BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315554

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00530.1 | Symbols: YCF10 | CemA-like proton extrusion prote...   309    2e-83


> ATCG00530.1 | Symbols: YCF10 | CemA-like proton extrusion protein-related 
| chrC:60741-61430 FORWARD LENGTH=690
Length=690

 Score =  309 bits (167),  Expect = 2e-83
 Identities = 173/176 (98%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  164  aaaCCGATTTACAACAATTTCGTCTAGGAATCCACAAAGAAACGATCCAATTCATCAAGA  223
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  AAACCAATTTACAACAATTTCGTCTAGGAATCCACAAAGAAACGATCCAATTCATCAAGA  292

Query  224  TACACAATGAGTATCGTATCCATACAATCTTGCACTTCTCGACAAATCTAATATCTTTCG  283
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  TACACAATGAGTATAATATCCATACAATCTTGCACTTCTCGACAAATCTAATATCTTTCG  352

Query  284  TTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAAGCTTTTTATTCTGAATTCT  339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  TTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAAGCTTTTTATTCTGAATTCT  408


 Score =  285 bits (154),  Expect = 3e-76
 Identities = 161/164 (98%), Gaps = 2/164 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAAAAAAGAAAGCATTGATTCCttttttttATTTTAC-ATCTATAGTCTTTTTGCC  59
            |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct  1    ATGGCAAAAAAGAAAGCATTCATTCCTTTTTTTTATTTT-CTATCTATAGTCTTTTTGCC  59

Query  60   CTGGTTGATCTCTCTCTGCTGTAATAAAAGTTTGAAAACTTGGATTACTAATTGGTGGAA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   CTGGTTGATCTCTCTCTGCTGTAATAAAAGTTTGAAAACTTGGATTACTAATTGGTGGAA  119

Query  120  TACTAGACAATGCGAAACTTTTTTGAATGATATTCAAGaaaaaa  163
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TACTAGACAATGCGAAACTTTTTTGAATGATATTCAAGAAAAAA  163


 Score =  248 bits (134),  Expect = 4e-65
 Identities = 136/137 (99%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  339  TGATACAATTAAAGCTTTTTCGATTATTTTATTAACTGATTTATGTATCGGATTCCATTC  398
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  438  TGATACAATTAAAGCTTTTTCGATTCTTTTATTAACTGATTTATGTATCGGATTCCATTC  497

Query  399  GCCTCACGGTTGGGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTA  458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  498  GCCTCACGGTTGGGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTA  557

Query  459  TGAGCAAATTTTATCTG  475
            |||||||||||||||||
Sbjct  558  TGAGCAAATTTTATCTG  574



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5