BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315717
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66940.1 | Symbols: | protein kinase-related | chr1:2497302... 1380 0.0
> AT1G66940.1 | Symbols: | protein kinase-related | chr1:24973028-24974791
REVERSE LENGTH=1279
Length=1279
Score = 1380 bits (747), Expect = 0.0
Identities = 882/946 (93%), Gaps = 14/946 (1%)
Strand=Plus/Plus
Query 1 ATGTACCATCTTCCCACTTCTTGTCTAGTCATATTCTTCCTCCTCTCTTTATTTCACCCT 60
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 108 ATGTATCATCTTCCCACTTCTTGTCTAGTTATATTCTTCCTCCTCTCCTTATTTCACCCT 167
Query 61 CTTCCTTGTGATTCAAGTAATCAAGGACTTGGCTGGTGTGAGACTTTGTTTCAGTGTGGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 168 CTTCCTTGTGATTCAAGTAATCAAGGACTTGGCTGGTGTGAGACTTTGTTTCAGTGCGGA 227
Query 121 AACATCACCGCTGGTTTTCCCTTCTCGGGAGGGAATCGTCACAAAGATTGCGGGCATCCA 180
||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct 228 AACATCACCGCTGGTTTCCCCTTCTCGGGTGGGAATCGTCATAAAGAATGCGGTCATCCA 287
Query 181 TCGCTGGAGCTTCACTGCAACAAAAACTACATCACCTCTCTATTCATCTCAAACCAAAAA 240
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 288 TCGCTGGAGCTTCACTGCAACAAAAACAACATCACCTCTTTATTCATCTCAAACCAAAAG 347
Query 241 TACTCTGTTCTCCATATAGATCAAATATCTAACACTCTTACACTTACCAAACAAG-ACCT 299
||||||||||||| ||||||||||| ||||||||||||||||||| |||||| || ||||
Sbjct 348 TACTCTGTTCTCCGTATAGATCAAACATCTAACACTCTTACACTTGCCAAAC-AGAACCT 406
Query 300 TCTAGGTTCTTTTTGCTCCTCTGTATTCACCAACACAACCTTGCCTCCGGAAACTTTCGA 359
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 407 TCTAGGTTCTTTTTGCTCCTCTGTATTCACAAACACAACCTTGCCTCCCGAAACTTTCGA 466
Query 360 GCTTCCACCGACCTATAAGAGCGTCACCATATTCTACCAATGCTCCTCTTTGCTTCCTAA 419
|||| ||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 467 GCTTTCACGGACCTACAAGAGCGTCACTATATTCTACCAATGCTCCTCTGTGCTTCCTAA 526
Query 420 CCTTTCTAGCTATACATGTCCCGGGATAGGTCCCATCGCAGTGTCTGAAAACCCTGAAAA 479
||||||||||||||||||||| | ||||||||||||| |||||||||||| |||||||||
Sbjct 527 CCTTTCTAGCTATACATGTCCTGAGATAGGTCCCATCTCAGTGTCTGAAAGCCCTGAAAA 586
Query 480 ACATCCTGAGAGCTGCCGTTCCAGTTTCACCGTGAAGGTTCCTACGAGTTTCGATACAAA 539
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 587 ATATCCTGAGAGCTGTCGTTCCAGTTTCACCGTGAAGGTTCCCACGAGTTTCGATACAAA 646
Query 540 AGAGAAAGAGTTGAATGTGACCAATTTGGAAAGTGTTTTAAGAAAAGGATTTGAGGTGAA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGAGAAAGAGTTGAATGTGACCAATTTGGAAAGTGTTTTAAGAAAAGGATTTGAGGTGAC 706
Query 600 GGTGGTGATCAATGAGAATACATGTCAGGAATGTTTATCCTCTCTTGGAAGATGTCATGG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GGTGGTGATCAATGAGAATACATGTCAGGAATGTTTATCCTCTCTTGGAAGATGTCATGT 766
Query 660 CTTCACCGAAAACTTAACACCAGGA-T-----GTCGTCCACCAAGTGATTCTGAGGGTTC 713
||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 767 CTTCAACGAAAACTTAACACCAGGAGTTAAATGTCGTCCACCAAGTGACTCTGAGGGTTC 826
Query 714 TTGTGGATATAATCAGACCTCAAGTACGTTCGTATGCTATTGTAAAGACCCGTATAGCCT 773
||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||
Sbjct 827 TTGTGGATATAATCAGACCTCAAGTACGTTCCTCTGCTATTGTAAGGATCCGTATAGCCT 886
Query 774 ATCATGCAGTTCTGGCAAATCTTTTGTTGGATGGATAATAGGTGGTGTATTGATCTTGAT 833
|||||||||||| ||||||||| | || ||||||||||||||||||| |||||||||||
Sbjct 887 ATCATGCAGTTCGGGCAAATCTAATATTAGATGGATAATAGGTGGTGTGTTGATCTTGAT 946
Query 834 TCTCATAGG-T--G-T-T-ATTGTTTCCTTGGTGTTTCTTTGCCGATGTTGTCGAGCCAA 887
||||||| | | | | ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 947 ACTCATAGTATCAGGTATTATTGTTTCCTTGGTGTTTCTTTGCCTATGTTGCCGAGCCAA 1006
Query 888 GATTTTGAGAAAGaaaaaaaCATCAGATGCTCTTGAAGTCCCTCCT 933
|||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 1007 GATTGTCAGAAAGAAAAAATCATCAGATGCTCTTGAAGTCCCTCCT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5