BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315590

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28929.1 | Symbols:  | transposable element gene | chr5:1096...   350    6e-96
  AT4G07324.1 | Symbols:  | transposable element gene | chr4:4121...   252    2e-66


> AT5G28929.1 | Symbols:  | transposable element gene | chr5:10966526-10967632 
REVERSE LENGTH=1107
Length=1107

 Score =  350 bits (189),  Expect = 6e-96
 Identities = 269/307 (88%), Gaps = 8/307 (3%)
 Strand=Plus/Minus

Query  1    ATGAAAGACAACTTCGTGAATTTACTACAT--CATGGATATAGCTCTTGGTTAAAATCAG  58
            |||||||||||||||||||| ||| ||| |  |||  |||||||| |||| |||| ||||
Sbjct  500  ATGAAAGACAACTTCGTGAACTTATTACTTCCCAT--ATATAGCTTTTGGATAAATTCAG  443

Query  59   TGAACAACTCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTAGATGGTCTAT  118
              ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct  442  CAAACAAATCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTTGATGGTATAT  383

Query  119  CAGTGTCCATAGGTTGCTCACACGATCCAGGCT-CGTGTTCACCAAACATATTTGCAGTA  177
            ||||||||| |||||| |||||||||||||| | ||||||||||| ||| ||| | | ||
Sbjct  382  CAGTGTCCACAGGTTGATCACACGATCCAGG-TACGTGTTCACCAGACAAATTCGAATTA  324

Query  178  CTATCAG-GAAAAATATCATCCAAGAGATTTATAGTTGAGTCTAAATCAGCTCGATCAAT  236
             |||| | |||||  ||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct  323  ATATCGGTGAAAAG-ATCATCCAAGAGATTCAAAGTTGAATCTAAATCAGCTCGATCAAT  265

Query  237  ATTAGAAGGTACTCTTGCATTTTCTGTGACACATATATCCTCTCCGTGTAGTATCCAAGT  296
            || ||||||||||||||||||  |||||||||||||||||||||| |||| || ||||||
Sbjct  264  ATCAGAAGGTACTCTTGCATTCCCTGTGACACATATATCCTCTCCATGTAATACCCAAGT  205

Query  297  TGTATAA  303
            |||||||
Sbjct  204  TGTATAA  198


> AT4G07324.1 | Symbols:  | transposable element gene | chr4:4121888-4124050 
FORWARD LENGTH=2163
Length=2163

 Score =  252 bits (136),  Expect = 2e-66
 Identities = 183/206 (89%), Gaps = 2/206 (1%)
 Strand=Plus/Minus

Query  1    ATGAAAGACAACTTCGTGAATTTACTACATCATGGATATAGCTCTTGGTTAAAATCAGTG  60
            |||||||||||||||||||| ||||||||||  ||||||||||||||| |||| ||||  
Sbjct  205  ATGAAAGACAACTTCGTGAACTTACTACATCCCGGATATAGCTCTTGGATAAATTCAGCA  146

Query  61   AACAACTCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTAGATGGTCTATCA  120
            ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  145  AACAAATCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTTGATGGTATATCA  86

Query  121  GTGTCCAT-AGGTTGCTCACACGATCCAGGCTCGTGTTCACCAAACATATTTGCAGTACT  179
            |||||| | | ||||||||||||||||||| | |||||||| | ||||||| | | || |
Sbjct  85   GTGTCC-TCATGTTGCTCACACGATCCAGGTTTGTGTTCACTAGACATATTCGTATTAAT  27

Query  180  ATCAGGAAAAATATCATCCAAGAGAT  205
            ||||||||||| || |||||||||||
Sbjct  26   ATCAGGAAAAAGATTATCCAAGAGAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5