BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315485
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38030.1 | Symbols: | Rhamnogalacturonate lyase family prot... 1327 0.0
AT1G65210.1 | Symbols: | Galactose-binding protein | chr1:2422... 857 0.0
> AT4G38030.1 | Symbols: | Rhamnogalacturonate lyase family protein
| chr4:17863073-17866730 REVERSE LENGTH=2137
Length=2137
Score = 1327 bits (718), Expect = 0.0
Identities = 1164/1370 (85%), Gaps = 67/1370 (5%)
Strand=Plus/Plus
Query 7 TCGAAGAAGAAGATAACTTCGTTAATTATCTG-TTCTTTTCTGTTGCTTCTTCTTCCAAT 65
||| |||||||||| |||||||| |||| || ||| |||||||||||||||||||| |
Sbjct 7 TCGCAGAAGAAGATCGCTTCGTTATTTATTTGTTTC-CTTCTGTTGCTTCTTCTTCCACT 65
Query 66 CGCGTTTTCTAGGCCGACAAGAAACTTAGATGGAACAAGTCCAAGAGCTCCAACTGTTCA 125
| | ||||| | ||||||||| ||||||||||||| |||| ||||||||||||| || ||
Sbjct 66 CTCCTTTTCCAAGCCGACAAGGAACTTAGATGGAATAAGTGCAAGAGCTCCAACAGTGCA 125
Query 126 ACAAATAAGAAACAG--A-CATGGAACTAGAGAGGTGATAGTGGACAATGGGATTATTC- 181
|| ||||||| ||| | ||||| |||||||||||||||||||||||||||| || ||
Sbjct 126 GCAGATAAGAAGCAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGA-TAATCA 184
Query 182 GTGTCAGTTTCTC-AAGTCCTCAAGGACTTATAACTGGCATCAAATACAAAGGAGTCAAT 240
| ||||||||||| || ||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 185 GAGTCAGTTTCTCGAA-TCCTCAAGGACTTATAACTGGGATCAAATACAAAGGAATTGAT 243
Query 241 AATGTTC-TCAGTCCACATCAACGAGCTCGAGGGTACTGGGACATAACATGGCAAGGAGA 299
||||||| ||| |||||||| |||| | ||||||||||||||||||||||||||||| |
Sbjct 244 AATGTTCTTCA-TCCACATCTCCGAGATAGAGGGTACTGGGACATAACATGGCAAGGA-A 301
Query 300 -AAAGACTCG---TGGTGGCATAGATCGAATCGAAGGAACTAAA-TTTAGAATCATAACT 354
||| | ||| || ||| ||||||||||||||||||| ||| ||||||||||| |||
Sbjct 302 CAAACATTCGCCAAGGCGGCTTAGATCGAATCGAAGGAAC-AAATTTTAGAATCATCACT 360
Query 355 CAAAACCAAGAACAAGTGGAGATTTCATTCTCTAGAACATGGGAGAGTGGTTCTGGTTCT 414
|||| |||||||||||||||||| || ||||||||||||| || || || ||| |
Sbjct 361 CAAACCCAAGAACAAGTGGAGATATCGTTCTCTAGAACAT-GG-GA--GG--ATGG---T 411
Query 415 CATATTATTCCATTAAACGTAGACAAGAGGTATATTATACGTACAAATTCTTCAGGACTC 474
| | |||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||
Sbjct 412 C--A-TATTCCATTAAACGTAGACAAGAGGTATATCATACGTAGAAATACTTCAGGAATC 468
Query 475 TACGCATACGGAATTTTCGAGAGGCTTCCCGAATGGCCAGAAGTTGAGATGGG-TCAAGT 533
||| |||||||| |||||||| |||||||||||||||||| | || ||||| | || |
Sbjct 469 TACATGTACGGAATCTTCGAGAGACTTCCCGAATGGCCAGAACTCGACATGGGTTTAA-T 527
Query 534 TCGAAT-GGTATTCAAACTCGACCAAGATAAG-TTTCATTACATGGCAGTCGCGGATGAT 591
|||||| | | ||||||||| ||| || || |||||||||||||| || |||||| ||
Sbjct 528 TCGAATCGCT-TTCAAACTCAACCCTGA-GAGATTTCATTACATGGCGGTGGCGGATAAT 585
Query 592 ATACAAAGAGAGATGCTAACGGACA-ATGACCGCGATATCCATCGTGGTCATGCCAAGGC 650
||||||||| |||| |||||| | ||||||| || ||| | |||||||||||||||||
Sbjct 586 CGACAAAGAGAAATGCCAACGGA-AGATGACCGTGACATCAAACGTGGTCATGCCAAGGC 644
Query 651 TCTTGGTTATAAAGAGGCTGTACAATTGATTCATCCTCATAACTCCATGTTCAAAGACCA 710
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 645 TCTTGGTTATAAAGAGGCTGTACAATTGACTCATCCTCATAACTCCATGTTCAAAAACCA 704
Query 711 AGTTGATGATAAATACCAATACTCATGTGAGATCAAAGACATCAAGGTGCATGGTTGGAT 770
|| |||||||| ||||| ||| |||||||||||||||||| ||| ||||| ||||||||
Sbjct 705 GGTGGATGATAAGTACCAGTACACATGTGAGATCAAAGACAACAAAGTGCACGGTTGGAT 764
Query 771 CTCAACTAAATCCCACGTTGGCTTTTGGATTATCTCATCGAGTGGCGAATATCGCTTTGG 830
|||||| || |||| || ||||||||||| |||||| | || || |||||||||| ||
Sbjct 765 CTCAACCAAGTCCCGTGTCGGCTTTTGGATCATCTCACCAAGCGGTGAATATCGCTCCGG 824
Query 831 TGGACCGATGAAACAAGAGCTCACATCTCATGTCGG-CCCAACAGCCATTGCAAGCTTT- 888
||||||||| |||||||||||||| ||||| ||||| |||| | ||||| | | ||||
Sbjct 825 TGGACCGATCAAACAAGAGCTCACGTCTCACGTCGGACCCA-CGGCCATCACGA-CTTTT 882
Query 889 ATAAGCGGGCATTATGTTGGTACGGACATGGACACACGTTACAAAAGTGGTGAAGCGTGG 948
|||||||| |||||||||||| |||||||||| ||| ||||| | |||||||||||||
Sbjct 883 ATAAGCGGACATTATGTTGGTGCGGACATGGAGGCACATTACAGACCTGGTGAAGCGTGG 942
Query 949 AAAAAAGTCTTAGGACCTATTTTTATTTACTTAAACTCCGG--C-----G-A----T--G 994
||||| ||||| |||||| ||||||||||||||||||| | | | | | |
Sbjct 943 AAAAAGGTCTTGGGACCTGTTTTTATTTACTTAAACTCTGATTCTACCAGCAACAATAAG 1002
Query 995 ----AA--TTA-TTATGGGAAGATGCTAAACGACAGTCT-AAAGAAGAAGTTAAAGCCTG 1046
|| || ||||||||||||||||||| |||||| ||| ||||||| ||||||||
Sbjct 1003 CCTCAAGATTTGTTATGGGAAGATGCTAAACAACAGTCCGAAA-AAGAAGTCAAAGCCTG 1061
Query 1047 GCCGTACGATTTTGTAGCATTCTCTGACTTTCCTTCTCGTCGAGAAAGAGGAACCGTTAC 1106
|||||||||||||||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct 1062 GCCGTACGATTTTGTAGCATCCTCTGACTATCTTTCTCGTCGAGAAAGAGGAAGCGTCAC 1121
Query 1107 CGGTCGTCTTCTAGTCAACGACGGATTCTTAACGCCGGGGAGATTTGCATATGTCGGTTT 1166
|||||||| |||||||||||| ||||||| |||||||| | || |||||||||||||||
Sbjct 1122 TGGTCGTCTACTAGTCAACGACAGATTCTTGACGCCGGGAAAATCTGCATATGTCGGTTT 1181
Query 1167 AGCACCACCGGGAGAAGCTGGTTCGTGGCAGACAAATACTAAGGGTTATCAGTTTTGGAC 1226
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1182 AGCACCGCCGGGAGAAGCTGGTTCGTGGCAGACAAATACTAAGGGATATCAGTTTTGGAC 1241
Query 1227 AAAGACGAACGAAACCGGTTATTTCAAGATTGATAACGTTAGACCAGGAACTTACAATCT 1286
|||||||||||||||||||| |||| ||| || ||||||||||| ||||||||||||||
Sbjct 1242 CAAGACGAACGAAACCGGTTACTTCACGATAGAAAACGTTAGACCGGGAACTTACAATCT 1301
Query 1287 CTATGGATGGGTTCAC-GGTTTAATCGGAGACTTTCTATACCAAAACCTT 1335
||||||||||||| | ||||| ||||| ||||||| |||||||||||||
Sbjct 1302 GTATGGATGGGTTC-CTGGTTTTATCGGGGACTTTCGATACCAAAACCTT 1350
Score = 732 bits (396), Expect = 0.0
Identities = 536/604 (89%), Gaps = 8/604 (1%)
Strand=Plus/Plus
Query 1339 CCTAGAAATGGTCCAACGCTATGGGAGATTGGTGTACCGGATAGAACAGCACGAGAATAC 1398
||||| || ||||||||| ||||||||||||||||||||||| |||| || |||||||||
Sbjct 1405 CCTAGGAACGGTCCAACGTTATGGGAGATTGGTGTACCGGATCGAACCGCTCGAGAATAC 1464
Query 1399 TTTGTACCGGAGCCATACAAGAACACAATGAACCCTTTATATCTAAACCACACGGACAAG 1458
||| ||||||||||||||||| | |||||||| || ||||| ||||||||||| ||||||
Sbjct 1465 TTTATACCGGAGCCATACAAGGATACAATGAATCCGTTATACCTAAACCACACCGACAAG 1524
Query 1459 TTTAGGCAATACGGATTATGGCAACGATACACAGAGTTATATCCAAATCATGACCTCATT 1518
||||| || |||||| | |||||||||||||||||||||||||||| |||||| ||| |
Sbjct 1525 TTTAGACAGTACGGACTGTGGCAACGATACACAGAGTTATATCCAACTCATGATCTCGTC 1584
Query 1519 TACACAATTGGAGTTAGTAAGTATAGCCAAGACTGGTTCTACGCTCAAGTCACAA-GAAA 1577
|||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 1585 TACACAGTTGGAGTTAGTAACTATAGCCAAGACTGGTTCTACGCCCAAGTCACAAGGAAA 1644
Query 1578 CAACGGTGATTCGACGTACACACCAACTACATGGCAGATCGTGTTTCATCTTCCATACGT 1637
| |||||||| |||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 1645 -ACCGGTGATTTAACGTACGTACCAACAATATGGCAGATCGTGTTTCATCTTCCATACGT 1703
Query 1638 GAACAT-GAGAGGAAGCTACACATTGCAGCTAGCTTTAGCCTCGGCTGCACGGGCTAATC 1696
||| | | |||| ||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1704 AAAC-TCGCGAGGCAGCTACACATTGCAGGTAGCTTTAGCCTCGGCTGCATGGGCTAATC 1762
Query 1697 TACAAGTACGGTTCAATAACGAATACACGAGGCCATTCTTCTCAACGGGCTA-TATTGGA 1755
||||||| ||| |||||||| || || || |||| || ||||||||||| || ||| |||
Sbjct 1763 TACAAGTTCGGATCAATAACCAAAACTCGTGGCCGTTTTTCTCAACGGG-TACTATCGGA 1821
Query 1756 AGAGATAATGCTATAGCAAGACATGGAATCCATGGACTCTACCGGCTTTATAGCATCAAT 1815
| ||| |||||||||||||||||||||||||||||| | ||||||||||||| |||| ||
Sbjct 1822 AAAGACAATGCTATAGCAAGACATGGAATCCATGGAATGTACCGGCTTTATACCATCGAT 1881
Query 1816 GTACCTGGAAGATTGCTACGAACAGGGACCAACACGATTTATCTTCGACAATCTAAAGCA 1875
|| |||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1882 GTGCCTGGAAGGTTGCTAAGAACCGGGACCAACACGATTTATCTTCGACAGCCTAAAGCA 1941
Query 1876 TCA-GGACCATTTGAAGGACTTATGTATGATTACATTCGTCTCGAAGAGCCTTCTAGAGT 1934
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1942 -CAAGGACCATTTGAAGGTCTTATGTATGATTACATTCGTCTAGAAGAGCCTTCTAGAGC 2000
Query 1935 TTAG 1938
||||
Sbjct 2001 TTAG 2004
> AT1G65210.1 | Symbols: | Galactose-binding protein | chr1:24224812-24225815
FORWARD LENGTH=747
Length=747
Score = 857 bits (464), Expect = 0.0
Identities = 526/555 (95%), Gaps = 7/555 (1%)
Strand=Plus/Plus
Query 1383 AAC-AGCACGAGAATACTTTGTACCGGAGCCATACAAGAACACAATGAACCCTTTATATC 1441
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 AACGAGCTCGAGAATACTTTGTACCGGAGCCATACAAGAACACAATGAACCCTTTATATC 250
Query 1442 TAAACCACACGGACAAGTTTAGGCAATACGGATTATGGCAACGATACACAGAGTTATATC 1501
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 251 TAAACCACACGGACAAGTTTAGGCAGTACGGATTATGGCAACGATACACAGAGTTATATC 310
Query 1502 CAAATCATGACCTCATTTACACAATTGGAGTTAGTAAGTATAGCCAAGACTGGTTCTACG 1561
|||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 311 CAAACCATGACCTCATCTACACAATTGGAGTTAGTAACTATAGCAAAGACTGGTTCTACT 370
Query 1562 CTCAAGTCACAAGAAACAA-CGGTGATTCGACGTACACACCAACTACATGGCAGA-TCGT 1619
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||| | ||
Sbjct 371 CTCAAGTCACAAGAAA-AATCGGTGATTCAACGTACACACCAACTACATGGCAGACT-GT 428
Query 1620 GTTTCATCTTCCATACGTGAACATGAGAGGAAGCTACACATTGCAGCTAGCTTTAGCCTC 1679
||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||
Sbjct 429 GTTTCATCTTCCATATGTAAACATGCGAGGTAGCTACACATTGCAGCTAGCTTTAGCCTC 488
Query 1680 GGCTGCACGGGCTAATCTACAAGTACGGTTCAATAACGAATACACGAGGCCATTCTTCTC 1739
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 489 GGCTGCATGGGCTAATCTACAAGTACGTTTCAATAACGAATACACGAGGCCATTTTTCTC 548
Query 1740 AACGGGCTATATTGGAAGAGATAATGCTATAGCAAGACATGGAATCCATGGACTCTACCG 1799
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 AACGGGATATATTGGAAGAGATAATGCTATAGCAAGACATGGAATCCATGGACTCTATCG 608
Query 1800 GCTTTATAGCATCAATGTACCTGGAAGATTGCTACGAACAGGGA-CCAACACGATTTATC 1858
||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||
Sbjct 609 GCTTTATAGCATCAATGTACCTGGAAGGTTGCTACGCAC-GGGAACCAACACGATTTATC 667
Query 1859 TTCGACAATCTAAAGCATCAGGACCATTTGAAGGACTTATGTATGATTACATTCGTCTCG 1918
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 668 TTCGACAAGCTAAAGCATCAGGACCACTTGAAGGAGTTATGTATGATTACATTCGTCTCG 727
Query 1919 AAGAGCCTTCTAGAG 1933
|||||||||||||||
Sbjct 728 AAGAGCCTTCTAGAG 742
Score = 292 bits (158), Expect = 7e-78
Identities = 183/195 (94%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 78 GCCGACAAGAAACTTAGATGGAACAAGTCCAAGAGCTCCAACTGTTCAACAAATAAGAAA 137
||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 9 GCCGATAAGAAACTTAGATGGACCAAGTGGAAGAGCTCCAACTGTTCAACAAATAAGAAA 68
Query 138 CAGACATGGAACTAGAGAGGTGATAGTGGACAATGGGATTATTCGTGTCAGTTTCTCAAG 197
|| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 69 CAAACATGGGACTAGAGAGGTGATAGTGGACAACGGGATTATTAGTGTCAGTTTCTCGAG 128
Query 198 TCCTCAAGGACTTATAACTGGCATCAAATACAAAGGAGTCAATAATGTTCTC-AGTCCAC 256
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 129 TCCCCAAGGACTTATAACTGGCATCAAATACAAAGGAGTCAATAATGTTCTCCA-TCCAC 187
Query 257 ATCAACGAGCTCGAG 271
|||||||||||||||
Sbjct 188 ATCAACGAGCTCGAG 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95983442040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5