BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315746 Length=2184 Score E Sequences producing significant alignments: (Bits) Value AT1G67325.2 | Symbols: | Ran BP2/NZF zinc finger-like superfam... 1227 0.0 AT1G67320.3 | Symbols: | DNA primase, large subunit family | c... 798 0.0 > AT1G67325.2 | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr1:25209394-25213253 REVERSE LENGTH=1734 Length=1734 Score = 1227 bits (664), Expect = 0.0 Identities = 718/744 (97%), Gaps = 4/744 (1%) Strand=Plus/Plus Query 1 ATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAAAATCTGCTCCCAAACCT 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 566 ATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAAAGTCTGCTCCCAAACCT 625 Query 61 ATGCAACCA-CAACAAGGTTTCTCATCACCCGGGCCATATTTAGGATCTGGGGGTCCCCC 119 |||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 626 ATGCAA-CATCAACAAGGTTTCTCATCACCCGGGGCATACTTAGGATCTGGGGGTCCCCC 684 Query 120 TCCAGTATATATGGGCGGGTCACCATATGGATCTTCTCTCTTTAATGGGTCGTCTATGCC 179 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 685 TCCAGTATATATGGGCGGGTCACCATATGGATCTCCTCTCTTTAATGGATCGTCTATGCC 744 Query 180 TCCTTATGACGTCCCATTTTCTGGGGGTTCACCTTACCATTTTAACTATAATAGCCGAAT 239 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 745 TCCTTATGACGTCCCATTTTCTGGGGGTTCGCCTTACCATTTTAACTATAATAGCCGAAT 804 Query 240 TCCTTCCGGAGCTCATTACAGACCACTACATATGTCTGGACCACCACCATACCATGGCGG 299 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 805 GCCTGCCGGAGCTCATTACAGACCATTACATATGTCTGGACCACCACCATACCATGGCGG 864 Query 300 ATCTATGATGGGAAGTGGTGGTATGTATGGAATGCCTCCACCAATAGACAGGTATGGCCT 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 ATCTATGATGGGAAGTGGTGGTATGTATGGAATGCCTCCACCAATAGACAGGTATGGCCT 924 Query 360 TGGTATGGCAATGGGTCCTGGTGCTGCCGCTGCCATGATGCCTAGACCAAGGTTTTACCC 419 |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 925 TGGTATGGCAATGGGTCCTGGTTCTGCCGCTGCCATGATGCCAAGACCAAGGTTTTACCC 984 Query 420 AGATGAAAAATCACAAAAGAGAGATTCAACTCGTGATAATGATTGGACATGTCCGAATTG 479 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 985 AGATGAAAAATCACAAAAGAGAGATTCAACTCGCGATAATGATTGGACATGTCCGAATTG 1044 Query 480 TGGTAATGTAAACTTTTCATTCAGAATTGTATGTAACATGAGGAAGTGCAACACTCCAAA 539 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1045 TGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAA 1104 Query 540 GCCTGGTTCCCAGCAGGGTGGAAGCTCAGATAAAATATCAAAACAAAATGCACCGGAAGG 599 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1105 GCCTGGTTCTCAGCAGGGTGGAAGCTCAGATAAAATATCCAAACAAAATGCACCGGAAGG 1164 Query 600 GAGCTGGAAGTGTGATAATTGTGGAAATATAAACTATCCATTCAGGAGCAAATGCAACAG 659 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1165 GAGCTGGAAGTGTGATAACTGTGGAAATATAAACTACCCATTCAGGAGCAAATGCAACAG 1224 Query 660 GCAAAACTGTGGAGCTGATAAACCAGGGGATCAGTCGAATGGATCTCCTTCCCGTGCACC 719 ||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||| Sbjct 1225 GCAAAACTGTGGAGCTGATAAGCCTGGGGATCGGTCGAATGGATCTCCGTCCCGTGCACC 1284 Query 720 AGAAGAGAACGATCAGGGTGAGTC 743 |||||||||||||||| |||||| Sbjct 1285 AGAAGAGAACGATCAG--TGAGTC 1306 > AT1G67320.3 | Symbols: | DNA primase, large subunit family | chr1:25205383-25209033 REVERSE LENGTH=1677 Length=1677 Score = 798 bits (432), Expect = 0.0 Identities = 484/509 (95%), Gaps = 4/509 (1%) Strand=Plus/Plus Query 799 gaagaagaagaagaaTCAGTAAAAATGGAAGTAATACGCTCTCAGAAGCGAACAGTCTCC 858 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 44 GAAGAAGAAGTAGAATCAGTAAAAATGGAAGTGATACGCTCTCAGAAGCGAACAGTCTCC 103 Query 859 AACGACGTCGTTTCAACTCCAACGCTTCCCCTCTATCTTACAGCTCCACCCATGGAAGTC 918 |||||||||||||||||||| |||||||| || |||||||||||||||| |||||||||| Sbjct 104 AACGACGTCGTTTCAACTCCCACGCTTCCTCTGTATCTTACAGCTCCACACATGGAAGTC 163 Query 919 CGCTTAGAAGAGTTCGAGCTCTTCGCCATCGATCGCTTACGAGTTCTGAAAGGAGTCTCA 978 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 164 CGCTTAGAAGAGTTTGAGCTCTTCGCCATCGATCGCTTACGAGTTCTTAAAGGAGTCTCA 223 Query 979 GATGGATTAGCTCGTGGACGAAACCCTAATGAAATGGATGATCTTGTAGAGACTTTGTGG 1038 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 224 GATGGATTAGCTCGTGCACGAAACCCTAACGAAATGGATGATCTTGTAGAGACTTTGTGG 283 Query 1039 AAAGAACATATGAGACTTCCTG-ATGTTTCAGAAATGATCAATAAAGATATAATCTCTCA 1097 |||||||||||||||||| | | |||||||||||||||||||||| ||||||||||| || Sbjct 284 AAAGAACATATGAGACTTTC-GAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCA 342 Query 1098 TTTCGTTCTTCGTCTCGTTTATTGTAGATCGGATGAGTTGAAGAAATGGTTTCTTAGTAT 1157 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 343 TTTTGTTCTTCGTCTCGTTTATTGTAGATCGGATGAATTGAAGAAATGGTTTCTTAGCAT 402 Query 1158 GGAAACCGCTCTTTTCCGCCATAGATTCAGGCTTAAAAAGATTGAAGAACAGAGAGCAAT 1217 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 403 GGAAACCGCGCTTTTCCGCCATAGATTCCGGCTTAAAAAGATTGAAGAACAGAGAGCAAT 462 Query 1218 TGTGGGAGAATTTGGACTACCGTATAAGGCAGTCATAGGGGCAGAACTTGAG--TTTGAA 1275 ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 463 TGTGGGAGAATTTGGACTACCGTATAAGGCAGTCATAGGTGCAGAACTTGAGAGTTTGAA 522 Query 1276 GGAGAAGTTGGGGCTAGTTGCACGTTCAC 1304 ||||| ||||||||||||||| ||||||| Sbjct 523 GGAGAGGTTGGGGCTAGTTGCGCGTTCAC 551 Score = 771 bits (417), Expect = 0.0 Identities = 435/444 (98%), Gaps = 0/444 (0%) Strand=Plus/Plus Query 1741 GGTGTGGGTCTGAAGTTGGATGACGCCTTAGCGTTTTGGAGAGAAGAATTCACAAAAAAG 1800 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1097 GGTGTGGGTCTGAAGTTGGATGACGCCTTAGCGTTTTGGAGAGAAGAATTTACAAAAAAG 1156 Query 1801 GTTGGCTCTGAGAGATTTGATAAAGAGTATGCGTATGCCATTCGCCATAACTATGGGAAG 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 GTTGGCTCTGAGAGATTTGATAAAGAGTATGCGTATGCCATTCGCCATAACTATGGGAAG 1216 Query 1861 GAAGGCAAGAGAACAGATTATACACCTTATGCTTGTTCAAAGATCATCACATCTGCTCCT 1920 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1217 GAAGGCAAGAGAACAGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCT 1276 Query 1921 GGTGCTGGGGATCATCACGGCTGTCCTTATCGACATTTCAGTGAGGATAACCTGAAAGCA 1980 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1277 GGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGTGAGGATAACCTGAAAGCA 1336 Query 1981 GCACTTAGTAGAATGGGATTGAGTTCTCGTGGAATGGAAGACGTAATGGATAAAGTGCGG 2040 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1337 GCACTTAGTAGAATGGGATTGAGTTCTCGTGGTATGGAAGACGTAATGGATAAAGTGCGG 1396 Query 2041 AACAGACATTATCAGCTCGCATGCACCTTGACCTTTGAAGCTGTTTATGGTACATCCTGT 2100 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1397 AACAGACATTATCAGCTCGCATGCACCTTAACCTTTGAAGCTGTTTATGGTACATCATGT 1456 Query 2101 GATACTGGGATCAACCATCCTAACCAATACTTCGAAGAAAGTCAGAAGATTCTGAAATCC 2160 |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1457 GATACTGGTATCAACCATCCCAACCAATACTTTGAAGAAAGTCAGAAGATTCTGAAATCC 1516 Query 2161 AAGACTCCAGCTGCTCCGGTTTAA 2184 |||||||||||||||||||||||| Sbjct 1517 AAGACTCCAGCTGCTCCGGTTTAA 1540 Score = 472 bits (255), Expect = 9e-132 Identities = 319/348 (92%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 1393 GTTCCTTTTGAAGAGGTTCCTGACCTTGTAGCTGGCCGGAGAGTATTATTACAGAAAGGG 1452 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 701 GTTCCTTTTGAAGAGGTTCCTGACCTTGTAGCTAGTCGGAGAGTATTATTACAGAAAGGG 760 Query 1453 TATGCCTTTGTAGCTGGCAGTCAGGCAAGTCATGGTTTGGTTTCCCTTGTTGTCACACAA 1512 | ||||||||||||| | || | | ||| | |||||||||||||||||||||||| Sbjct 761 TTTGCCTTTGTAGCT-G--GT-A--C---TCA--G-TTGGTTTCCCTTGTTGTCACACAA 808 Query 1513 TTTCGATCTCATTTGTCGAAGGCACTCATTCTGACAAACAGAAAATGGACGACTACCATT 1572 |||||||||||| | || ||||| |||||||| ||||||||||| ||||| ||||||||| Sbjct 809 TTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGAAAGTGGACAACTACCATT 868 Query 1573 CGAGAACGAGAAAAAGACAGACTAACTCCAATAGTAGAGGCGTTATCTACAAGCTATTTG 1632 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 869 CGAGAACGAGAAAAAGACAGACTAACTCCAATCGTAGAAGCGTTATCTACAAGCTACTTG 928 Query 1633 GGTCCTGATTATTCTCAGTCAAGTGAGTACGCTGACATATCACTTAAGGATATTGATCAA 1692 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 929 GGTCCTGATTATTCTCAATCAAATGAGTACGCTGACATATCACTTAAGGATATTGATCAA 988 Query 1693 GTTTCCAAGAGTTCCTTTCCCCTTTGTATGCGGCATCTATTTGAAAAA 1740 ||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 989 GTTTCCAAGAGTTCCTTCCCCCTTTGTATGAGGCATCTATTTGAAAAA 1036 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108332776110 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5