BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315590 Length=303 Score E Sequences producing significant alignments: (Bits) Value AT5G28929.1 | Symbols: | transposable element gene | chr5:1096... 350 6e-96 AT4G07324.1 | Symbols: | transposable element gene | chr4:4121... 252 2e-66 > AT5G28929.1 | Symbols: | transposable element gene | chr5:10966526-10967632 REVERSE LENGTH=1107 Length=1107 Score = 350 bits (189), Expect = 6e-96 Identities = 269/307 (88%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 1 ATGAAAGACAACTTCGTGAATTTACTACAT--CATGGATATAGCTCTTGGTTAAAATCAG 58 |||||||||||||||||||| ||| ||| | ||| |||||||| |||| |||| |||| Sbjct 500 ATGAAAGACAACTTCGTGAACTTATTACTTCCCAT--ATATAGCTTTTGGATAAATTCAG 443 Query 59 TGAACAACTCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTAGATGGTCTAT 118 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 442 CAAACAAATCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTTGATGGTATAT 383 Query 119 CAGTGTCCATAGGTTGCTCACACGATCCAGGCT-CGTGTTCACCAAACATATTTGCAGTA 177 ||||||||| |||||| |||||||||||||| | ||||||||||| ||| ||| | | || Sbjct 382 CAGTGTCCACAGGTTGATCACACGATCCAGG-TACGTGTTCACCAGACAAATTCGAATTA 324 Query 178 CTATCAG-GAAAAATATCATCCAAGAGATTTATAGTTGAGTCTAAATCAGCTCGATCAAT 236 |||| | ||||| ||||||||||||||| | |||||| |||||||||||||||||||| Sbjct 323 ATATCGGTGAAAAG-ATCATCCAAGAGATTCAAAGTTGAATCTAAATCAGCTCGATCAAT 265 Query 237 ATTAGAAGGTACTCTTGCATTTTCTGTGACACATATATCCTCTCCGTGTAGTATCCAAGT 296 || |||||||||||||||||| |||||||||||||||||||||| |||| || |||||| Sbjct 264 ATCAGAAGGTACTCTTGCATTCCCTGTGACACATATATCCTCTCCATGTAATACCCAAGT 205 Query 297 TGTATAA 303 ||||||| Sbjct 204 TGTATAA 198 > AT4G07324.1 | Symbols: | transposable element gene | chr4:4121888-4124050 FORWARD LENGTH=2163 Length=2163 Score = 252 bits (136), Expect = 2e-66 Identities = 183/206 (89%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 1 ATGAAAGACAACTTCGTGAATTTACTACATCATGGATATAGCTCTTGGTTAAAATCAGTG 60 |||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||| Sbjct 205 ATGAAAGACAACTTCGTGAACTTACTACATCCCGGATATAGCTCTTGGATAAATTCAGCA 146 Query 61 AACAACTCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTAGATGGTCTATCA 120 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 145 AACAAATCATCAAAACCTTCTCCTTTTCCACAATTTCCACTTGAAGTTGATGGTATATCA 86 Query 121 GTGTCCAT-AGGTTGCTCACACGATCCAGGCTCGTGTTCACCAAACATATTTGCAGTACT 179 |||||| | | ||||||||||||||||||| | |||||||| | ||||||| | | || | Sbjct 85 GTGTCC-TCATGTTGCTCACACGATCCAGGTTTGTGTTCACTAGACATATTCGTATTAAT 27 Query 180 ATCAGGAAAAATATCATCCAAGAGAT 205 ||||||||||| || ||||||||||| Sbjct 26 ATCAGGAAAAAGATTATCCAAGAGAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14024701971 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5