BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315648

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35614.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   126    1e-28


> AT1G35614.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G35500.1); 
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:13148592-13149559 
FORWARD LENGTH=342
Length=342

 Score =  126 bits (68),  Expect = 1e-28
 Identities = 85/93 (91%), Gaps = 2/93 (2%)
 Strand=Plus/Plus

Query  103  ACCCAGAAGA-AGGAACCGCCGTGCGCCGTCGACGACTCCAACGGACATGGCGCATCTGA  161
            ||||| |||| | || ||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct  172  ACCCAAAAGATA-GATCCGCCGTGCGCCGTCTACGTCTCCACCGGACATGGCGCATCTGA  230

Query  162  CGGTCCAAGAGGGAGTTCTCCTGCCATCAACGA  194
            ||||||||||| |||||||||||||||||||||
Sbjct  231  CGGTCCAAGAGTGAGTTCTCCTGCCATCAACGA  263



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5