BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315683
Length=390
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66534.1 | Symbols: | unknown pseudogene | chr1:24823254-24... 340 4e-93
AT1G09245.1 | Symbols: | Plant self-incompatibility protein S1... 318 2e-86
AT1G24657.1 | Symbols: | unknown pseudogene | chr1:8737952-873... 252 2e-66
AT1G24686.1 | Symbols: | Pseudogene of AT1G09245 | chr1:874050... 250 8e-66
> AT1G66534.1 | Symbols: | unknown pseudogene | chr1:24823254-24823667
FORWARD LENGTH=414
Length=414
Score = 340 bits (184), Expect = 4e-93
Identities = 273/316 (86%), Gaps = 6/316 (2%)
Strand=Plus/Plus
Query 77 CTTGGTCCCAGTTTGGTTCTTCAGTACCATTGTCATTCAAGAGACAACAATCTAAATGTC 136
||||||||| |||||||||| || || |||||||| ||||||||||||||| ||||||
Sbjct 103 CTTGGTCCCGGTTTGGTTCTACAATAGCATTGTCACTCAAGAGACAACAATTTAAATG-- 160
Query 137 TCCCAAATTTACAATTCAATGAAACAAAGGTAA-TCAACTTCGGAGACAAGTTAGGGAGA 195
|| ||||||||| |||||||||| ||| || || |||| ||| ||| |||| | |
Sbjct 161 TCAAAAATTTACAGTTCAATGAAATAAAAAAAATTC-GTTTCGCAGATAAGATAGGAAAA 219
Query 196 AGGACAAGATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATTCAGAATTT 255
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 220 AGGACAAGATGGACTTGTGTTTTGAAACACGACTTATACATGCGATATTATTCAGAATTT 279
Query 256 ATAGGATACCGAATGGGCAACGTTCGTCGATGTGGT-CATACACGTCATTGGATTGCCAG 314
|| |||||| |||||| ||| ||||||||||||||| | | ||||||| |||||||||||
Sbjct 280 ATTGGATACAGAATGGCCAATGTTCGTCGATGTGGTGCTT-CACGTCAGTGGATTGCCAG 338
Query 315 AAAAGATGGAATTTATCTTACAAGAAATCAAAATCCGCCACCACTGTTCCATCATGGATG 374
||||| ||||||||| |||||||||||||||||||| |||||| ||||||| ||| ||
Sbjct 339 AAAAGCTGGAATTTACCTTACAAGAAATCAAAATCCACCACCAGTGTTCCAACATTTTTG 398
Query 375 GAATAAAACTAATTAA 390
|||||||||||| |||
Sbjct 399 GAATAAAACTAAATAA 414
> AT1G09245.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:2986939-2987393 REVERSE LENGTH=455
Length=455
Score = 318 bits (172), Expect = 2e-86
Identities = 274/321 (85%), Gaps = 16/321 (5%)
Strand=Plus/Plus
Query 77 CTTGGTCCCAGTTTGGTTCTTCAGTACCATTGTCATTCAAGAGA-CAACAATCTAAATGT 135
||||||||| |||| |||||||| |||||||||||||||||||| | |||||||| | |
Sbjct 135 CTTGGTCCCGGTTTAGTTCTTCAATACCATTGTCATTCAAGAGATC-ACAATCTAGACG- 192
Query 136 CTCCCAAATTTACAATTCAATGAA-ACAAAGGTAATCAAC-TTCGGAGACAAGTTAGGGA 193
|| |||||||||||||||||||| | ||| | |||| | ||||||||||||||||| |
Sbjct 193 -TCGCAAATTTACAATTCAATGAATATAAA-GAAATC-GCATTCGGAGACAAGTTAGGAA 249
Query 194 GAAGGACAAGATGGACTTGTC-TTTTGAAACACGGCTTATACATGCGATATTATTCAGAA 252
||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 250 AAAGAACAAGATGGAGTTG-CATTTTGAAACACGGCTTATACATGCGATATTATTCAGAA 308
Query 253 TTTATAGGATACC-GAATGGGCAACGTTCGTCGATGTGGT-C-ATACACGTCATTGGATT 309
||||||| |||| || ||| ||||||||||||||| ||| | || | ||| ||||||||
Sbjct 309 TTTATAGCATACATGA-TGGCCAACGTTCGTCGATGCGGTGCTAT-C-CGTAATTGGATT 365
Query 310 GCCAGAAAAGATGGAATTTATCTTACAAGAAATCAAAATCCGCCACCACTGTTCCATCAT 369
|| ||||||||| ||||||| |||| ||||||| |||||||||| || |||||| | ||
Sbjct 366 GCTAGAAAAGATAGAATTTACCTTATAAGAAATGTAAATCCGCCAGCAGTGTTCCGTTAT 425
Query 370 GGATGGAATAAAACTAATTAA 390
||||||||||||||| |||
Sbjct 426 ACATGGAATAAAACTAAGTAA 446
Score = 119 bits (64), Expect = 2e-26
Identities = 72/76 (95%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1 ATGAATCGTTTTCTAATTTTTATGTTTGTTGTTGCGACATGTTTTGGATTGAATGTAGCA 60
|||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 27 ATGAATCGTTTTATAATTTTTATGTTTGTTGTTGTAACATATTTTGGATTGAATGTAGCA 86
Query 61 TTTGACATGTTCCCAT 76
||||||||||||||||
Sbjct 87 TTTGACATGTTCCCAT 102
> AT1G24657.1 | Symbols: | unknown pseudogene | chr1:8737952-8738365
REVERSE LENGTH=414
Length=414
Score = 252 bits (136), Expect = 2e-66
Identities = 258/317 (81%), Gaps = 8/317 (3%)
Strand=Plus/Plus
Query 77 CTTGGTCCCAGTTTGGTTCTTCAGTACCATTGTCATTCAAGAGACAACAATCTAAATGTC 136
||||||||| |||||||||| ||||| |||||||||||||||||| |||||||| | |
Sbjct 103 CTTGGTCCCGGTTTGGTTCTCCAGTATCATTGTCATTCAAGAGACGACAATCTAGACG-- 160
Query 137 TCCCAAATTTACAATTCAATGAAACAAAGGTAATCAACTTCGGAGACAAGTTAGGGAGAA 196
| |||||||| |||| || |||| ||| |||| |||||||||||| |||| ||||
Sbjct 161 TAGCAAATTTATAATTTAAGGAAATAAAACAAATCCGTTTCGGAGACAAGCTAGGAAGAA 220
Query 197 GGACAAGATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATTCAGAATTTA 256
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 221 GAACAAGATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATAAAGAATTCA 280
Query 257 TAGGATACCGAATGGGCAACGTTCGTC-GATGTGGT-CATACA-CGTCATTGGATTGCCA 313
||| ||| || |||||| || | | |||||||| | | | |||| |||| ||| |
Sbjct 281 TAGCATATAGAGCAGGCAACATT-GACCGATGTGGTGC-T-CTGCGTCGTTGGGTTGTTA 337
Query 314 GAAAAGATGGAATTTATCTTACAAGAAATCAAAATCCGCCACCACTGTTCCATCATGGAT 373
|||| ||||||||||| ||| || ||| |||||| | |||| ||||||||||| ||
Sbjct 338 GAAATGATGGAATTTACCTTGTGAGGGATCGAAATCCTCAACCAAAGTTCCATCATGCAT 397
Query 374 GGAATAAAACTAATTAA 390
||||||||||||| |||
Sbjct 398 GGAATAAAACTAAGTAA 414
> AT1G24686.1 | Symbols: | Pseudogene of AT1G09245 | chr1:8740506-8740919
REVERSE LENGTH=414
Length=414
Score = 250 bits (135), Expect = 8e-66
Identities = 262/322 (81%), Gaps = 14/322 (4%)
Strand=Plus/Plus
Query 75 ATCTTGGTCCCAGTTTGGTTCTTC-AGTACCATTGTCATTCAAGAGACAACAATCTAAAT 133
||||||||||| ||||||||| || |||| ||| ||||||||| |||| ||||| || |
Sbjct 101 ATCTTGGTCCCGGTTTGGTTC-TCTAGTATCATCGTCATTCAAAAGACGACAATTTAGAC 159
Query 134 GTCTCCCAAATTTACAATTCAATGAAAC-AAAGGTAATCAACTTCGGAGACAAGTTAGGG 192
| || |||||||||||||||| | ||| ||| |||| |||||||||| ||| ||
Sbjct 160 G--TCGCAAATTTACAATTCAA-GGAACTAAAACAAATCCGTTTCGGAGACATGTTTGGA 216
Query 193 AGAAGGACAAGATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATTCAGAA 252
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 217 AGAAGGACAAGATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATAAAGAT 276
Query 253 TTTATAGGATACCGAATGGGCAACGTTCG-TCGATGTGGT-CATAC-ACGTCATTGGATT 309
||| ||| ||| || | |||| || | |||||||| | | | | ||||| || ||||
Sbjct 277 TTTGTAGCATATAGAGCAGCCAACATT-GATCGATGTGATGC-T-CTACGTCGTTAGATT 333
Query 310 GCCAGAAAAGATGGAATTTATCTTACAAGAAATCA-AAATCCGCCACCACTGTTCCATCA 368
|| ||||| ||||||||||| ||| |||||| | |||||| | |||| |||||||||
Sbjct 334 GCTAGAAATGATGGAATTTACCTTGTGAGAAAT-AGAAATCCTCAACCAAAGTTCCATCA 392
Query 369 TGGATGGAATAAAACTAATTAA 390
|| ||||||||||||||| |||
Sbjct 393 TGCATGGAATAAAACTAAGTAA 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18397996134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5