BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315476
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65140.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1304 0.0
AT1G65170.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 422 4e-117
> AT1G65140.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24201617-24203226 FORWARD LENGTH=957
Length=957
Score = 1304 bits (706), Expect = 0.0
Identities = 878/959 (92%), Gaps = 19/959 (2%)
Strand=Plus/Plus
Query 1 ATGGATTC-ATCAGAGGTTCAAGAAGTGGAGAAACTCGAAGAAATTGATCCAGATCTCTC 59
||||| || |||||||||| ||||| |||||||| ||||||||||||| ||||||||||
Sbjct 4 ATGGA-TCTATCAGAGGTTAAAGAAATGGAGAAAGACGAAGAAATTGATTCAGATCTCTC 62
Query 60 AGACTCGA-ATACAGAGGAATCTGAAGAGGAGATACTCAACGAAACTTCTGTTTCAGCTC 118
|||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||||||
Sbjct 63 AGACTC-AGATACAGAGGAGCCTGAAGAGAAGATACTCGACGCCACTTCACTTTCAGCTC 121
Query 119 TTGATATGATACTAAAGTCTCTGTGGAACATTAGAGTTTTCTTAAGCACT-TTGTTGATG 177
||||||||||||| |||||||||||||||||||| |||||| |||||| | || | ||||
Sbjct 122 TTGATATGATACTCAAGTCTCTGTGGAACATTAGCGTTTTCGTAAGCAATCTT-TCGATG 180
Query 178 GATTATGTTCAAGAAGCAAATCAGAGCCTCACAAATGATGAATCTGTTCCTCTAGAAGAC 237
||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct 181 GATTATGTTCAAGAAGCGAATCAGAGCCTCACAGATAATGAATCTGTTCCTCTACAAGAC 240
Query 238 ATTCTTCGTATTTTTC-TACTCAACAATCTCAGTCTCACTCATCCTCTGGAAGAAAACGG 296
|||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATTCTTCGTA-TTTTCATGCTCAACAATCTCAGTCTCACTCATCCTCTGGAAGCAAACGG 299
Query 297 TGTTTCTAAACTGTTTCTAAACGTCTTGGAGCTTATCCCTCGCTGGAATTCA-CACTTTG 355
|||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||
Sbjct 300 TGTTTCTAAACTGTTTCTAAACATCTTGGAGCTTATCCCTCGCTGGAACT-ATCACTTTG 358
Query 356 AAGTGAACGAAGTCGCGAAAACGATTTGCATTAGATGCAAGACTGATATGGCATATTCAG 415
||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 359 AAGTGAATGAAGTAGCGAAAACGATTTGCATTAGGTGCAAGACGGATATGGCATATTCAG 418
Query 416 GTGAAAGGTCTTATGGTATTATCATCAATGCTAATTCACTC--AG------A-TCTGCAT 466
|||||| |||||||||||| ||||||||||||||||||||| || | |||||||
Sbjct 419 GTGAAACGTCTTATGGTATCATCATCAATGCTAATTCACTCAGAGTATACAAGTCTGCAT 478
Query 467 TCAAGGATTTTGCATTTGAGAATATCCTTAAGGCCATCAGGATCAATGTAAAGAGGCTTT 526
||||||| ||| |||||||||||||| ||||||||| || |||||||||||||| |||||
Sbjct 479 TCAAGGAGTTTACATTTGAGAATATCATTAAGGCCAGCATGATCAATGTAAAGATGCTTT 538
Query 527 GTGATAAGGAAGGATGTGAGAAACGAAACTACGTCGATACTATGATAAGTAACCTTCCAT 586
|||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 539 GTGACAAGGAAGGATGTGGGAAACGAAACTATGTTGATACTATGATAAGTAACCTTCCAT 598
Query 587 CTGCTTTTATTGTTGCACTTCAGTGGGAGAACAATGAGACCGAAAAAGAGATTTTGGACA 646
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 599 CTGCTTTTATAGTTGCACTTCAGTGGGAGAACAATGAGACCGAAAAAGAGATATTCGATA 658
Query 647 CAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCCATATACCGATACGAAGGCGACA 706
||||||||||||||||||||||||||||||||||||| ||||| |||| | ||| ||||
Sbjct 659 CAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCTATATATAGATATGTAGGTGACA 718
Query 707 GTGCGTTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGGAGATCTATACAACT 766
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 GTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGGAAATCTATACAACT 778
Query 767 GTGTAGCTTATGAAAATAATAGATGGGTCAGACATTTTTGTTCTGAGATGGAGGTTATTG 826
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 GTGTAGCTTATGAAAACAATAGATGGGTCAGACATTTTTGTTCTGAGATAGAGGTTATTG 838
Query 827 GAGACTGGGATGGTGTTCTCAGCAGTTTTCGAGAACTGCATATTCGACCTGAGATTCTAT 886
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 839 GAGACTGGGATGGTGTTCTCCGCATTTTTCGAGAACTGCATATTCGACCTGAGATTCTAT 898
Query 887 TCTTTGAAAACGCTATGCCGAGGGACCAGATGTTTTCCGAGCAGGGATCTGAAGACTGA 945
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 899 TCTTTGAAAACGCTATTCTAAAGGACCAGATGTTTTCCGAGCAGGGATCTGAAGACTGA 957
> AT1G65170.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24209613-24211116 FORWARD LENGTH=780
Length=780
Score = 422 bits (228), Expect = 4e-117
Identities = 347/403 (86%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 501 CATCAGGATCAATG--TAAAGAGGCTTTGTGATAAGGAAGGATGTGAGAAACGAAACTAC 558
||||||||| || | |||||| || |||||||||||||||||||| ||||||||||||
Sbjct 309 CATCAGGAT-AA-GCTTAAAGATGCCTTGTGATAAGGAAGGATGTGGGAAACGAAACTAT 366
Query 559 G-TCGATAC-TATGATAAGTAACCTTCCATCTGCTTTT-ATTGTTGCACTTCAGTGGGAG 615
| || | || |||||||| ||| |||||| ||| |||| | |||| ||| |||||||
Sbjct 367 GTTC-A-ACGTATGATAAATAAACTTCCAACTG-TTTTCACAATTGCGCTTGAGTGGGA- 422
Query 616 A-ACAATGAGACCGAAAAAGAGAT-TTTGGACACAGCTTCTGTTCTGGCGACTGAAATAG 673
| |||||||||| ||| |||||| ||| || ||| ||||||||||||||||||| || |
Sbjct 423 ACACAATGAGACTGAAGGAGAGATATTT-GATACAACTTCTGTTCTGGCGACTGAGATTG 481
Query 674 ATATTAGTGCCATATACCGATACGAAGGCGACAGTGCGTTTACCAAATACCGTCTTGTCT 733
|| |||||| ||||||| ||||||||| || ||||| ||||||||||||||||||||||
Sbjct 482 ATGTTAGTGTGATATACCAATACGAAGGTGATAGTGCATTTACCAAATACCGTCTTGTCT 541
Query 734 CAATGGTTTGGTCGCATGGAGATCTATACAACTGTGTAGCTTATGAAAATAATAGATGGG 793
|||||||||| ||| ||||||||| ||||||||| |||||||||||| | ||||||||||
Sbjct 542 CAATGGTTTGCTCGGATGGAGATCGATACAACTGCGTAGCTTATGAAGACAATAGATGGG 601
Query 794 TCAGACATTTTTGTTCTGAGATGGAGGTTATTGGAGACTGGGATGGTGTTCTCAGCAGTT 853
|||||||| || ||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 602 TCAGACATGTTGGTTCTCAGAAAAAGGTTATTGGAGACTGGGATGGTGTTCTCAGCATTT 661
Query 854 TTCGAGAACTGCATATTCGACCTGAGATTCTATTCTTTGAAAA 896
|||||||||||||||||||| |||||||||| || ||||||||
Sbjct 662 TTCGAGAACTGCATATTCGATCTGAGATTCTGTTTTTTGAAAA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5