BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315612
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66490.1 | Symbols: | F-box and associated interaction doma... 592 3e-168
AT3G17490.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07
AT3G13680.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07
AT1G54550.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07
> AT1G66490.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:24809421-24810549 REVERSE LENGTH=1083
Length=1083
Score = 592 bits (320), Expect = 3e-168
Identities = 618/755 (82%), Gaps = 48/755 (6%)
Strand=Plus/Plus
Query 124 TTTCAAGTATTTCATTGGGACGGCTTATTGTTATGCGTCATCAGAGACAACAGGTGGCGG 183
||| |||| |||||||| || ||||| |||||||||||| |||||| ||| | ||||
Sbjct 277 TTTAAAGTCTTTCATTGCGAAGGCTTGTTGTTATGCGTCTTCAGAGGTAACCGATGGCCT 336
Query 184 GTGGTGTGGAACCCTTATTTGGGGGAAACTA-GGTTGATTAAACCCATAAACAAATTCCA 242
|| ||||||||||||||| |||||| ||| | ||| |||| ||||||||| | | |||||
Sbjct 337 GTAGTGTGGAACCCTTATCTGGGGGGAAC-AGGGTGGATTCAACCCATAAGCGATTTCCA 395
Query 243 CAGATA-CAAAATATTGGACATGTTTGCTTTAGGATACGATAACAACAACAAGAACCATC 301
|| ||| | || ||| |||| ||||||||| ||||||| | ||||||||||| |
Sbjct 396 CAAATATC-AAGTATCAGACAAGTTTGCTTTCGGATACG------AGAACAAGAACCA-C 447
Query 302 -TTCCTGTCTTTTTTGAAATCTACAATTTTAACTCTAATGCATGGAGGGTTCTTGATGTC 360
|| || |||| ||| |||||| || ||||||||| |||||||| |||||||||||||
Sbjct 448 TTTTTTGGATTTTATGATATCTACGATCTTAACTCTAGTGCATGGAAGGTTCTTGATGTC 507
Query 361 TATCCCCACTGTGACATAAAAAGCGGTGTATCTTTGAAGGGAAATACTTACTTTTTTGCT 420
||||| | ||||| |||||| | || || |||||||| ||||| |||||||||||||||
Sbjct 508 AATCCCGATTGTGATATAAAATGTGGCGTGTCTTTGAAAGGAAAAACTTACTTTTTTGCT 567
Query 421 CGAGAAAAAGTAAAAGGTTTGTCATCAGCTCCAAATGTTGAAGtttttttACTATGTTTT 480
|||| ||| | | || |||||||||||| ||| ||||||| | ||||||
Sbjct 568 ------AAAG--AAA---TAG-CAAAAGCTCCAAATGTCAAAGATTTTTTAGTGTGTTTT 615
Query 481 GATTTTACTGCCGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTGCACTCTTAC-GTTTG 539
||||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 616 GATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTTCACTCTTGCGGTTT- 674
Query 540 GCTTTCAGAACACGCGACTTTATCTTGTGTAAGAGATGAGCACCTCGCTGTCTTATTTCA 599
| |||||||||| | |||||||||||||||||||||||||||| | |||||||||| ||
Sbjct 675 GTTTTCAGAACATGTGACTTTATCTTGTGTAAGAGATGAGCACTTAGCTGTCTTATATCG 734
Query 600 ACGGTACAATGCAATAATGGAGATATATATTACAACTAAGATTGAGCCGAATGTGGTAT- 658
||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 735 ACGGTACAATGGAGTAATGGAGATATATATTACAACTAAGATTGAGCCGAATGAGGTATT 794
Query 659 CTTGGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCAGACAGGTTTTATGC---T- 714
|| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 795 CT-GGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCGGACAGATTTTATGGAAGTC 853
Query 715 GAG---AG--CTTCTTCATTGACGAGGAGAAAAAAGTCATTGTGGTTTTCGATTCACTCG 769
|| | |||||||||||||||||||||||||||| |||||||||| | | | |
Sbjct 854 GATCTCACTACTTCTTCATTGACGAGGAGAAAAAAGTCGCTGTGGTTTTCAAGA-A-T-G 910
Query 770 GTTCTAGA-TGGACCCA-G-ACTTCTTTCTACCGAACAACTTACATCATTGGAGAAAGT- 825
|| || |||||| | | | || || ||||| |||| ||||||| |||||| ||||
Sbjct 911 AACCT-GAATGGACC-ATGGA-TTGTTCCTACCAAACAGCTTACATTATTGGA-AAAGGA 966
Query 826 GGATATTTCAAATCTGTGAAATTTGGAGAAACTCC 860
|||||| |||||||||||||||| |||||||||||
Sbjct 967 GGATATCTCAAATCTGTGAAATTCGGAGAAACTCC 1001
Score = 87.9 bits (47), Expect = 2e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 4 TCTGATCTTCCGTTAGCTTTGGTAGAGGAGATACTCTCTAGGGTTCCATTAACATC 59
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 13 TCTGATCTTCCGGTGGCTTTGGTAGAAGAGATACTCTCTAGGGTTCCATTAACATC 68
> AT3G17490.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5984827-5985993 FORWARD LENGTH=1167
Length=1167
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50
||||||||||||||||||||||||||||||
Sbjct 27 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 56
> AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50
||||||||||||||||||||||||||||||
Sbjct 30 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 59
> AT1G54550.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20369651-20370986 FORWARD LENGTH=1336
Length=1336
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 391 TCTTTGAAGGGAAATACTTACTTTTTTGCTCGA 423
|||||||||||||||||||||||||||| ||||
Sbjct 630 TCTTTGAAGGGAAATACTTACTTTTTTGGTCGA 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5