BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315469
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65060.1 | Symbols: 4CL3 | 4-coumarate:CoA ligase 3 | chr1:2... 2737 0.0
> AT1G65060.1 | Symbols: 4CL3 | 4-coumarate:CoA ligase 3 | chr1:24167202-24171502
REVERSE LENGTH=1914
Length=1914
Score = 2737 bits (1482), Expect = 0.0
Identities = 1634/1705 (96%), Gaps = 20/1705 (1%)
Strand=Plus/Plus
Query 1 ATGATAACTGCAGCTCTACACGAACCTCAGATTCACAAACCAACCGATACATCCGTCGTC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ATGATCACTGCAGCTCTACACGAACCTCAGATTCACAAACCAACCGATACATCCGTCGTC 105
Query 61 TCCGGCGATATGCTtcctcctcctcctcctccacctcctATGCCTCGCATTTTCCGGTCA 120
|||| ||| ||| | ||||| | | || ||||||| |||||||||||||||||||
Sbjct 106 TCCGATGATGTGC-T--TCCTCAT--T-CT---CCTCCTACGCCTCGCATTTTCCGGTCA 156
Query 121 AAGCTTCCGGACATTGACATCCCTAACCACCTACCTCTCCACACTTACTGCTTCGAAAAA 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 157 AAGCTTCCGGACATTGACATCCCTAACCACCTCCCTCTCCACACTTACTGCTTCGAAAAA 216
Query 181 CTCTCATCTGTTTCCGACAAGCCTTGTCTCATTGTTGGCTCCACCGGAAAAAGCTATACC 240
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 217 CTCTCATCTGTTTCCGACAAGCCTTGTCTCATCGTTGGCTCCACCGGGAAAAGCTACACC 276
Query 241 TACAGCGAAACACACCTAATCTGCCGGAGAGTCGCTTCCGGATTATACAAGTTAGGTATC 300
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 277 TACGGCGAAACACACCTAATCTGTCGGAGAGTCGCTTCCGGGTTATACAAGTTAGGTATC 336
Query 301 AGAAAAGGTGACGTCATCATGATCCTTCTCCAAAACTCAGCCGAGTTCGTCTTCTCCTTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 337 AGAAAAGGTGACGTCATCATGATCCTTCTCCAAAACTCAGCCGAGTTCGTTTTCTCCTTC 396
Query 361 ATGGGTGCTTCCATGATCGGAGCCGTCTCAACCACCGCAAACCCTTTCTACACTTGTCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 397 ATGGGTGCTTCCATGATCGGAGCCGTCTCAACCACCGCAAACCCTTTCTACACTTCTCAA 456
Query 421 GAGATTTATAAACAGCTTAAATCTTCCGGAGCTAAACTCATAATCACTCACTCTCAATAC 480
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 457 GAGCTTTATAAACAGCTTAAATCTTCCGGAGCCAAACTCATAATCACTCACTCTCAATAC 516
Query 481 GTCGATAAACTTAAAAACCTCGGAGAAAACCTCACGGTGATCACCACCGATGAACCAACA 540
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 517 GTCGATAAACTTAAAAACCTCGGAGAAAACCTCACGCTGATCACTACCGATGAACCAACA 576
Query 541 CCGGAGAATTGTCTACCATTCTCAACACTCATCACCGACGACGAGACAAACCCATTTCAA 600
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 577 CCGGAGAATTGTCTACCATTCTCGACACTCATCACCGACGACGAAACAAACCCATTTCAA 636
Query 601 GAAACCGTAGATATTGGCGGTGACGATGCGGCGGCGCTT-CCATTCTCATCGGGAACAAC 659
|||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 637 GAAACCGTCGATATCGGCGGTGACGATGCGGCGGCG-TTACCATTCTCATCGGGAACAAC 695
Query 660 AGGGTTACCAAAAGGAGTTGTTTTGACACACAAGAGCTTAATCACAAGCGTTGCACAACA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AGGGTTACCAAAAGGAGTTGTTTTGACACACAAGAGCTTAATCACAAGCGTTGCACAACA 755
Query 720 AGTAGATGGAGATAACCCAAATCTTTACCTCAAATCAAACGACGTCCTACTCTGCGTTTT 779
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 756 AGTAGATGGAGATAACCCAAATCTTTACCTCAAATCAAACGACGTCATACTCTGCGTTTT 815
Query 780 ACCACTTTTCCATATCTACTCTCTTAATAGCGTCCTCCTCAATTCACTCCGATCCGGTGC 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 816 ACCACTTTTCCATATCTACTCTCTCAATAGCGTCCTCCTCAATTCACTCCGATCCGGCGC 875
Query 840 CACGGTTCTTTTAATGCATAAGTTTGAGATCGGTGCGCTATTGGATCTTATTCAAAGACA 899
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 876 CACGGTTCTTTTAATGCATAAGTTTGAGATCGGTGCGTTATTGGATCTTATTCAAAGACA 935
Query 900 TAGAGTGACAATAGCGGCGCTTGTACCGCCGCTAGTGATCGCTCTAGCTAAAAACCCGAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TAGAGTGACAATAGCGGCGCTTGTACCGCCGCTAGTGATCGCTCTAGCTAAAAACCCGAC 995
Query 960 TGTTAACTCTTATGATCTCTCCTCCGTTAGATTGGTTCTCTCCGGTGCAGCTCCTTTAGG 1019
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 996 GGTTAATTCTTATGATCTCTCCTCCGTTAGATTCGTTCTTTCCGGTGCAGCTCCTTTAGG 1055
Query 1020 TAAAGAACTTCAAGATAGTCTCCGTCGCCGTCTCCCTCAAGCCATCCTTGGCCAGGGATA 1079
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TAAAGAACTTCAAGATAGTCTTCGTCGCCGTCTCCCTCAAGCCATCCTTGGCCAGGGATA 1115
Query 1080 TGGTATGACGGAAGCAGGACCAGTGTTGTCAATGAGCCTTGGGTTCGCTAAAGAACCGAT 1139
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TGGTATGACGGAGGCAGGACCAGTGTTGTCAATGAGCCTTGGGTTCGCTAAAGAACCGAT 1175
Query 1140 GCCGACAAAATCAGGTTCATGTGGGACTGTGGTCCGAAACGCAGAGCTTAAAGTGGTTCA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 ACCGACAAAATCAGGTTCATGTGGGACTGTGGTCCGAAACGCAGAGCTTAAAGTGGTTCA 1235
Query 1200 CCTTGAGACACGTCTCTCTCTTGGTTACAACCAACCTGGTGAGATTTGTATCCGCGGTCA 1259
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1236 CCTTGAGACACGTCTCTCTCTTGGATACAACCAACCTGGTGAGATTTGTATCCGCGGTCA 1295
Query 1260 ACAAATCATGAAAGAGTACTTGAACGACCCAGAAGCCACTTCAGCAACAATAGACGAAGA 1319
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1296 ACAGATCATGAAAGAGTACTTGAACGATCCAGAAGCCACTTCAGCAACAATAGACGAAGA 1355
Query 1320 AGGTTGGCTTCACACAGGAGACATTGGGTATGTTGACGAAGATGATGAGATCTTCATTGT 1379
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1356 AGGTTGGCTTCACACAGGAGACATTGGATATGTTGATGAAGATGATGAGATTTTCATTGT 1415
Query 1380 TGATCGACTTAAAGAAGTCATCAAGTTCAAAGGCTTTCAGGCAAAACAGGTCCCTCCGGC 1439
||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1416 TGATCGACTTAAAGAAGTCATCAAGTTCAAAGGCTTTCAGG---------TCCCTCCAGC 1466
Query 1440 TGAGCTAGAGAGTTTGCTAATCAATCATCATTCAATTGCGGATGCTGCTGTTGTTCCGCA 1499
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1467 TGAGCTAGAGAGTTTGCTAATCAATCACCATTCAATTGCCGATGCAGCTGTTGTTCCGCA 1526
Query 1500 AAACGATGAAGTCGCTGGGGAAGTTCCGGTGGCTTTCGTGGTGCGATCAAATGGAAATGA 1559
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 AAATGATGAAGTCGCTGGGGAAGTTCCGGTGGCTTTCGTGGTGCGATCAAATGGAAATGA 1586
Query 1560 TATCACTGAAGAAGATATTAAAGAATATGTTGCCAAACAGGTGGTGTTCTATAAGAGATT 1619
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 TATCACTGAAGAAGATGTTAAAGAATATGTTGCCAAACAGGTGGTGTTCTATAAGAGATT 1646
Query 1620 GCACAAGGTTTTCTTTGTTGCTTCCATTCCTAAATCTCCTTCTGGAAAAATTCTGAGAAA 1679
||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1647 GCACAAGGTCTTCTTTGTTGCTTCCATTCCTAAATCTCCTTCGGGAAAAATACTAAGAAA 1706
Query 1680 GGACCTCAAAGCTAAACTTTGTTGA 1704
||||||||||||||| |||||||||
Sbjct 1707 GGACCTCAAAGCTAAGCTTTGTTGA 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5