BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315605
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65710.1 | Symbols: | unknown protein; INVOLVED IN: N-termi... 1544 0.0
AT3G32092.1 | Symbols: | transposable element gene | chr3:1308... 377 2e-103
AT1G65700.3 | Symbols: | Small nuclear ribonucleoprotein famil... 237 3e-61
> AT1G65710.1 | Symbols: | unknown protein; INVOLVED IN: N-terminal
protein myristoylation; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37010.1);
Has 2241 Blast hits to 1776 proteins in 164
species: Archae - 0; Bacteria - 29; Metazoa - 1759; Fungi
- 94; Plants - 93; Viruses - 17; Other Eukaryotes - 249 (source:
NCBI BLink). | chr1:24436901-24438542 REVERSE LENGTH=1642
Length=1642
Score = 1544 bits (836), Expect = 0.0
Identities = 1218/1390 (88%), Gaps = 75/1390 (5%)
Strand=Plus/Plus
Query 1 ATGGGTTGCTGTCTCAGCAAGAAACCTTCTCCTTCTCCTCTTCCCTCTAATGGT--A-CC 57
||||||||||||||||||||||||||||| || || |||||||||||| || | | ||
Sbjct 119 ATGGGTTGCTGTCTCAGCAAGAAACCTTC-CC--CTTCTCTTCCCTCTAGTGTTAAACCC 175
Query 58 TCTTGTACTGTTAAACCCTCAGATCCCATTAAACCAGTGATTAAGCTTTTGGAGGAAGAA 117
|| | | | || ||| | ||||| ||||||||||| ||| |||||||||||||
Sbjct 176 TC-AG-A---TCCAA---TCA-AACCCATGGAACCAGTGATTGAGCCTTTGGAGGAAGAA 226
Query 118 ACAGAACCAAAATCTGAGAAACTGATTC---------AAGAAGAAGAAGTCT-TGGTGAT 167
|| |||| |||||||||||||||| || ||||||||||||| | |||||||
Sbjct 227 GCAAAACCCAAATCTGAGAAACTGAATCAAGAAGAAGAAGAAGAAGAAGT-TGTGGTGAT 285
Query 168 AAAACACAGAATAAGCCATGAAGAGAGTTCCAAGAAGACTGAATCAGATAAAGATTCTCC 227
|||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 286 AAAACACACAAGAAGCCATGAAGAGAGATCCAAGAAGACAGAATCAGATAAAGATTCTCC 345
Query 228 -G-----------GT---GGCTGAGAAACCGAATTCTACACCGGTCGTGAGAATCTCGAG 272
| || |||||||||| |||||||||||||| | ||||||||||| ||
Sbjct 346 AGTTTCTTCTCCTGTGGCGGCTGAGAAATCGAATTCTACACCGCTTGTGAGAATCTCTAG 405
Query 273 CTGTACTAAAGAAGAAGTTGATGCTATATTGATACAATGTGGGAAGCTAAGTAGAAGCAA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CTGTACTAAAGAAGAAGTTGATGCTATATTGATACAATGTGGGAAGCTAAGTAGAAGCAA 465
Query 333 CTCTGCTGCTAAAACAAGAAGATACTCTGGTTC-AAAGAGAAGTTTTGATTTTGACCAGA 391
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 466 CTCTGCTGCTAAAACAAGAAGATACTCTGGTTCTAAA-AGAAGCTTTGATTTTGACCAGA 524
Query 392 ACGAGAGAATTCGCGGCGGCGATACGGAGGAGGAGAGAGACGGAATGGAGCGGAATCGTC 451
|||||||||| |||||||||||| ||| |||||| ||| ||||||| |||| |||||||
Sbjct 525 ACGAGAGAATCCGCGGCGGCGATGCGGCGGAGGA-AGA--CGGAATGCAGCGAAATCGTC 581
Query 452 ACCGTGGAGTAGAGAGAGTTAATGGTTCGCCTCGTGAACGGAGAAGACGAACTCCGAGCA 511
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 582 ACCGTGGAGTAGAGAGAGTGCATGGTTCGCCTCGTGAACGGAGAAGACGAACTCCGAGTA 641
Query 512 GAGAAAGAGAACGATCGGGAAGCAGAGAAAGAGGAAATGGCGGTGGCGGTGGTGGTGGTA 571
||||||||||| ||||||||||||||||||||||||||| ||| || || || |||||||
Sbjct 642 GAGAAAGAGAAAGATCGGGAAGCAGAGAAAGAGGAAATGTCGGCGGTGGCGGCGGTGGTA 701
Query 572 GTAGGCGAGTGAGTAGATCTCCGGCGAAACGATCAGAGGTTCCAAACGCTAATTCGTGTG 631
||||| ||||||||||||||||||||||||| || ||| ||| |||||| |||||||||
Sbjct 702 GTAGGAGAGTGAGTAGATCTCCGGCGAAACGTTCTGAGATTCGTAACGCTGATTCGTGTG 761
Query 632 GTAGTTCGGTAAATTCGAGTAATAGTAGACCGGGAAAGTTTGTTACGATTCCGGCGACGG 691
| |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 762 GCAGTTCGGTAAATTCGAGTAATAATAGACCGGGAAAGTTTGTTACGATTCCTGCAACGG 821
Query 692 ATAAGAGTAACAAAGTAGAGCCGTTGGTAAAACGAATTACGGTTAAGAGAAACATCGGAG 751
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 822 ATAAGAGTAACAATGTAGAGCCGTTAGTAAAACGGATTACGGTTAAGAGAAACATCGGAG 881
Query 752 ACGCTTGTAGAGTTGCAGCGTCTCCGAGATCAAAGTCTCCGGCAAGAGCGGGGAATAATG 811
||||||| ||| | || ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 882 ACGCTTGCAGAATAGCGGCGTCTCCGAGGTCAAAATCTCCGGCTAGAGCGGGGAATAATG 941
Query 812 TTCCCTCGCTAAGCCGGAGCAATTCAAGAAAGGCGGAGCAATCACCGTATAGGAGGAATC 871
||||||||||||||||||| ||||||||||||||||| ||||| || ||||| || ||||
Sbjct 942 TTCCCTCGCTAAGCCGGAGTAATTCAAGAAAGGCGGAACAATCTCCCTATAGAAGAAATC 1001
Query 872 CATTAGGAGAGATTGATCAAAACTCGTCGAAAGCTGGATCTTGTAACACTAAGAAGATGA 931
|||| |||||||||||||||||| | | || | | | || |||
Sbjct 1002 CATTGGGAGAGATTGATCAAAACAC-T--AA-G----A------A-------GA---TGA 1037
Query 932 TAGAATCTGTGAAACCTAATTCAAGAACAAGTAGAGCTCCAAGCCCAAGTCGTGCCGCGG 991
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |
Sbjct 1038 TAGAATCTGTGAAACCTAATTCAAGAACAAGTAGAGGTCCAAGCCCGAGTCGTGTTGCTG 1097
Query 992 TTGTAGAACTTACAAAACCTCCTCAAGTTGTATTAAGCAGAAGCAGATCGTTAAGGAAAT 1051
||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1098 TTGTAGAACTTACGAAAGCTCCTCAAGTTGTGTTAAGCAGAAGCAGATCGTTGAGGAAAT 1157
Query 1052 CGCGAGATTTCGATTTGGTATCAAACGAAGATAACAATTACACTGCATTGTTGTTGAAAG 1111
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1158 CTCGAGATTTCGATTTGGTATCAAACGAGGATAACAATTACACTGCATTGTTGTTGAAAG 1217
Query 1112 ACATTCAGAATTTTCATGGGAAGAGTGTCGATGATAACACGATTTCGCTGCCTTTATGTG 1171
| ||||||| |||||||||||||||||| ||||||| | |||||||||||| || ||||
Sbjct 1218 ATATTCAGAGTTTTCATGGGAAGAGTGTTGATGATAGCGTGATTTCGCTGCCATTGTGTG 1277
Query 1172 TTACTAAAGCTTGTTCCATTGTTGAAGCAGTAGCTGATCTCAACTCTATGACCAACA-AC 1230
||| |||||||||||| |||||||||||||| |||||||| ||||||||||| |||| |
Sbjct 1278 TTAGTAAAGCTTGTTCAATTGTTGAAGCAGTGGCTGATCTTAACTCTATGACGAACAGA- 1336
Query 1231 ACTTGTTTGAGCTCTGATTCGAGCCGGTTTAGATTCACATCGACCGCAAAGAAAGCGGAT 1290
||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1337 ACTTGTTTGAGGTCTGATTCGAGCCGGTTTAGATTCACATCGACGGTGAAGAAAGCCGAT 1396
Query 1291 CTTATGGAACCGAGTTTTGAGAAGTATGTGACTGTGAAGAGAGGTGGT--T-CGTTGGAT 1347
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1397 CTTATGGAACCGAGTTTTGAGAAGTATGTGACTGTGAAGAGAGGTGGTGGTTCGTTGGAG 1456
Query 1348 GAATCATCTG 1357
||||||||||
Sbjct 1457 GAATCATCTG 1466
> AT3G32092.1 | Symbols: | transposable element gene | chr3:13088116-13091973
REVERSE LENGTH=3858
Length=3858
Score = 377 bits (204), Expect = 2e-103
Identities = 313/360 (87%), Gaps = 30/360 (8%)
Strand=Plus/Minus
Query 82 CCCATTAAACCAGTGATTAAGCTTTTGGAGGAAGAAACAGAACCAAAATCTGAGAAACTG 141
||||| ||||||||||| ||| ||||||||||||| || |||| |||||||||||||||
Sbjct 1502 CCCATGGAACCAGTGATTGAGCCTTTGGAGGAAGAAGCAAAACCCAAATCTGAGAAACTG 1443
Query 142 ATTC---------AAGAAGAAGAAGTCT-TGGTGATAAAACACAGAATAAGCCATGAAGA 191
| || ||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 1442 AATCAAGAAGAAGAAGAAGAAGAAGT-TGTGGTGATAAAACACAGAAGAAGCCATGAAGA 1384
Query 192 GAGTTCCAAGAAGACTGAATCAGATAAAGATTCTCC-G-----------GT---GGCTGA 236
||| ||||||||||| |||||||||||||||||||| | || ||||||
Sbjct 1383 GAGATCCAAGAAGACAGAATCAGATAAAGATTCTCCAGTTTCTTCTCCTGTGGCGGCTGA 1324
Query 237 GAAACCGAATTCTACACCGGTCGTGAGAATCTCGAGCTGTACTAAAGAAGAAGTTGATGC 296
|||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1323 GAAATCGAATTCTACACCGCTTGTGAGAATCTCTAGCTGTACTAAAGAAGAAGTTGATGC 1264
Query 297 TATATTGATACAATGTGGGAAGCTAAGTAGAAGCAACTCTGCTGCTAAAACAAGAAGATA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TATATTGATACAATGTGGGAAGCTAAGTAGAAGCAACTCTGCTGCTAAAACAAGAAGATA 1204
Query 357 CTCTGGTTC-AAAGAGAAGTTTTGATTTTGACCAGA-ACGAGAGAATTCGCGGCGGCGAT 414
||||||||| ||| ||||| |||||||||||||| | |||||||||| ||||||||||||
Sbjct 1203 CTCTGGTTCTAAA-AGAAGCTTTGATTTTGACCA-ATACGAGAGAATCCGCGGCGGCGAT 1146
> AT1G65700.3 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr1:24434203-24436294 REVERSE LENGTH=763
Length=763
Score = 237 bits (128), Expect = 3e-61
Identities = 166/184 (90%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 1447 AAAGGTCATATAGTTCTCTGGACTGTTAACATGGCAACAAATACTGGACTTGAGGA-TCT 1505
|||| ||| ||| || || | |||| ||||||||| ||| |||||||||||| || |||
Sbjct 50 AAAGTTCAAATAATT-TCCGAACTG-TAACATGGCGGCAACTACTGGACTTGA-GACTCT 106
Query 1506 TGTCAATCAGATTATTTCGGTGATTACAAATGATGGACGCAACATTGTGGGAGTTCTAAA 1565
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 107 CGTCGATCAGATTATTTCGGTGATTACAAATGACGGACGCAACATTGTGGGAGTTCTTAA 166
Query 1566 AGGTTTTGACCAAGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCAC 1625
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 AGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCAC 226
Query 1626 TAAG 1629
|||
Sbjct 227 AAAG 230
Score = 224 bits (121), Expect = 2e-57
Identities = 137/145 (94%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 1629 GGAAGGAGTACAACAACATGTGTTGGGTTTGTACATTATCAGAGGCGACAACATAGGTGT 1688
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 359 GGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATAGGTGT 418
Query 1689 TATCGGGGAGCTGGACGAGGAGCTTGATGCTGGTCTGGATTTGTCAAAGCTGAGAGCTCA 1748
||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| ||
Sbjct 419 TATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTCGAAGCTGAGAGCCCA 478
Query 1749 TCCGTTGAAACCCGTCGTTCATTGA 1773
||||||||||||||| || ||||||
Sbjct 479 TCCGTTGAAACCCGTAGTGCATTGA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5