BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315605 Length=1773 Score E Sequences producing significant alignments: (Bits) Value AT1G65710.1 | Symbols: | unknown protein; INVOLVED IN: N-termi... 1544 0.0 AT3G32092.1 | Symbols: | transposable element gene | chr3:1308... 377 2e-103 AT1G65700.3 | Symbols: | Small nuclear ribonucleoprotein famil... 237 3e-61 > AT1G65710.1 | Symbols: | unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37010.1); Has 2241 Blast hits to 1776 proteins in 164 species: Archae - 0; Bacteria - 29; Metazoa - 1759; Fungi - 94; Plants - 93; Viruses - 17; Other Eukaryotes - 249 (source: NCBI BLink). | chr1:24436901-24438542 REVERSE LENGTH=1642 Length=1642 Score = 1544 bits (836), Expect = 0.0 Identities = 1218/1390 (88%), Gaps = 75/1390 (5%) Strand=Plus/Plus Query 1 ATGGGTTGCTGTCTCAGCAAGAAACCTTCTCCTTCTCCTCTTCCCTCTAATGGT--A-CC 57 ||||||||||||||||||||||||||||| || || |||||||||||| || | | || Sbjct 119 ATGGGTTGCTGTCTCAGCAAGAAACCTTC-CC--CTTCTCTTCCCTCTAGTGTTAAACCC 175 Query 58 TCTTGTACTGTTAAACCCTCAGATCCCATTAAACCAGTGATTAAGCTTTTGGAGGAAGAA 117 || | | | || ||| | ||||| ||||||||||| ||| ||||||||||||| Sbjct 176 TC-AG-A---TCCAA---TCA-AACCCATGGAACCAGTGATTGAGCCTTTGGAGGAAGAA 226 Query 118 ACAGAACCAAAATCTGAGAAACTGATTC---------AAGAAGAAGAAGTCT-TGGTGAT 167 || |||| |||||||||||||||| || ||||||||||||| | ||||||| Sbjct 227 GCAAAACCCAAATCTGAGAAACTGAATCAAGAAGAAGAAGAAGAAGAAGT-TGTGGTGAT 285 Query 168 AAAACACAGAATAAGCCATGAAGAGAGTTCCAAGAAGACTGAATCAGATAAAGATTCTCC 227 |||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 286 AAAACACACAAGAAGCCATGAAGAGAGATCCAAGAAGACAGAATCAGATAAAGATTCTCC 345 Query 228 -G-----------GT---GGCTGAGAAACCGAATTCTACACCGGTCGTGAGAATCTCGAG 272 | || |||||||||| |||||||||||||| | ||||||||||| || Sbjct 346 AGTTTCTTCTCCTGTGGCGGCTGAGAAATCGAATTCTACACCGCTTGTGAGAATCTCTAG 405 Query 273 CTGTACTAAAGAAGAAGTTGATGCTATATTGATACAATGTGGGAAGCTAAGTAGAAGCAA 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 CTGTACTAAAGAAGAAGTTGATGCTATATTGATACAATGTGGGAAGCTAAGTAGAAGCAA 465 Query 333 CTCTGCTGCTAAAACAAGAAGATACTCTGGTTC-AAAGAGAAGTTTTGATTTTGACCAGA 391 ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 466 CTCTGCTGCTAAAACAAGAAGATACTCTGGTTCTAAA-AGAAGCTTTGATTTTGACCAGA 524 Query 392 ACGAGAGAATTCGCGGCGGCGATACGGAGGAGGAGAGAGACGGAATGGAGCGGAATCGTC 451 |||||||||| |||||||||||| ||| |||||| ||| ||||||| |||| ||||||| Sbjct 525 ACGAGAGAATCCGCGGCGGCGATGCGGCGGAGGA-AGA--CGGAATGCAGCGAAATCGTC 581 Query 452 ACCGTGGAGTAGAGAGAGTTAATGGTTCGCCTCGTGAACGGAGAAGACGAACTCCGAGCA 511 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 582 ACCGTGGAGTAGAGAGAGTGCATGGTTCGCCTCGTGAACGGAGAAGACGAACTCCGAGTA 641 Query 512 GAGAAAGAGAACGATCGGGAAGCAGAGAAAGAGGAAATGGCGGTGGCGGTGGTGGTGGTA 571 ||||||||||| ||||||||||||||||||||||||||| ||| || || || ||||||| Sbjct 642 GAGAAAGAGAAAGATCGGGAAGCAGAGAAAGAGGAAATGTCGGCGGTGGCGGCGGTGGTA 701 Query 572 GTAGGCGAGTGAGTAGATCTCCGGCGAAACGATCAGAGGTTCCAAACGCTAATTCGTGTG 631 ||||| ||||||||||||||||||||||||| || ||| ||| |||||| ||||||||| Sbjct 702 GTAGGAGAGTGAGTAGATCTCCGGCGAAACGTTCTGAGATTCGTAACGCTGATTCGTGTG 761 Query 632 GTAGTTCGGTAAATTCGAGTAATAGTAGACCGGGAAAGTTTGTTACGATTCCGGCGACGG 691 | |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| Sbjct 762 GCAGTTCGGTAAATTCGAGTAATAATAGACCGGGAAAGTTTGTTACGATTCCTGCAACGG 821 Query 692 ATAAGAGTAACAAAGTAGAGCCGTTGGTAAAACGAATTACGGTTAAGAGAAACATCGGAG 751 ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 822 ATAAGAGTAACAATGTAGAGCCGTTAGTAAAACGGATTACGGTTAAGAGAAACATCGGAG 881 Query 752 ACGCTTGTAGAGTTGCAGCGTCTCCGAGATCAAAGTCTCCGGCAAGAGCGGGGAATAATG 811 ||||||| ||| | || ||||||||||| ||||| |||||||| |||||||||||||||| Sbjct 882 ACGCTTGCAGAATAGCGGCGTCTCCGAGGTCAAAATCTCCGGCTAGAGCGGGGAATAATG 941 Query 812 TTCCCTCGCTAAGCCGGAGCAATTCAAGAAAGGCGGAGCAATCACCGTATAGGAGGAATC 871 ||||||||||||||||||| ||||||||||||||||| ||||| || ||||| || |||| Sbjct 942 TTCCCTCGCTAAGCCGGAGTAATTCAAGAAAGGCGGAACAATCTCCCTATAGAAGAAATC 1001 Query 872 CATTAGGAGAGATTGATCAAAACTCGTCGAAAGCTGGATCTTGTAACACTAAGAAGATGA 931 |||| |||||||||||||||||| | | || | | | || ||| Sbjct 1002 CATTGGGAGAGATTGATCAAAACAC-T--AA-G----A------A-------GA---TGA 1037 Query 932 TAGAATCTGTGAAACCTAATTCAAGAACAAGTAGAGCTCCAAGCCCAAGTCGTGCCGCGG 991 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || | Sbjct 1038 TAGAATCTGTGAAACCTAATTCAAGAACAAGTAGAGGTCCAAGCCCGAGTCGTGTTGCTG 1097 Query 992 TTGTAGAACTTACAAAACCTCCTCAAGTTGTATTAAGCAGAAGCAGATCGTTAAGGAAAT 1051 ||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1098 TTGTAGAACTTACGAAAGCTCCTCAAGTTGTGTTAAGCAGAAGCAGATCGTTGAGGAAAT 1157 Query 1052 CGCGAGATTTCGATTTGGTATCAAACGAAGATAACAATTACACTGCATTGTTGTTGAAAG 1111 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1158 CTCGAGATTTCGATTTGGTATCAAACGAGGATAACAATTACACTGCATTGTTGTTGAAAG 1217 Query 1112 ACATTCAGAATTTTCATGGGAAGAGTGTCGATGATAACACGATTTCGCTGCCTTTATGTG 1171 | ||||||| |||||||||||||||||| ||||||| | |||||||||||| || |||| Sbjct 1218 ATATTCAGAGTTTTCATGGGAAGAGTGTTGATGATAGCGTGATTTCGCTGCCATTGTGTG 1277 Query 1172 TTACTAAAGCTTGTTCCATTGTTGAAGCAGTAGCTGATCTCAACTCTATGACCAACA-AC 1230 ||| |||||||||||| |||||||||||||| |||||||| ||||||||||| |||| | Sbjct 1278 TTAGTAAAGCTTGTTCAATTGTTGAAGCAGTGGCTGATCTTAACTCTATGACGAACAGA- 1336 Query 1231 ACTTGTTTGAGCTCTGATTCGAGCCGGTTTAGATTCACATCGACCGCAAAGAAAGCGGAT 1290 ||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||| Sbjct 1337 ACTTGTTTGAGGTCTGATTCGAGCCGGTTTAGATTCACATCGACGGTGAAGAAAGCCGAT 1396 Query 1291 CTTATGGAACCGAGTTTTGAGAAGTATGTGACTGTGAAGAGAGGTGGT--T-CGTTGGAT 1347 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1397 CTTATGGAACCGAGTTTTGAGAAGTATGTGACTGTGAAGAGAGGTGGTGGTTCGTTGGAG 1456 Query 1348 GAATCATCTG 1357 |||||||||| Sbjct 1457 GAATCATCTG 1466 > AT3G32092.1 | Symbols: | transposable element gene | chr3:13088116-13091973 REVERSE LENGTH=3858 Length=3858 Score = 377 bits (204), Expect = 2e-103 Identities = 313/360 (87%), Gaps = 30/360 (8%) Strand=Plus/Minus Query 82 CCCATTAAACCAGTGATTAAGCTTTTGGAGGAAGAAACAGAACCAAAATCTGAGAAACTG 141 ||||| ||||||||||| ||| ||||||||||||| || |||| ||||||||||||||| Sbjct 1502 CCCATGGAACCAGTGATTGAGCCTTTGGAGGAAGAAGCAAAACCCAAATCTGAGAAACTG 1443 Query 142 ATTC---------AAGAAGAAGAAGTCT-TGGTGATAAAACACAGAATAAGCCATGAAGA 191 | || ||||||||||||| | |||||||||||||||||| |||||||||||| Sbjct 1442 AATCAAGAAGAAGAAGAAGAAGAAGT-TGTGGTGATAAAACACAGAAGAAGCCATGAAGA 1384 Query 192 GAGTTCCAAGAAGACTGAATCAGATAAAGATTCTCC-G-----------GT---GGCTGA 236 ||| ||||||||||| |||||||||||||||||||| | || |||||| Sbjct 1383 GAGATCCAAGAAGACAGAATCAGATAAAGATTCTCCAGTTTCTTCTCCTGTGGCGGCTGA 1324 Query 237 GAAACCGAATTCTACACCGGTCGTGAGAATCTCGAGCTGTACTAAAGAAGAAGTTGATGC 296 |||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||| Sbjct 1323 GAAATCGAATTCTACACCGCTTGTGAGAATCTCTAGCTGTACTAAAGAAGAAGTTGATGC 1264 Query 297 TATATTGATACAATGTGGGAAGCTAAGTAGAAGCAACTCTGCTGCTAAAACAAGAAGATA 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1263 TATATTGATACAATGTGGGAAGCTAAGTAGAAGCAACTCTGCTGCTAAAACAAGAAGATA 1204 Query 357 CTCTGGTTC-AAAGAGAAGTTTTGATTTTGACCAGA-ACGAGAGAATTCGCGGCGGCGAT 414 ||||||||| ||| ||||| |||||||||||||| | |||||||||| |||||||||||| Sbjct 1203 CTCTGGTTCTAAA-AGAAGCTTTGATTTTGACCA-ATACGAGAGAATCCGCGGCGGCGAT 1146 > AT1G65700.3 | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:24434203-24436294 REVERSE LENGTH=763 Length=763 Score = 237 bits (128), Expect = 3e-61 Identities = 166/184 (90%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 1447 AAAGGTCATATAGTTCTCTGGACTGTTAACATGGCAACAAATACTGGACTTGAGGA-TCT 1505 |||| ||| ||| || || | |||| ||||||||| ||| |||||||||||| || ||| Sbjct 50 AAAGTTCAAATAATT-TCCGAACTG-TAACATGGCGGCAACTACTGGACTTGA-GACTCT 106 Query 1506 TGTCAATCAGATTATTTCGGTGATTACAAATGATGGACGCAACATTGTGGGAGTTCTAAA 1565 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 107 CGTCGATCAGATTATTTCGGTGATTACAAATGACGGACGCAACATTGTGGGAGTTCTTAA 166 Query 1566 AGGTTTTGACCAAGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCAC 1625 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 AGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCAC 226 Query 1626 TAAG 1629 ||| Sbjct 227 AAAG 230 Score = 224 bits (121), Expect = 2e-57 Identities = 137/145 (94%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1629 GGAAGGAGTACAACAACATGTGTTGGGTTTGTACATTATCAGAGGCGACAACATAGGTGT 1688 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 359 GGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATAGGTGT 418 Query 1689 TATCGGGGAGCTGGACGAGGAGCTTGATGCTGGTCTGGATTTGTCAAAGCTGAGAGCTCA 1748 ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| || Sbjct 419 TATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTCGAAGCTGAGAGCCCA 478 Query 1749 TCCGTTGAAACCCGTCGTTCATTGA 1773 ||||||||||||||| || |||||| Sbjct 479 TCCGTTGAAACCCGTAGTGCATTGA 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87700352115 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5