BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315619

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65845.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   407    3e-113


> AT1G65845.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 9 Blast hits to 9 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:24493174-24493798 REVERSE LENGTH=489
Length=489

 Score =  407 bits (220),  Expect = 3e-113
 Identities = 293/326 (90%), Gaps = 13/326 (4%)
 Strand=Plus/Plus

Query  1    ATGATAATGAAGaaaaa-aaCTCAAGCTTATCTTCTTCTAAGTTTAGTTCATATACTTCT  59
            ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  17   ATGATAATGAA-AAAAACAACTCAAGCGTATCTTCTTCTAAGTTTAGTTCATATACTTCT  75

Query  60   ATGTCTATCCTTTCAGATTCGTGCCATTGAGGCTATACGCCCTCTCCAAGCTGAGCCCCC  119
            ||||||||||||||||||||||||  |  |   ||  |||||||| | ||||||||| ||
Sbjct  76   ATGTCTATCCTTTCAGATTCGTGC--T--A---TA--CGCCCTCTTCTAGCTGAGCCGCC  126

Query  120  AAGTCAAATCCGAAATCCACCACCACCCTCGCCTGCATGGCCCTCTCCACCATGTGGATC  179
            ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct  127  AAGTCAAATCCTAAATCCACCACCACCCTCGCCCGTATGGCCCTCTCCACCATGTGGAAC  186

Query  180  TAATATCGGAAGTCAAGTTACTGCAATAAGAGAGAAGTCTTGTAGACAAATTCCAAGGCC  239
            ||||||||| ||||||||||| ||| || ||||||| ||||| ||||||||||| |||||
Sbjct  187  TAATATCGGGAGTCAAGTTACGGCAGTAGGAGAGAATTCTTGCAGACAAATTCCGAGGCC  246

Query  240  TCCTaaaaccaaaaagaagaaaactccaaagcctcttaaaaccaaaaagaacaaaaTTTC  299
            ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct  247  TCCTAAAACCAAAAAGAAGAAAATTCCAAAGCCTCTTAAAACCAAAAAGAAGAAAATCTC  306

Query  300  AAGGCCTCCTGCAGCTA-TTCCGTGA  324
            || ||||| |||||| | ||||||||
Sbjct  307  AAAGCCTCATGCAGC-AGTTCCGTGA  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5