BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315636

Length=1254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65985.1 | Symbols:  | Plant protein of unknown function (DU...   499    2e-140
  AT1G67150.2 | Symbols:  | Plant protein of unknown function (DU...  80.5    4e-14 


> AT1G65985.1 | Symbols:  | Plant protein of unknown function (DUF247) 
| chr1:24562553-24568530 REVERSE LENGTH=1456
Length=1456

 Score =  499 bits (270),  Expect = 2e-140
 Identities = 426/499 (85%), Gaps = 19/499 (4%)
 Strand=Plus/Plus

Query  765   GGTGTTTTCGTTGCATGTGGAGTTTAAGAAAGGTAGATTAACGATGCTGAGTTTTC-GTG  823
             |||| |||| |||||||||||||| ||||||||| | ||| |||||| ||| |||| | |
Sbjct  943   GGTG-TTTCATTGCATGTGGAGTTAAAGAAAGGTTGCTTATCGATGCCGAG-TTTCTGGG  1000

Query  824   CTAATCAAT-GGTTTGATATGGTTCTAAGAAATGTAATAGCATTTGAGCAGTGCCATGTT  882
             |||||  || ||   |||||| |||||||||||||||| ||||||||||||||||| |  
Sbjct  1001  CTAAT-GATAGGACAGATATGATTCTAAGAAATGTAATTGCATTTGAGCAGTGCCA-GCA  1058

Query  883   TCTC-TAATACCCTTTA-CTAC-CAACTACGTACATTTCTTAAATTTTCTAATTA-CTTC  938
             |  | |||||||||||| || | | ||||| |||| |||||||||   || | ||  |||
Sbjct  1059  TGGCATAATACCCTTTACCT-CGC-ACTACATACAATTCTTAAATGCCCTGA-TAGTTTC  1115

Query  939   CGATAGAGACGTCGAGGTACTCAGCGAAGAAGGGGTGGTAACAAACAATATCGGTCGGGT  998
             ||| |||||||||||| ||||||||||| ||||||||||||  |||||||| ||||||  
Sbjct  1116  CGACAGAGACGTCGAGCTACTCAGCGAAAAAGGGGTGGTAATGAACAATATGGGTCGGCC  1175

Query  999   GAGCTTGGTGGTGGACATGGTGAACAAGTTACAGGTTGGTGTGAAAGTAGGGA-ACACCT  1057
              |||||||||||||||||||||||||||||| ||||||||||| | | | ||| ||||||
Sbjct  1176  AAGCTTGGTGGTGGACATGGTGAACAAGTTAAAGGTTGGTGTGTACG-AAGGATACACCT  1234

Query  1058  CCCAATACTTCT-ACATAGCCGA-GGATCTCAGAGCTCACTGTAAATCTCGAAGAAAGAG  1115
             |||||||| | | |||||||| |  ||||||| |||||||| ||||||||||||||||||
Sbjct  1235  CCCAATAC-TATGACATAGCC-ATAGATCTCAAAGCTCACTATAAATCTCGAAGAAAGAG  1292

Query  1116  GTGTTGGGCGACTCTCAGAAAAGTCTACTTCAGCGACTTATGGACCGGAACAGCAACTTT  1175
             ||||||||| || ||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct  1293  GTGTTGGGCCACCCTCAGAAAAGTTTACTTCAGCGACTTGTGGACCGGCACAGCTACTTT  1352

Query  1176  AGCCGCAGCGTTTCTCTTGCTTTTGACTCTGGTCGGAACGGTTGCTTCTGTCATCCAAGC  1235
             |||||| | | |||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct  1353  AGCCGCCGTGCTTCTCTTGCTTTTGACTCTGGTTGGGACGGTGGCTTCTGTCATCCAAGC  1412

Query  1236  TTACAAAAGCTTCAAGTAA  1254
             |||| ||||||||||||||
Sbjct  1413  TTACGAAAGCTTCAAGTAA  1431


> AT1G67150.2 | Symbols:  | Plant protein of unknown function (DUF247) 
| chr1:25122475-25124695 FORWARD LENGTH=1440
Length=1440

 Score = 80.5 bits (43),  Expect = 4e-14
 Identities = 276/385 (72%), Gaps = 30/385 (8%)
 Strand=Plus/Plus

Query  809   TGCTGAGTTTTCGTGCTAATCAATGGTT-TGATATGGTTCTAAGAAATGTAATAGCATTT  867
             ||| |||||||| |||  || |||  || | ||||  | || |||||||| || |||| |
Sbjct  913   TGCCGAGTTTTCCTGCCGATGAAT-CTTCTAATATCATCCTTAGAAATGTCATCGCATAT  971

Query  868   GAGCAGTGCCATGTTTCTCT-AATA-CCCTTTACTACCAACTACGTACATTTCTTAAATT  925
             ||||| |||||||  || || || |  |||||||||| || ||| || ||||| | ||||
Sbjct  972   GAGCAATGCCATG-ATC-CTGAAAATGCCTTTACTACAAATTACATAAATTTCATGAATT  1029

Query  926   TTCTAATTACTTCCGATAG-AGACGTCGAGGTACTCAGC-GAAGAAGGGGTGGTAACAAA  983
             | || ||||| |||||| | |||||| |   |||||| |   || ||| ||| |||||||
Sbjct  1030  TCCTTATTACCTCCGAT-GAAGACGTGGCTATACTCA-CTTCAGCAGGAGTGCTAACAAA  1087

Query  984   CAATATCGGTCGGGT-GAGCTTGGTGGTGGACATGGTGAACAAGTTACAGGT-T-GGTGT  1040
             |  | | || | |||  ||| ||||  || | |||||||| || ||  || | | || ||
Sbjct  1088  CGGTGTGGGGC-GGTCAAGCATGGTACTGAAGATGGTGAATAACTT--AGCTATAGGAGT  1144

Query  1041  GAAAG-TAGGGAA-CACCTCCCAATACT-TCTACATAGCCGAGGATCTC-AGAGCTCACT  1096
             |   | ||  ||| ||    |||||| |  | |||| |  ||| | ||| | |  |||| 
Sbjct  1145  G-TTGCTATCGAATCA-GAGCCAATA-TCACGACATTGTTGAGAAACTCAACA-TTCACC  1200

Query  1097  GTAAATCTCG-AAGAAAGAGGTGT-TGGGCGACTCTCAGAAAAGTCTACTTCAGCGACTT  1154
              ||  ||||| | |||| |||  | |||||||  || |||||||||||||||||||||||
Sbjct  1201  ATAGTTCTCGTAGGAAA-AGG-ATATGGGCGAAACTAAGAAAAGTCTACTTCAGCGACTT  1258

Query  1155  ATGGACCGG-AACAGCAACTTTAGC  1178
             |||||| |  |||||| || |||||
Sbjct  1259  ATGGAC-GACAACAGCTACGTTAGC  1282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61646269260


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5