BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315617
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67000.1 | Symbols: | Integrase-type DNA-binding superfamil... 268 2e-71
AT2G20350.1 | Symbols: | Integrase-type DNA-binding superfamil... 198 3e-50
> AT5G67000.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:26746677-26747281 REVERSE LENGTH=605
Length=605
Score = 268 bits (145), Expect = 2e-71
Identities = 221/255 (87%), Gaps = 15/255 (6%)
Strand=Plus/Plus
Query 185 GCTGCACATTACAACGGCCGCACCGAGAGATAGAGAAGGAGAAGAAATACAAAGGAGTGA 244
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 364 GCTGCACATTACAACGGCCGCACCGAGAGGTAAAGAAGGAGAAGAAATACAAAGGAGTAA 423
Query 245 GGAAAAAGCCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGTTCGAAATCAAGGA 304
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 424 GGAAAAAACCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGATCGAAATCAAGGA 483
Query 305 AGTGGCTTGGAACGTTTCTAACGGCAGAGACGGCGGCG-AGTTCTTACGATGAGGCTGCG 363
|||||||||||||||||| ||||| |||| |||||| | | ||||| |||| || | |
Sbjct 484 GGTGGCTTGGAACGTTTCTTACGGCGGAGATGGCGGCACAAT-CTTACAATGATGC-G-G 540
Query 364 CGGAGCTTGTCAGGAGAACATCAGCAAGACGTGGCAAAACGAACGGAGGAAG-AATTAAA 422
||| || | || | | |||||||||||| ||||| ||||||| ||| |||||||
Sbjct 541 CGG--CT-G--AGTAT--CG--AGCAAGACGTGGTAAAACAAACGGAG-AAGGAATTAAA 590
Query 423 CGGCGGCGGAGATGA 437
|||||| ||||||||
Sbjct 591 CGGCGGTGGAGATGA 605
Score = 147 bits (79), Expect = 1e-34
Identities = 110/123 (89%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 68 AAGAGCACGAGATCATGGTCTCTGCTCTGCAACAAGTGATATCTAACTCCAGAGCTGACG 127
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 217 AAGAGCACGAGATCATGGTCTCTGCTCTGCGACAAGTGATATCTAACTCCGGAGCTGACG 276
Query 128 -CG--TCATCATCAAACTTGATCG-CAAGCGAAG-GTCTTCCGCCTCCAGACGCTGGCCC 182
|| |||||||||||||||||| || | ||| || | ||||||||||||||||||||
Sbjct 277 ACGCGTCATCATCAAACTTGATCATCA--C-AAGCGT-T-CCGCCTCCAGACGCTGGCCC 331
Query 183 TTG 185
|||
Sbjct 332 TTG 334
> AT2G20350.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:8784769-8785396 FORWARD LENGTH=477
Length=477
Score = 198 bits (107), Expect = 3e-50
Identities = 171/200 (86%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 218 AGAAGGAGAAGAAATACAAAGGAGTGAGGAAAAAGCCATCGGGTAAATGGGCGGCGGAGA 277
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 245 AGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAACCATCAGGTAAATGGGCGGCGGAGA 304
Query 278 TATGGGATCCGAGTTCGAAA-TCAAGGA-AGTGGCTTGGAACGTTTCTAACGGCAGAGAC 335
||||||||||||||| |||| | ||||| | |||||||||||||||| ||| || ||||
Sbjct 305 TATGGGATCCGAGTTTGAAAGT-AAGGAGA-TGGCTTGGAACGTTTCCAACAGCGGAGAT 362
Query 336 GGCGGCGA-GTTCTTACGATGAGGCTGCG-CGGAGCTTGTCAGGA-GAACATCAGCAAGA 392
|||||| | | ||||| | || || ||| | ||| ||||| ||| ||| ||||||||||
Sbjct 363 GGCGGCTAAGG-CTTACAACGATGCGGCGGCTGAGTTTGTC-GGAAGAAGATCAGCAAGA 420
Query 393 CGTGGCA-AAACGAACGGAG 411
||||||| ||| ||||||||
Sbjct 421 CGTGGCACAAA-GAACGGAG 439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5