BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315511
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00530.1 | Symbols: YCF10 | CemA-like proton extrusion prote... 1064 0.0
> ATCG00530.1 | Symbols: YCF10 | CemA-like proton extrusion protein-related
| chrC:60741-61430 FORWARD LENGTH=690
Length=690
Score = 1064 bits (576), Expect = 0.0
Identities = 593/601 (99%), Gaps = 1/601 (0%)
Strand=Plus/Plus
Query 49 TTTG-AAACTTGGATTACTAATTGGTGGAATACTAGACAATGCGAAACTTTTTTGAATGA 107
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 TTTGAAAACTTGGATTACTAATTGGTGGAATACTAGACAATGCGAAACTTTTTTGAATGA 149
Query 108 TATTCAAGAAAAAAGTGTTCTAGAAAAATTCATACAATTAGAAGAACTATTCCAGCTCGA 167
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 150 TATTCAAGAAAAAAGTTTTCTAGAAAAATTCATACAATTAGAGGAACTATTCCAGCTCGA 209
Query 168 TGAAATGATAAAGGAATACCCAGAAACCGATTTACAACAATTTCGTCTAGGAATCCACAA 227
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 210 TGAAATGATAAAGGAATACCCAGAAACCAATTTACAACAATTTCGTCTAGGAATCCACAA 269
Query 228 AGAAACGATCCAATTCATCAAGATACACAATGAGTATCGTATCCATACAATCTTGCACTT 287
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 270 AGAAACGATCCAATTCATCAAGATACACAATGAGTATAATATCCATACAATCTTGCACTT 329
Query 288 CTCGACAAATCTAATATCTTTCGTTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAA 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CTCGACAAATCTAATATCTTTCGTTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAA 389
Query 348 GCTTTTTATTCTGAATTCGTGGGTTCAAGAATTCCTATATAATTTAAGTGATACAATTAA 407
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GCTTTTTATTCTGAATTCTTGGGTTCAAGAATTCCTATATAATTTAAGTGATACAATTAA 449
Query 408 AGCTTTTTCGATTCTTTTATTAACTGATTTATGTATCGGATTCCATTCGCCTCACGGTTG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AGCTTTTTCGATTCTTTTATTAACTGATTTATGTATCGGATTCCATTCGCCTCACGGTTG 509
Query 468 GGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTATGAGCAAATTTT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTATGAGCAAATTTT 569
Query 528 ATCTGGTCTAGTTTCTACCTTTCCAGTCATTCTTGATACAATTTTTAAATATTGGATTTT 587
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 570 ATCTGGTCTAGTTTCTACCTTTCCAGTAATTCTTGATACAATTTTTAAATATTGGATTTT 629
Query 588 TCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATGCAATAAACGACTA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATGCAATAAACGACTA 689
Query 648 A 648
|
Sbjct 690 A 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5