BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315601
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-... 1696 0.0
> AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-24409068
REVERSE LENGTH=1680
Length=1680
Score = 1696 bits (918), Expect = 0.0
Identities = 1245/1404 (89%), Gaps = 18/1404 (1%)
Strand=Plus/Plus
Query 238 TCTGCTATTGATTTGGCTCTTAACTCAGTGGTGAAGGTGTTCACTGTCTCTAACAAGCAT 297
||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||| |
Sbjct 262 TCTGCCATTGATTTGGCCCTCAACTCGGTGGTGAAGGTATTCACCGTCTCTAGCAAGCCT 321
Query 298 AGAAC-TTTTCAACCATGGCAGTTTTGTTTGCAAGA-TGAAGGCACCGGCTCAGGATTTG 355
|| || ||||||||| |||||| || | ||| ||| |||| |||||||||| || ||||
Sbjct 322 AG-ACTTTTTCAACCTTGGCAGATTACTATGC-AGAGTGAAAGCACCGGCTCTGGTTTTG 379
Query 356 TAATCGCGGGAAGGAAGATTCTTACGAATGCTCATGTAGTGGCTAATCACACATCTGTTA 415
||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 380 TAATCTCGGGAAAGAAAATTCTTACGAATGCTCATGTAGTGGCTAATCAAACATCCGTTA 439
Query 416 AAGTCAGAAAACATGGTTC-ACCTACGAAGTACAAAGCAAAAGTTCGAGCAATCGGGCAT 474
||||| |||| |||||||| ||| || ||||||||||||||||||| ||| | || |||
Sbjct 440 AAGTCCGAAAGCATGGTTCAACC-ACAAAGTACAAAGCAAAAGTTCAAGCGGTTGGTCAT 498
Query 475 GAATGTGATTTGGCCATCTTGGATATCGATAGCGATAACTTTTGGGAGGGAATGAACCCC 534
||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||||
Sbjct 499 GAATGTGATTTGGCCATCTTGGAGATTGATAATGATAAGTTTTGGGAGGGAATGAACCCC 558
Query 535 TTGGAACTTGGGGATATACCCTCTCTGCAAGAAAAAGTGTATGTTGTTGGCTATCCAAAA 594
|||||||| ||||||||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 559 TTGGAACTCGGGGATATACCCTCTATGCAGGACACCGTGTATGTTGTTGGCTATCCAAAA 618
Query 595 GGTGGTGATACCATATCCGTTACGAAAGGTGTTGTGTCGAGAGTTGAACTCTTAGAATAC 654
||||||||||||||||||||| |||||||||||||||||||||||| || | || |||||
Sbjct 619 GGTGGTGATACCATATCCGTTTCGAAAGGTGTTGTGTCGAGAGTTGGACCCATAAAATAC 678
Query 655 AGTCACAGCGCCACTGAACTACTGGCAATACAAATAGATGCAGCTATAAATGAA-GGAAA 713
|||||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 679 AGTCACAGCGGCACTGAACTACTGGCAATACAAATAGATGCAGCTATCAAT-AATGGAAA 737
Query 714 TAGTGGCGGTCCGGTAATCATGGGCAACAAAGTGGCTGGTGTAGCATTCGAAACTCTAGG 773
|||||| ||||||||||||||||| |||||||| |||||||||||||| |||| |||| |
Sbjct 738 TAGTGGTGGTCCGGTAATCATGGGAAACAAAGTCGCTGGTGTAGCATTTGAAAGTCTATG 797
Query 774 TTGTTCCGATAGTATAGGCTATATAATTCCAACTCCGGTCATTAGCCATTTTTTAGATGC 833
|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 798 TTATTCCGATAGTATAGGCTACATAATTCCAACTCCGGTCATTAGGCATTTTTTAAATGC 857
Query 834 TGTTGAAGAAAGTGGTCAACATGTTAGTTTCTGCTCAATAAATCTATCATATCAGAATAT 893
| |||||||||||||| || ||||||||||| |||||||||||||| |||||||||| ||
Sbjct 858 TATTGAAGAAAGTGGTGAAGATGTTAGTTTCGGCTCAATAAATCTAACATATCAGAAAAT 917
Query 894 GGAGAATGATCAACTCCGTAACCACTTCAAAATGAGCGACGACATGACAGGGATTGTTAT 953
||| ||||||||||||||||| |||||||||||||||| | |||||||| ||| ||||
Sbjct 918 GGACAATGATCAACTCCGTAAGGACTTCAAAATGAGCGATAAAATGACAGGCATTCTTAT 977
Query 954 aaaaaaaaTAAACCCGCTTTCGGATTCAT-ACAAAGTTCTaaaaaaaaaTGATGTCATTC 1012
||| |||||||||||||||||||| | | |||||||||| |||||| |||| ||||||
Sbjct 978 AAACAAAATAAACCCGCTTTCGGA-TGTTCACAAAGTTCTGAAAAAAGATGACATCATTC 1036
Query 1013 TCGCGATTGATGGTGTTCCTATAGGAAACGATAGTACAGTCCCTTTTCGAAACAAGGAAC 1072
||||||||||||||||||||||||||||||||||| |||||| |||||| || |||||||
Sbjct 1037 TCGCGATTGATGGTGTTCCTATAGGAAACGATAGTTCAGTCCATTTTCGTAAGAAGGAAC 1096
Query 1073 GAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGAAAGAGCGTTACTCAAAG 1132
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||
Sbjct 1097 GAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGAGACAGCATTACTTAAAG 1156
Query 1133 TCTTAAGAGAGGGAAAAGAGTATGAGTTTAGTATTAGTCTAAAACCCGTGCCACGGCTAG 1192
|||||||||||||||||||||||||||||| || |||||||||| |||| |||| ||||
Sbjct 1157 TCTTAAGAGAGGGAAAAGAGTATGAGTTTAATAGTAGTCTAAAATCCGTACCACCACTAG 1216
Query 1193 TTCCAATGCATCAATTTGACAAGCCTCCAAGTTATTATATATTCGGGGGTCTTGTATTTG 1252
|||||| || ||||| ||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1217 TTCCAAAGCGTCAATATGACAAGTCTGCAAGTTATTATATATTCGGGGGTCTTGTTTTTT 1276
Query 1253 TACCTCTAACTAAACCATACATTGATGA-TGCTTCTATTTCCAAATATGCTCTA-GAGAA 1310
|||||||||||||||||||||||||| | | ||| | ||||| ||| ||||||| || ||
Sbjct 1277 TACCTCTAACTAAACCATACATTGAT-AGTTCTTGTGTTTCCGAATCTGCTCTAGGA-AA 1334
Query 1311 GATGCCCAAAAAAGCCGGTGAACAAATCGTAATAATTTCTCAGATTCTGGAGGATGACAT 1370
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 1335 GATGCCCAAAAAAGCCGGTGAACAAGTTGTAATAATTTCTCAGATTCTAGAGGATGACAT 1394
Query 1371 CAATACAGGATACAACATTTTTGAAGATTTGCAGGTGAAGAAAGTGAATGGAGTGCAAGT 1430
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1395 CAATACAGGATACAGTATTTTCGAAGATTTCCAGGTGAAGAAAGTGAATGGAGTGCAAGT 1454
Query 1431 GCATAATCTCAAACATCTATATAATCTCATAGAGGAATGCTGCACAGAAAAAT-TGTTGA 1489
|||||||||||||||||||||||| || ||||||||||||||||||||| | || ||
Sbjct 1455 GCATAATCTCAAACATCTATATAAGCTTGTAGAGGAATGCTGCACAGAAAC-TGTGAGGA 1513
Query 1490 TGGACTTGGAGCAAGATAAGGTTCTCGCCATCGATTATAAATCTGCGAAAAAAG-CTACT 1548
||||||||||| ||||||||||| | || |||||||||| |||||||| |||| | |||
Sbjct 1514 TGGACTTGGAGAAAGATAAGGTTATTACCCTCGATTATAAGTCTGCGAAGAAAGTC-ACT 1572
Query 1549 TCTAAGATCTTGAAAAAACTTGAAATACCCTCGGCCATGTCCAAGGACCTTAAGCCTAGA 1608
|||||||||||||||| || ||||||| |||||| |||| |||| ||| |||||| |
Sbjct 1573 TCTAAGATCTTGAAAAGTCTCAAAATACCATCGGCCGTGTCTGAGGATCTTCAGCCTAAA 1632
Query 1609 CAGTTGAATAGGCGCCGCAGAGTT 1632
|| ||||| |||| ||| ||||
Sbjct 1633 CAACAGAATAAGCGCAGCAAAGTT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5