BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315734
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67150.2 | Symbols: | Plant protein of unknown function (DU... 1901 0.0
> AT1G67150.2 | Symbols: | Plant protein of unknown function (DUF247)
| chr1:25122475-25124695 FORWARD LENGTH=1440
Length=1440
Score = 1901 bits (1029), Expect = 0.0
Identities = 1173/1243 (94%), Gaps = 8/1243 (1%)
Strand=Plus/Plus
Query 1 ATGGGATCTCAAGAACCATGCATTTACAAAGTGCCAAGCCAATTGCGTGAAGTGAAACCA 60
|||||||||||||| || || || |||| |||||||||||| |||||||||||||| |||
Sbjct 114 ATGGGATCTCAAGACCCTTGTATATACAGAGTGCCAAGCCAGTTGCGTGAAGTGAATCCA 173
Query 61 GAAGCCTATAGACCTCGGATGCTTCTCATCGGCCCTCTTACTCATTCCGCGAAACCTAAA 120
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 174 GAAGCTTATAGACCTCGGATGCTTCTCATCGGCCCTCTTACTCATTCCAAGAAACCTAAA 233
Query 121 GCTCATACGGATTCAAGATGCTTGATTAGGTATCTAGAATATAAGATTATGGAGGACCAA 180
| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 234 GTTCATACGGATTCAAGATGCTTTATTAGGTATCTAGAATATAAGATGATGGAGGACCAA 293
Query 181 AAGGTGTTGTACAAAGCCGCTTTCACCAAAAGGCTAGATACTGATATTGCAATTCTTGAG 240
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 294 AAGGTGTTGTACAAAGACGCTTTCACCAAAAGGCTAGATACTGATATTGCTATTCTTGAG 353
Query 241 GATATGACGACCACCATAAAAGAGGAAGAAGTAAATATTCGGGCAAGTTATGCGGTATCG 300
||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 354 GATATGAAGACCACCATAAAAGACGAAGAAGTAAATATTCGAGCAAGCTATGCGGTATCG 413
Query 301 ACTACATGGATATTA-CCTGATATATTCGTGGAGCTTATACTTAACGATTCAATATTTAT 359
||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 414 ACTGCATGGATATTATCC-GATATATTCGTGGAGCTTATACTTAACGATTCAATTTTTAT 472
Query 360 CGTGGAGTTCATTCTCAGAATGTACGAAAGTCATGAAAAAATTGGTGACATGATTGTGGA 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 CGTGGAGTTCATTCTCAGAATGTATGAAAGTCATGAAAAAATTGGTGACATGATTGTGGA 532
Query 420 CAAACCTTTTTATACTTCCACGGTTCTTGATGATCTTACCTTGCTCGAGAATCAGCTTCC 479
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 533 CAAACCTTTTTACACTTCCACGGTTCTTGATGACCTTACCTTGCTCGAGAATCAGCTTCC 592
Query 480 CTACTTTTGTTTAAGTAAGTTGTTAAACCCCATTACAAAAAGATTTTGTGGAGATCAGAC 539
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 593 TTACTTCTGTTTAAGTAAGTTGTTAAACCCCATTACAAAGAGATTTTGTGGAGATCAGTC 652
Query 540 GCTGGACCAAGTCATCCTCCAATTATTTTCAGTCAATGATAGTGGTATGATCAATGAGAA 599
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 653 GCTGGACCAAGTCATCCTCCAGTTATTTTCAGTCAATGATAGTGGCATGATCAATGAGAA 712
Query 600 TACAAAGTTCAATCACTTCACAGATTTATTCCGGTGTGTTTACAAGGAATCGCTTGGCCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 TACAAAGTTCAATCACTTCACAGATTTATTCCGGTGTGTTTACAAGGAATCACTTGGCCA 772
Query 660 GAATATAGAGTTG-ACAGACTCGAATAGCCAGATCGTGGATATGAAGAACGCGGATAAGC 718
|||| |||||||| ||| ||||||| |||||||||||||||||||||| |||| ||| ||
Sbjct 773 GAATCTAGAGTTGAACA-ACTCGAAAAGCCAGATCGTGGATATGAAGAGCGCGAATATGC 831
Query 719 TAT-CTAGTGTAGGAGTGGAATTTAAGGTAGTGAATCGTGAGTTTTCGCTGAATGTATCA 777
||| | |||||||||||||| || ||||||||||| ||||||| ||| ||||||||||||
Sbjct 832 TATAC-AGTGTAGGAGTGGACTTCAAGGTAGTGAAGCGTGAGTATTCACTGAATGTATCA 890
Query 778 TTCGAGGAAGGTTGCTTAATATTGCCGAGTTTTCCTGCCGATGAATCTTCTAATATCATC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TTCGAGGAAGGTTGCTTAATATTGCCGAGTTTTCCTGCCGATGAATCTTCTAATATCATC 950
Query 838 CTTAGAAATGTCATTGCATATGAGCAATGCCATGATCCTGAAAATGCCTTCACTACAAAT 897
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 951 CTTAGAAATGTCATCGCATATGAGCAATGCCATGATCCTGAAAATGCCTTTACTACAAAT 1010
Query 898 TACATACATTTCATGAATTTCCTTATTACCTCAGATGAAGACGTGGCGT-TACTCACTTC 956
|||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 1011 TACATAAATTTCATGAATTTCCTTATTACCTCCGATGAAGACGTGGC-TATACTCACTTC 1069
Query 957 AGCAGGGGTTCTAACAAACGGTGTAGGGCGATCAAGCATGGTGCTGAAGATGGTGAATAA 1016
|||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1070 AGCAGGAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGAATAA 1129
Query 1017 ATTAGCTATAGGAGTGTTGCTATCAAATCAAAGTCAATATCACGACATTGTCGAGAAACT 1076
||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 1130 CTTAGCTATAGGAGTGTTGCTATCGAATCAGAGCCAATATCACGACATTGTTGAGAAACT 1189
Query 1077 CAACATTCACCATAATTCTCGTAGGAAAAGAATATGGGCGAAACTCAGAAAAGTCTACTT 1136
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1190 CAACATTCACCATAGTTCTCGTAGGAAAAGGATATGGGCGAAACTAAGAAAAGTCTACTT 1249
Query 1137 CAGCGACCTATGGACGACAACAGCTACGTTAGCTGCCATATCTCTTTTGCTACTGACTCT 1196
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CAGCGACTTATGGACGACAACAGCTACGTTAGCTGCCATATCTCTTTTGCTACTGACTCT 1309
Query 1197 AGCTGGGACAGTGGCTTCTATTATTCAAGCTATCAAGAGTTAA 1239
|||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 1310 AGCTGGGACAGTGGCTTCCATTTTTCAAGCTATCAAGAGCTAA 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5