BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315701
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66740.1 | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like hist... 848 0.0
> AT1G66740.1 | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like histone
chaperone | chr1:24892340-24893766 FORWARD LENGTH=1055
Length=1055
Score = 848 bits (459), Expect = 0.0
Identities = 554/597 (93%), Gaps = 18/597 (3%)
Strand=Plus/Plus
Query 1 ATGAGTGCAATTAACATCACCAACGTCGCTGTCTTCG-ATAATCCTGCTCCTTTTGTTAG 59
||||||||||| || ||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 247 ATGAGTGCAATCAAAATCACCAACGTCGCTGTATT-GCATAATCCTGCTCCTTTTGTTAG 305
Query 60 CCCATTTCAGTTCGAGATTTCTTACGAGTGTTTGAATTCTCTCAAAGACGATTTGGAATG 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CCCTTTTCAGTTCGAGATTTCTTACGAGTGTTTGAATTCTCTCAAAGACGATTTGGAATG 365
Query 120 GAAACTTATCTATGTAGGCTCAGCAGAAGATGAGACTTATGATCAACTTCTTGAGAGTGT 179
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 366 GAAGCTTATCTATGTAGGCTCAGCAGAAGATGAGACTTATGATCAACTTCTAGAGAGTGT 425
Query 180 GCTTGTAGGGCCTGTTAATGTTGGCAACTACCGCTTTGTATTGCAGGCTGATCCTCCGGA 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 426 GCTTGTAGGGCCTGTTAATGTTGGCAACTACCGCTTTGTATTTCAGGCTGATCCTCCGGA 485
Query 240 TCCATCAAAGATTCGAG-AGGAAGACATCATTGGTGTCACTGTGCTATTGTTGACATGTT 298
|||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 486 TCCATCAAAGATTC-AGGAGGAAGACATCATCGGTGTTACTGTGCTATTGTTGACATGTT 544
Query 299 CTTACATGGGTCAAGAGTTCTTTAGAGTTGGATATTACGTGAACAATGACTACGAGGATG 358
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 545 CTTACATGGGTCAAGAGTTCTTGAGAGTTGGATATTACGTGAACAATGATTATGAGGATG 604
Query 359 AGCAACTCAAGGAAGAGCCACCAACTAAGGTTTTGATCGATAAAGTTCAGAGGAACATAC 418
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 605 AGCAACTCAAGGAAGAGCCTCCAACTAAGGTTTTGATTGATAAAGTTCAGAGGAACATAC 664
Query 419 TTTCCGACAAACCGAGAGTTACTAAATTCCCTATAAATTTTAATCCAGAAGAAGAGGAGA 478
||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||| |||
Sbjct 665 TTTCCGACAAACCTAGAGTTACTAAATTTCCTATAGATTTTCATCCAGAAGAAGAGCAGA 724
Query 479 CTGCTGCTCCT-CC--TA-TC--GAAGCA-TCTGATGAACAACAACCTAATGTCAATGGT 531
|||||||| || || | || ||| || ||||||||||||||||||||||||||||||
Sbjct 725 CTGCTGCTACTGCCGCTCCTCCTGAA-CAATCTGATGAACAACAACCTAATGTCAATGGT 783
Query 532 GAAGCTCAGGTTTTGCCTGATCAGCCAGAA-AATCCAGAACACCA-AG-AATCATGA 585
|||||||||||||| ||||||||| ||| | || ||| || ||| || ||||||||
Sbjct 784 GAAGCTCAGGTTTTACCTGATCAGTCAGTAGAA-CCA-AA-ACCTGAGGAATCATGA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5