCTATTACTATTTTTAGACAAGATTTCTCT 436
Query 301 GTTGGTTTTATCTCTTTGGTTGTGACTCTTTTGTTGATCAAGGGTTTGCATTGGATGGCT 360
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 437 GTTGGGTTTATCTCTTTGGTTGTGACTCTTTTGTTGATTAAGGGTTTGCATTGGATGGCT 496
Query 361 CAGAAGAGAGTGGAGTATATTGAGACTACTCCTTCTGTGACTTTGCTCTCTCATGTTCGT 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 497 CAAAAGAGAGTGGAGTATATTGAGACTACTCCTTCTGTGACTTTGCTCTCTCATGTCCGT 556
Query 421 ATTGTTTCGTTTCTGGTGTTTCTT--TTGCTCTTAGATGGTCTTCTTACGTATAGTTCTA 478
|| ||||| ||| |||| |||| | || |||||||| |||| ||||||||||||||||
Sbjct 557 ATAGTTTCTTTTATGGT-TTTCCTCCTTA-TCTTAGATTGTCTCCTTACGTATAGTTCTA 614
Query 479 TACGGCAATTGATTCAGTCCCGGAAGGCTTCAATGTCAGTCTTCTTCACGTTTGAG 534
||| ||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 615 TACAGCAATTGATTCAGTCACGTAAAGCTTCAATGTCAGTCTTCTTCACGTTTGAG 670
> AT3G16090.1 | Symbols: | RING/U-box superfamily protein | chr3:5456144-5458966
FORWARD LENGTH=2120
Length=2120
Score = 490 bits (265), Expect = 2e-137
Identities = 574/718 (80%), Gaps = 41/718 (6%)
Strand=Plus/Plus
Query 615 GTATATGATTCTGGCAACAACAACTGTTTCTATTATTGTAAAGTATGCCTTCTATGTCAC 674
||||||||| ||||| ||||| |||||| ||||| |||| ||||||| |||||||||||
Sbjct 903 GTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGTTTTCTATGTCAC 962
Query 675 TGATATACTCAA-GGAAGGTCAATGGGAAG-GGAAACCGGTATACACTTTCTATCTGGAG 732
|||||| | || ||| |||||||||| || ||| || || || ||||||||||| |||
Sbjct 963 TGATAT-GTTAATGGATGGTCAATGGG-AGAAGAAGCCAGTTTATACTTTCTATCTTGAG 1020
Query 733 CTTGTTCGTGACTTGCTTCACTTGTCCATGTATCTTTGCTTCTTCCTTATGATATTCATG 792
||| | |||||| |||||||||||||||||||| | ||||||||| || | |||||||||
Sbjct 1021 CTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGTCATATTCATG 1080
Query 793 AACTATGGCCTTCCCTTGCATCTAATACGGGAGCTCTACGAAACGTTCAGAAACTTCAAG 852
||||||||| | || |||||| | ||||||||||||||||||| |||||||||||| ||
Sbjct 1081 AACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAGAAACTTCCAG 1140
Query 853 ATTCGTGTGACTGATTACC-TCAGATATCGTAAAATCACTTCCAATATGAATGAAC-GGT 910
|||||||| | ||||||| || | |||||||| ||||| ||||||||||| | || |||
Sbjct 1141 ATTCGTGTTTCCGATTACCTTC-GTTATCGTAAGATCACGTCCAATATGAACG-ACAGGT 1198
Query 911 TTCCTGATGCAACTCCTGAAGAACTTAGTGCAAATGATGCCACTTGTATCATATGTCGTG 970
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||
Sbjct 1199 TTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCATATGCCGTG 1258
Query 971 AAGAAATGACCTCA-GCGAAGAAATTAGTATGTGGCCATCTATTTCATGTGCATTGTCTG 1029
|||| ||||| | ||||||||| || |||| || ||||| |||||||||||||||||
Sbjct 1259 AAGAGATGACAA-ATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCATTGTCTA 1317
Query 1030 CGGTCATGGTTGGA-ACGACAGAACACATGTCCCACCTGCAGAGCACTGGTTGTCCCAGC 1088
|| ||||||||||| | ||||| | |||||||| || ||||||||||| ||||| || |
Sbjct 1318 CGATCATGGTTGGAGA-GACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGTACCTCC 1376
Query 1089 TGAAAATGCTACATCAACAGCTTCTGGA-AACCGTGGACCACACCAAGAATCCCTGCAGC 1147
||| ||||| || || ||||| | || ||| ||| | |||||||| |||| | |
Sbjct 1377 TGAGAATGCCACCTCTGCAGCTCCAGGCCAAC-GTGAATTACACCAAGGTTCCCA--A-C 1432
Query 1148 AAGGAATCGGTACTTCAAGTTCTAATGGT--C-AGGGTTCTTC--T--GTT-T-CTGCTG 1198
| || | ||| ||||| || | ||| | |||| ||| | ||| | | ||||
Sbjct 1433 A-GG----G-TACATCAAGCTC-A--GGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTG 1483
Query 1199 -C-TC-CCAGTGAGAATATGAGCAGGCACGAGGCTAGGTTTCAAGCTGCTGCTTCTGCAG 1255
| | ||| | | | | ||||||||||| | || ||| ||||||| |||||||||||||
Sbjct 1484 GCGTTTCCAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAG 1543
Query 1256 CCTCTATATATGGGAGATCCGTTGTTTATCCATCTTCTGCAAACACACTAGTATGGTC 1313
|||| | ||||||| ||| | ||||| |||||| ||||||||| ||| ||||||
Sbjct 1544 CCTCCGTGTATGGGAAATCAATGGTTTACCCATCT---GCAAACACAGTAGCATGGTC 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5