BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315475

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65113.1 | Symbols: SCRL2 | SCR-like 2 | chr1:24189464-24190...   385    1e-106


> AT1G65113.1 | Symbols: SCRL2 | SCR-like 2 | chr1:24189464-24190026 
FORWARD LENGTH=468
Length=468

 Score =  385 bits (208),  Expect = 1e-106
 Identities = 256/279 (92%), Gaps = 3/279 (1%)
 Strand=Plus/Plus

Query  1    ATGAAATGCGGTGTATTGTTTATGGTTTCTTGTCTTC---TCACATTCCTCGTTCTCAAC  57
            |||||||| ||||| ||||||||| ||||||||||||   |||||||||| ||||||| |
Sbjct  1    ATGAAATGTGGTGTTTTGTTTATGATTTCTTGTCTTCTGATCACATTCCTTGTTCTCAGC  60

Query  58   CATATTAGAGTGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGGCCTTTTCCT  117
            ||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||||| 
Sbjct  61   CATGTTAGAGAGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGACCATTTCCA  120

Query  118  GGACAGTGCGGACCTAATGGAAAGAATACATGTATAAGCGACATaaaaaaaaTACATGGT  177
            ||| |||| ||| ||||||||||| ||||||| ||||||||||| |||||||| | ||||
Sbjct  121  GGAAAGTGTGGAACTAATGGAAAGGATACATGCATAAGCGACATCAAAAAAATGCCTGGT  180

Query  178  GCGCCAAAAGATCTTGTCGCACGTTGCGAATGTTCTCAACGTTTTGTTTGGAAGGGTAAC  237
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  GCGCCAAAAGATCTTGTCGTACGTTGCGAATGTTCTCAACGTTTTGTTTGGAAGGGTTAC  240

Query  238  CCTCCCGAGCGTTTATGTAAATGTCAATATGATTGTTAA  276
            |||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCTCCCGAGCGTTTATGTAAATGTCAATATGATTGTTAA  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5