BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315571

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65352.1 | Symbols:  | Putative membrane lipoprotein | chr1:...   377    2e-104


> AT1G65352.1 | Symbols:  | Putative membrane lipoprotein | chr1:24277772-24278298 
FORWARD LENGTH=246
Length=246

 Score =  377 bits (204),  Expect = 2e-104
 Identities = 232/246 (94%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAATGGTGTTCAGGAAAATTGTGTTTATTGCCTTCTTATTGTCCCTTTCATGT  60
            ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    ATGGAGAAAATAGTGTTCAGGAAAATTGTGTTTGTTGCCTTCTTATTGTCCCTTTCATGT  60

Query  61   TTATTGGAGGGAGAAGCAAGAATTAGTGGAGATATAACAATACAACGTGGAGGGTCTTGC  120
            ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct  61   TTATTGGAGGGAGAAGCAAGAATGAGTGGAGATGTAACAATACAACGTGGAGGGTCTTGC  120

Query  121  AACAACGACAATACTTGTCACGATACATGTCCGGGTTGTCGTGTAACACAATGTATTTTC  180
            |||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct  121  AACAACGACAATACCTGTCACGATACATGTCCGGGTTGCCGTATCACACAATGTATTTTC  180

Query  181  AGCCAATGTGTCTGTTCTCGTTGTAATACCCCACGATCAAGTTTACGTATTAAATCTCAT  240
            || |||||||| ||| |||||||||| || ||||||||||||||||||||| ||||||||
Sbjct  181  AGGCAATGTGTTTGTACTCGTTGTAACACTCCACGATCAAGTTTACGTATTGAATCTCAT  240

Query  241  ATGTAA  246
            ||||||
Sbjct  241  ATGTAA  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5