BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315564
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152... 1387 0.0
ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:843... 1387 0.0
> ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312
FORWARD LENGTH=825
Length=825
Score = 1387 bits (751), Expect = 0.0
Identities = 803/825 (97%), Gaps = 15/825 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
Query 121 CGTAATGCCAAAGGAATAATTACCGCAAGGCATAAAGGGGGAGGTCATAAGCGTCTATAC 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
Query 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
Query 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATAGTGAGAAGAGA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
Query 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTTTGGTACAGAAGTT 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
Query 361 CCTATAAAAATGGGAAATGCCCTACC--T------T-TG-----A-GCACGGCCATACAT 405
|||||||||||||||||||||||||| | | || | ||||||||||||||
Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420
Query 406 AATATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 465
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AATATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480
Query 466 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540
Query 526 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600
Query 586 AAAAGTTTGGGTAGAGCCGGATCAAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 645
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660
Query 646 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720
Query 706 AGaaaaaaaCCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGaaaaagg 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGG 780
Query 766 aaaaaaTATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 810
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825
> ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:84337-85843
REVERSE LENGTH=825
Length=825
Score = 1387 bits (751), Expect = 0.0
Identities = 803/825 (97%), Gaps = 15/825 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
Query 121 CGTAATGCCAAAGGAATAATTACCGCAAGGCATAAAGGGGGAGGTCATAAGCGTCTATAC 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
Query 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
Query 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATAGTGAGAAGAGA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
Query 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTTTGGTACAGAAGTT 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
Query 361 CCTATAAAAATGGGAAATGCCCTACC--T------T-TG-----A-GCACGGCCATACAT 405
|||||||||||||||||||||||||| | | || | ||||||||||||||
Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420
Query 406 AATATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 465
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AATATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480
Query 466 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540
Query 526 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600
Query 586 AAAAGTTTGGGTAGAGCCGGATCAAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 645
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660
Query 646 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720
Query 706 AGaaaaaaaCCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGaaaaagg 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGG 780
Query 766 aaaaaaTATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 810
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5