BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315582
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65450.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2134 0.0
> AT1G65450.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:24315814-24319064 FORWARD LENGTH=1583
Length=1583
Score = 2134 bits (1155), Expect = 0.0
Identities = 1289/1355 (95%), Gaps = 4/1355 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTCTTCGTACCAAGAATCTCCACCATTGCTTCTTCAAGATCTCAAGGTTACTATC 60
||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||
Sbjct 62 ATGGGTTCTTCGTACCAAGAATCTCCACCGTTGCTTCTTGAAGATCTTAAGGTTACGATC 121
Query 61 AAAGAATCATCACTCATTTTCCCATCCGATGAAACCAGTGAGAGAAAATCCATGTTCTTG 120
||||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 122 AAAGAATCAACACTCATTTTCCCATCTGAAGAAACCAGCGAGAGAAAATCCATGTTCTTA 181
Query 121 TCCAACGTCGACCAAATACTCAACTTTGACGTCCAAACAGTTCATTTCTTCCGACCAAAC 180
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 182 TCCAACGTCGACCAAATTCTCAACTTTGACGTTCAAACAGTTCATTTCTTCCGACCTAAC 241
Query 181 AAAGATTTTCCTCCGGAGATGGTGTCGGAGAAGCTGAGAAAGGCGTTGGTGAAAGC-CAT 239
|| || ||||| ||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 242 AAGGAGTTTCCACCGGAGATGGTCTCGGAGAAGCTGAGAAAGGCGTTGGTGAAA-CTCAT 300
Query 240 GGACGCTTATGAGTTCTTGGCCGGGAGACTCCGGGTGGATCCTAGCTCTGGACGGCTGGA 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 301 GGACGCTTATGAGTTCTTGGCCGGGAGACTCCGCGTGGATCCTAGCTCTGGACGGCTTGA 360
Query 300 TGTTGACTGTAATGGCGCCGGAGCTGGCTTTGTGACGGCGGCGAGTGAGTACACGTTGGA 359
|||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TGTTGACTGTAACGGTGCTGGAGCTGGCTTTGTGACGGCGGCGAGTGACTACACGTTGGA 420
Query 360 GGAACTTGGAGATTTGGTTTATCCAAATCCAGCTTTTGCTCAGTTGGTTACAAGTCAGCT 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GGAACTTGGAGATTTGGTTTATCCAAATCCAGCTTTTGCTCAATTGGTTACAAGTCAGCT 480
Query 420 TCCA-AGTTTGCCCAAAGATGATCAACCCTTGTTCGCCTTTCAGGTAACATCATTCAAGT 478
| || ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 481 T-CAGAGTTTGCCCAAAGATGATCAACCCTTGTTTGTCTTTCAGATAACATCATTCAAGT 539
Query 479 GCGGTGGATTTGCAATGGGAATCTCAACAAACCATACAACGTTCGATGGGCTAAGTTTCA 538
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 540 GCGGTGGATTTGCAATGGGAATCTCAACAAACCATACCACGTTCGATGGACTTAGTTTCA 599
Query 539 AAACATTCCTCGAAAACTTAGCCTCTCTACTTCATGAGAAGCCCTTATCAACACCTCCAT 598
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 600 AAACATTCCTCGAAAACTTAGCTTCTCTACTTCACGAGAAGCCCTTATCAACACCTCCAT 659
Query 599 GCAACGACCGTACTCTTCTCAAAGCTCGTAACCCACCAAGTGTCACATTCCCACACCACG 658
||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 660 GCAACGACCGTACTCTTCTCAAAGCTCGTGATCCACCAAGTGTTGCATTCCCACACCACG 719
Query 659 AGCTTGTCAAGTTCCAAGACTGTGAGACAACAACAGTCTTCGAAGCCACTTCACAGCACT 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 720 AGCTTGTCAAGTTCCAAGACTGTGAGACAACAACAGTCTTCGAAGCTACTTCAGAGCACT 779
Query 719 TAGACTTCAAGATCTTCAAGCTATCCTCTGAGCAAATCAAGAAGCTCAAGGAGAGAGCCT 778
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TAGACTTCAAGATCTTCAAGCTATCCTCTGAACAAATCAAGAAGCTCAAGGAGAGAGCCT 839
Query 779 CGGAGACTAGTAGTGGTTATGTTCGCGTGACGGGTTTCAACGTTGTAACCGCTTTGGTCT 838
| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAGAGACTAGTAACGGTAATGTTCGCGTGACGGGTTTCAACGTTGTAACCGCTTTGGTCT 899
Query 839 GGAGGTGCAAGGCACTCTCTGTAGCAGCAGAGGAAGGAGAAGAAACCAATCTTGAAAGAG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGAGGTGCAAGGCACTCTCTGTAGCAGCAGAGGAAGGAGAAGAAACCAATCTTGAAAGAG 959
Query 899 AATCAACGATTCTTTATGCGGTGGACATTAGAGGGAGGCTGAATCCTGAGCTTCCACCGT 958
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATCAACGATTCTTTATGCTGTGGACATTAGAGGGAGGCTGAATCCTGAGCTTCCACCGT 1019
Query 959 CCTACACTGGAAACGCGGTTTTAACTGCTTACGCAAAGGCGAAATGTAAGGCATTGCTTG 1018
| ||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||
Sbjct 1020 CTTACACTGGAAACGCGGTTTTAACGGCATACGCAAAGGAGAAATGCAAGGCATTGCTTG 1079
Query 1019 AAGAGCCGTTTGGGAGGATTGTGGAAATAGTAGGAGAAGGGGCAAATAGGATAACGGATG 1078
|||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||
Sbjct 1080 AAGAGCCGTTTGGGAGGATTGTAGAAATGGTAGGAGAAGGGTCAAAGAGGATAACGGATG 1139
Query 1079 AGTATGCGCGGTCTGCTATAGATTGGGGAGAGTTATACAAAGGGTTTCCACATGGGGAAG 1138
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1140 AGTATGCGCGGTCTGCTATAGATTGGGGAGAGTTATACAAAGGGTTTCCCCATGGGGAAG 1199
Query 1139 TTTTGGTTTCTTCGTGGTGGAAACTCGGTTTCGCAGAGGTTGAGTATCCTTGGGGCAAGC 1198
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1200 TTTTGGTTTCTTCTTGGTGGAAACTCGGATTCGCAGAGGTTGAGTATCCTTGGGGAAAGC 1259
Query 1199 CTAAGTATAGCTGTCCCGTTGTCTATCATCGAAAAGACATAGTTTTGCTGTTTCCGGACA 1258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1260 CTAAGTATAGCTGTCCCGTTGTCTATCATCGAAAAGACATTGTTTTGCTGTTTCCGGACA 1319
Query 1259 TCGATGGAGATAGTAAAGGTGTTTATGTCTTGGCTGCTTTACCTTCTAAGGAGATGACAA 1318
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1320 TCGATGGAGATAGTAAAGGTGTTTATGTCTTGGCTGCTTTGCCTTCTAAGGAGATGTCCA 1379
Query 1319 AGTTTCAGCATTGGTTTGAAGACACTCTCTGCTGA 1353
|||||||||| ||||||||||||||||| ||||||
Sbjct 1380 AGTTTCAGCACTGGTTTGAAGACACTCTGTGCTGA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5