BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315612 Length=966 Score E Sequences producing significant alignments: (Bits) Value AT1G66490.1 | Symbols: | F-box and associated interaction doma... 592 3e-168 AT3G17490.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07 AT3G13680.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07 AT1G54550.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07 > AT1G66490.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:24809421-24810549 REVERSE LENGTH=1083 Length=1083 Score = 592 bits (320), Expect = 3e-168 Identities = 618/755 (82%), Gaps = 48/755 (6%) Strand=Plus/Plus Query 124 TTTCAAGTATTTCATTGGGACGGCTTATTGTTATGCGTCATCAGAGACAACAGGTGGCGG 183 ||| |||| |||||||| || ||||| |||||||||||| |||||| ||| | |||| Sbjct 277 TTTAAAGTCTTTCATTGCGAAGGCTTGTTGTTATGCGTCTTCAGAGGTAACCGATGGCCT 336 Query 184 GTGGTGTGGAACCCTTATTTGGGGGAAACTA-GGTTGATTAAACCCATAAACAAATTCCA 242 || ||||||||||||||| |||||| ||| | ||| |||| ||||||||| | | ||||| Sbjct 337 GTAGTGTGGAACCCTTATCTGGGGGGAAC-AGGGTGGATTCAACCCATAAGCGATTTCCA 395 Query 243 CAGATA-CAAAATATTGGACATGTTTGCTTTAGGATACGATAACAACAACAAGAACCATC 301 || ||| | || ||| |||| ||||||||| ||||||| | ||||||||||| | Sbjct 396 CAAATATC-AAGTATCAGACAAGTTTGCTTTCGGATACG------AGAACAAGAACCA-C 447 Query 302 -TTCCTGTCTTTTTTGAAATCTACAATTTTAACTCTAATGCATGGAGGGTTCTTGATGTC 360 || || |||| ||| |||||| || ||||||||| |||||||| ||||||||||||| Sbjct 448 TTTTTTGGATTTTATGATATCTACGATCTTAACTCTAGTGCATGGAAGGTTCTTGATGTC 507 Query 361 TATCCCCACTGTGACATAAAAAGCGGTGTATCTTTGAAGGGAAATACTTACTTTTTTGCT 420 ||||| | ||||| |||||| | || || |||||||| ||||| ||||||||||||||| Sbjct 508 AATCCCGATTGTGATATAAAATGTGGCGTGTCTTTGAAAGGAAAAACTTACTTTTTTGCT 567 Query 421 CGAGAAAAAGTAAAAGGTTTGTCATCAGCTCCAAATGTTGAAGtttttttACTATGTTTT 480 |||| ||| | | || |||||||||||| ||| ||||||| | |||||| Sbjct 568 ------AAAG--AAA---TAG-CAAAAGCTCCAAATGTCAAAGATTTTTTAGTGTGTTTT 615 Query 481 GATTTTACTGCCGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTGCACTCTTAC-GTTTG 539 ||||||||||| |||||||||||||||||||||||||||||||| ||||||| | |||| Sbjct 616 GATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTTCACTCTTGCGGTTT- 674 Query 540 GCTTTCAGAACACGCGACTTTATCTTGTGTAAGAGATGAGCACCTCGCTGTCTTATTTCA 599 | |||||||||| | |||||||||||||||||||||||||||| | |||||||||| || Sbjct 675 GTTTTCAGAACATGTGACTTTATCTTGTGTAAGAGATGAGCACTTAGCTGTCTTATATCG 734 Query 600 ACGGTACAATGCAATAATGGAGATATATATTACAACTAAGATTGAGCCGAATGTGGTAT- 658 ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 735 ACGGTACAATGGAGTAATGGAGATATATATTACAACTAAGATTGAGCCGAATGAGGTATT 794 Query 659 CTTGGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCAGACAGGTTTTATGC---T- 714 || ||||||||||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct 795 CT-GGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCGGACAGATTTTATGGAAGTC 853 Query 715 GAG---AG--CTTCTTCATTGACGAGGAGAAAAAAGTCATTGTGGTTTTCGATTCACTCG 769 || | |||||||||||||||||||||||||||| |||||||||| | | | | Sbjct 854 GATCTCACTACTTCTTCATTGACGAGGAGAAAAAAGTCGCTGTGGTTTTCAAGA-A-T-G 910 Query 770 GTTCTAGA-TGGACCCA-G-ACTTCTTTCTACCGAACAACTTACATCATTGGAGAAAGT- 825 || || |||||| | | | || || ||||| |||| ||||||| |||||| |||| Sbjct 911 AACCT-GAATGGACC-ATGGA-TTGTTCCTACCAAACAGCTTACATTATTGGA-AAAGGA 966 Query 826 GGATATTTCAAATCTGTGAAATTTGGAGAAACTCC 860 |||||| |||||||||||||||| ||||||||||| Sbjct 967 GGATATCTCAAATCTGTGAAATTCGGAGAAACTCC 1001 Score = 87.9 bits (47), Expect = 2e-16 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 4 TCTGATCTTCCGTTAGCTTTGGTAGAGGAGATACTCTCTAGGGTTCCATTAACATC 59 |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| Sbjct 13 TCTGATCTTCCGGTGGCTTTGGTAGAAGAGATACTCTCTAGGGTTCCATTAACATC 68 > AT3G17490.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:5984827-5985993 FORWARD LENGTH=1167 Length=1167 Score = 56.5 bits (30), Expect = 5e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50 |||||||||||||||||||||||||||||| Sbjct 27 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 56 > AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:4477289-4478721 REVERSE LENGTH=1433 Length=1433 Score = 56.5 bits (30), Expect = 5e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50 |||||||||||||||||||||||||||||| Sbjct 30 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 59 > AT1G54550.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:20369651-20370986 FORWARD LENGTH=1336 Length=1336 Score = 56.5 bits (30), Expect = 5e-07 Identities = 32/33 (97%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 391 TCTTTGAAGGGAAATACTTACTTTTTTGCTCGA 423 |||||||||||||||||||||||||||| |||| Sbjct 630 TCTTTGAAGGGAAATACTTACTTTTTTGGTCGA 662 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47270332327 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5