BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315690
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17710.1 | Symbols: | F-box and associated interaction doma... 507 1e-142
AT2G17310.1 | Symbols: SON1 | F-box and associated interaction ... 198 8e-50
> AT3G17710.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6055548-6056778 FORWARD LENGTH=1231
Length=1231
Score = 507 bits (274), Expect = 1e-142
Identities = 589/733 (80%), Gaps = 54/733 (7%)
Strand=Plus/Plus
Query 350 GGTTT-CATTTTTGCGGTGTAGGATACGATAATAGTAGACCCGAAAAGGGTTACAAGATC 408
||||| | ||||||||||||||||||||||| | ||| |||||| ||| |||||||||||
Sbjct 437 GGTTTCCGTTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATC 496
Query 409 TTGGGGTATTTTGATTGT-CTTCGTAGAGTCAGTGACACT-TACGAGGTAGGTTACCGTA 466
|||||||||||| ||||| | |||||| |||| ||| || | | ||| |||||| | ||
Sbjct 497 TTGGGGTATTTTAATTGTAC-GCGTAGACTCAGCGACTCTCT-CCAGGAAGGTTA-C-TA 552
Query 467 --GGGTTGCGATTTACGAATGTTCGTCTCATGCATTGAAGTTTATTG--A----TGGCCC 518
| |||||| ||||| ||| | || || || || || ||||||| | | |||
Sbjct 553 CCAAGCTGCGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCC 612
Query 519 TTTCAAGCAGTGGCCCATGATGGTA-CCTTTGTCCTTGAATGGGAATCTCTATTGGCTTA 577
|||||| | |||||||| | || | ||||||||| |||| |||||||| |||||||||
Sbjct 613 TTTCAACCTGTGGCCCAACAAGG-ATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTG 671
Query 578 CTCAT-A--ATCCTGAGACTCATGAGCATTTCATCCG-AAGCTTTGATTTCTCGAGT-GA 632
||||| | | |||||||||| |||| ||||||| || || |||||||||||| | | ||
Sbjct 672 CTCATAACCACCCTGAGACTCTTGAGTATTTCAT-CGAAACCTTTGATTTCTCCA-TGGA 729
Query 633 AATATTCAAACCCTTTTGTCTCCTACCGTGTCAGAAGAACCGTTCTTCG-GATAG-ACTT 690
|| ||||||||||||||||| || ||||||| |||| | | || | | || | ||||
Sbjct 730 GATTTTCAAACCCTTTTGTCTACTGCCGTGTCGGAAGGA-CTTTGGTAGCAAT-GAACTT 787
Query 691 ATCCTCGCGGTTTATAAAGG-AGATCGGTTTTCGTTGTTAAAGCAATG-TTATGTAACAG 748
|||| ||||||| | |||| |||||||||||| |||||||||||||| || | ||||
Sbjct 788 GTCCTGGCGGTTT-TTAAGGAAGATCGGTTTTCATTGTTAAAGCAATGCTT-CGAAACA- 844
Query 749 A-GACGATTGATATTTGGGTAACGAAGAAGAATATTGAT-G-GA-GAGGAAGTGGTGTGG 804
| || |||||| ||||||||||| |||| ||| |||||| | || |||||||||||||||
Sbjct 845 ACGAAGATTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGG 904
Query 805 ATAAACTTGATGACTTTTCCAAGAACTAACTTGCCTAAGT-TAGTTAATAAGAT-TTGTG 862
||||| || ||||| || || | ||| ||||||||||| | ||| | || | | ||||
Sbjct 905 ATAAAGTTTATGACATTGCCGACAACCAACTTGCCTAA-TCTAGATGAT-ACTTATTGTT 962
Query 863 GCATTAGTTACTTCATCTTTGACAAGACCCTAATCATGTGTTGTGGCGACGGT-C--AAC 919
||| ||||||||||||||||||||||||| ||||||||||||||||||| | | |||
Sbjct 963 GCAGTAGTTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGA--TTACAAAAC 1020
Query 920 TTGGAGCGGCTTGCATCTACATATTGAGGGGAGATATGTTCAGGAAGATTCATAT-AGAT 978
|||||| |||||||||| || |||||||||||||||||| ||||||||| || | ||
Sbjct 1021 -TGGAGCTACTTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-AT 1078
Query 979 T-TAGGGATTATTCGGTTTTCTCACTGTGCT-TATCTTCCAAATTTGATCTCGGTTCCTT 1036
| | |||||| ||| ||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1079 TCT-GGGATTTTTCAGTTTTCTTACTGTG-TCTATCTTCCAAATTTGATCTCGGTTCCTT 1136
Query 1037 TAGAATTCATATC 1049
| |||| || |||
Sbjct 1137 TTGAAT-CACATC 1148
Score = 316 bits (171), Expect = 2e-85
Identities = 292/349 (84%), Gaps = 13/349 (4%)
Strand=Plus/Plus
Query 13 GTGAAGCTACCGAGTGATTTGGAAGAAGATATTCTCTCTCGTCTTCCACCTCGATCTCTT 72
|||||| | ||| | |||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct 59 GTGAAGTTGCCGTGGGATTTGGAGGAAGAGATACTGTCTCGGCTTCCACCTCGATCTCTT 118
Query 73 ATTCGGTTCAAGACCGTATGTAAACGTTGGAACGCTCTTTTCAACGACAAGTGGTTCCTC 132
||||||||| |||||||||||||| ||||||| |||||||| ||||||| |||| ||
Sbjct 119 GTTCGGTTCAGGACCGTATGTAAACACTGGAACGGTCTTTTCAGCGACAAGAGGTTTGTC 178
Query 133 AACAACCACTTGGTTCGTGCCCGTCCACAATTCATTTTCATAACCGAATCCAAG-AG-T- 189
|| || |||||||| ||||||||||| |||||||| ||| | |||||||| ||| || |
Sbjct 179 AAAAAGCACTTGGTCCGTGCCCGTCCCCAATTCATCTTCCTTACCGAATCGAAGAAGATG 238
Query 190 TACTCGATAGATATCGATCTCTGCGGAACGATAGAGGTACGTGAGTTAGCCGCT--GATT 247
||||||||||| |||||||| | |||||||||||||| |||||| || || || ||||
Sbjct 239 TACTCGATAGAGATCGATCTGGGTGGAACGATAGAGGTGCGTGAGGTA-CC-CTACGATT 296
Query 248 TTCCTTGTCATG-CTATAG-ATTTG-ATGCATACCACCATCATGGCTTGCGATGAGTTCT 304
||| |||||| | |||| | | | || ||| || |||||||||||||||| ||| |
Sbjct 297 TTCATTGTCA-GCCTAT-GAAGAAGAAT-TTTACAACTATCATGGCTTGCGATGGGTTAT 353
Query 305 TGTTTCGTGACTTTTGGAAGCAAGGTGTTGCGGTTTGGAATCCGTGGTT 353
|||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 354 TGTTTCGTGATTTTTGGAAACAAGGTGTTGCGGTTTGGAATCCGTGGTT 402
> AT2G17310.1 | Symbols: SON1 | F-box and associated interaction
domains-containing protein | chr2:7531194-7532412 FORWARD
LENGTH=1219
Length=1219
Score = 198 bits (107), Expect = 8e-50
Identities = 396/526 (75%), Gaps = 58/526 (11%)
Strand=Plus/Plus
Query 548 TGTCCTTGAATGGGAATCTCTATTGGCTT-ACT-CA-TAATCCTGAGACTCATGAGCATT 604
|||| || ||||| |||||||||||| || | | |||| ||||| | ||||| | |
Sbjct 617 TGTCATTAAATGGAAATCTCTATTGGTTTGGTTGTAGTAATTATGAGAATGATGAGTACT 676
Query 605 TCATCCGAAGCTTTGATTTCTCGA-GTGA-AATATTCAAACCCTTTTGTCTCCTACCGTG 662
|||||||| |||||||||||||| | || || |||||||| ||||||||||| |||||
Sbjct 677 ACATCCGAATCTTTGATTTCTCGACG-GAGGAT-TTCAAACCTTTTTGTCTCCTTCCGTG 734
Query 663 TCAGAA-GAACCGTTCTTCGGATAG-ACTTATCCTCGCGGTTTATAAAGGAGATCGGTTT 720
||| || || || | | | ||| | |||| |||||||||||||||| ||||||||||||
Sbjct 735 TCA-AATGAGCCATAGTACTGAT-GAACTTGTCCTCGCGGTTTATAAGGGAGATCGGTTT 792
Query 721 TCGTTGTTAAAGCAATGTTA-TGTAACA-GAGACGATTGATATTTGGGTAACGAA-GA-A 776
||||||||||||||||| | ||||||| | || ||||| | ||||||||||| || |
Sbjct 793 TCGTTGTTAAAGCAATGC-AGTGTAACAAGGGA-GATTGGGGTATGGGTAACGAAAGAGA 850
Query 777 GAAT-A-T--TGA---TGG-A--GA-GGA-AGTG-GTG---TGGATAAACTTGATGACTT 820
| || | | ||| ||| | | ||| || | ||| ||| |||| |||||||| |
Sbjct 851 GGATTAGTAATGACAATGGGAACGGTGGAGAGGGCGTGGAGTGGTTAAAGTTGATGACCT 910
Query 821 T-TCCAAGAAC-TAACTTGCCTAAGTTAGTTAATAAGATTTGTGGCATTAGTTACTTCAT 878
| || || ||| ||||||||| |||||| || | | | | | |||||||||||||
Sbjct 911 TGTC-AA-AACCTAACTTGCCAAAGTTA-TT--TG-G-TACG-G---TTAGTTACTTCAT 959
Query 879 CTTTGACAAGACCCTA-ATCATGTGTTGTGGCGACGGTCAA-CTTGGAGCGGCTTGCATC 936
|| || |||||| || | ||||||| |||||||| | || || | | ||||||||||
Sbjct 960 CTATGGGAAGACCTTATA-CATGTGTAATGGCGACGATGAAACT-GCATTGGCTTGCATC 1017
Query 937 TACATAT-TGAGGGGAGATATGTTCAGGAAGATTCATATAGATT-TAGGGATTATTCGGT 994
|| || | |||||| |||| ||| || |||| |||| |||| || | || | |||| |
Sbjct 1018 TATAT-TGTGAGGGAAGATGTGTGCAAGAAGTTTCAAATAGGTTCT-GGAAATATTAACT 1075
Query 995 TTTC-TCACTGTGCTTAT-CTTCCAAATTTGATCTCGGTTCCTTTA 1038
| | |||||||| |||| | |||| |||| ||||| ||||||||
Sbjct 1076 GT-CGTCACTGTGTTTATACACCCAA-TTTGCTCTCGCTTCCTTTA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5