BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315594
Length=2478
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04110.1 | Symbols: GLR1, ATGLR1.1, GLR1.1 | glutamate recep... 246 7e-64
> AT3G04110.1 | Symbols: GLR1, ATGLR1.1, GLR1.1 | glutamate receptor
1.1 | chr3:1077328-1080405 FORWARD LENGTH=2629
Length=2629
Score = 246 bits (133), Expect = 7e-64
Identities = 511/682 (75%), Gaps = 72/682 (11%)
Strand=Plus/Plus
Query 523 GTGAGAAGTTTTGCAAATATTGGTGGATCATTTCCAAGATGGTGGAGTCCAAATCCAC-C 581
||||| || ||||||||||||||| || |||| |||||| ||| || | || | | |
Sbjct 557 GTGAG-AG-TTTGCAAATATTGGTTGAGAATTTTCAAGATAAAGGAATCTATAT-CGCTC 613
Query 582 GTACTACTTCTTTCT-CAGAATCATCACT-A-GACGAAGATTACATGGTCTATCA-CTAC 637
|| || ||||||| | ||| |||||| | | || ||| || | ||| | |||| |||
Sbjct 614 GTTCTGCTTCTTT-TGCAGTCTCATCA-TCAGGA-GAAAATCATATGATGAATCAGCTAA 670
Query 638 GGAAGCTCAA-GTCCGCGAGAGCAGCCGTTTTCATTGTACATATGTCGGAGATTCTTGTT 696
||||||| || || | | |||||| | ||||| | || |||||||| ||||||||||||
Sbjct 671 GGAAGCTTAAGGT-CTCAAGAGCATCGGTTTTTGTGGTGCATATGTCCGAGATTCTTGTT 729
Query 697 TCTCGTCTCTTCCAATGTGCGGATAAATTAGGAATGATGAAAGAAG-GATATGTTTGGAT 755
||||||||||||||||||| || || ||||| ||||| |||||| | | | ||||||
Sbjct 730 TCTCGTCTCTTCCAATGTGTAGAGAAGTTAGGTTTGATGGAAGAAGCGTTC-GCTTGGAT 788
Query 756 ACTCACCGCAAGAACCATGAATCATTTTCATAACTTAGATGGTTTTGCAGT---TAGGTC 812
||||| |||||||||||||| | | | ||| || ||||||| | ||||||
Sbjct 789 CCTCACTGCAAGAACCATGAA-C-T----A---CTTGGAACATTTTGCAATAACTAGGTC 839
Query 813 AATGCAAGGGGTCATTGGTTTCAGATCATACATTCCAGTATCAGAACATGT-AACGAATT 871
|||||||||||||||||||||| ||| ||||| || ||||| ||| | || || |||||
Sbjct 840 GATGCAAGGGGTCATTGGTTTCAAATCTTACATCCCTGTATCTGAAGAAGTTAA-GAATT 898
Query 872 TTACTTCAAGATTGCGAAAAT-TAATGGTTGATGATGACACCGCACAGATAGAAACTGAG 930
|||||||||||||| | ||| || ||| || ||||| || | || | | | |||
Sbjct 899 TTACTTCAAGATTGAGGAAACGTA-TGG--GA-GATGATAC---A--GA-A-ACA--GAG 945
Query 931 CATTTTAGTGTTGTGATCAGTGTATGGGCACATGATATTGCTTGTATTCTAGCAACTGCA 990
|||| |||||| | ||| || || | ||||| ||||| |||||||||||||||| ||||
Sbjct 946 CATTCTAGTGTAATCATCGGTTTACGCGCACACGATATCGCTTGTATTCTAGCAAATGCA 1005
Query 991 GTAGAGAA-T--A-TCT--G-GCTAA-G---A-GCCTCT---AATGAATCAA---ATCTT 1032
|||||||| | | | | | | ||| | | || ||| |||| |||| |||||
Sbjct 1006 GTAGAGAAGTTCAGTGTAAGTGGTAAAGTTGAAGCATCTTCGAATGTATCAGCTGATCTT 1065
Query 1033 CTTGAGACGATTAAACAGAGTGGATTTAAGGGTTTGAGTCATGGTGACATGCAAATCGT- 1091
|| || || |||| ||| ||| |||| |||||||||||| |||||||| |||||| |
Sbjct 1066 CTGGATACAATTAGACATAGTAGATTCAAGGGTTTGAGT---GGTGACATCCAAATC-TC 1121
Query 1092 TGGCAACAAATATCTCTTAG-GAACATTTGAGATTGTGAATAT-GGTAG-GAACAGGGGT 1148
|| |||||||| | ||| || || ||||||| || |||||||| || || ||| | |
Sbjct 1122 TGACAACAAATTTATCTCAGAGA-CATTTGAAATCGTGAATATTGGAAGAGAAAAACAG- 1179
Query 1149 TAGGAGAATAGGATTATGGAGT 1170
|| || |||||||||||||||
Sbjct 1180 -AGAAGGATAGGATTATGGAGT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122959177293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5