BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315746
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67325.2 | Symbols: | Ran BP2/NZF zinc finger-like superfam... 1227 0.0
AT1G67320.3 | Symbols: | DNA primase, large subunit family | c... 798 0.0
> AT1G67325.2 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:25209394-25213253 REVERSE LENGTH=1734
Length=1734
Score = 1227 bits (664), Expect = 0.0
Identities = 718/744 (97%), Gaps = 4/744 (1%)
Strand=Plus/Plus
Query 1 ATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAAAATCTGCTCCCAAACCT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 566 ATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAAAGTCTGCTCCCAAACCT 625
Query 61 ATGCAACCA-CAACAAGGTTTCTCATCACCCGGGCCATATTTAGGATCTGGGGGTCCCCC 119
|||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 626 ATGCAA-CATCAACAAGGTTTCTCATCACCCGGGGCATACTTAGGATCTGGGGGTCCCCC 684
Query 120 TCCAGTATATATGGGCGGGTCACCATATGGATCTTCTCTCTTTAATGGGTCGTCTATGCC 179
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 685 TCCAGTATATATGGGCGGGTCACCATATGGATCTCCTCTCTTTAATGGATCGTCTATGCC 744
Query 180 TCCTTATGACGTCCCATTTTCTGGGGGTTCACCTTACCATTTTAACTATAATAGCCGAAT 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 745 TCCTTATGACGTCCCATTTTCTGGGGGTTCGCCTTACCATTTTAACTATAATAGCCGAAT 804
Query 240 TCCTTCCGGAGCTCATTACAGACCACTACATATGTCTGGACCACCACCATACCATGGCGG 299
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 805 GCCTGCCGGAGCTCATTACAGACCATTACATATGTCTGGACCACCACCATACCATGGCGG 864
Query 300 ATCTATGATGGGAAGTGGTGGTATGTATGGAATGCCTCCACCAATAGACAGGTATGGCCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ATCTATGATGGGAAGTGGTGGTATGTATGGAATGCCTCCACCAATAGACAGGTATGGCCT 924
Query 360 TGGTATGGCAATGGGTCCTGGTGCTGCCGCTGCCATGATGCCTAGACCAAGGTTTTACCC 419
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 925 TGGTATGGCAATGGGTCCTGGTTCTGCCGCTGCCATGATGCCAAGACCAAGGTTTTACCC 984
Query 420 AGATGAAAAATCACAAAAGAGAGATTCAACTCGTGATAATGATTGGACATGTCCGAATTG 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 985 AGATGAAAAATCACAAAAGAGAGATTCAACTCGCGATAATGATTGGACATGTCCGAATTG 1044
Query 480 TGGTAATGTAAACTTTTCATTCAGAATTGTATGTAACATGAGGAAGTGCAACACTCCAAA 539
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1045 TGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAA 1104
Query 540 GCCTGGTTCCCAGCAGGGTGGAAGCTCAGATAAAATATCAAAACAAAATGCACCGGAAGG 599
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1105 GCCTGGTTCTCAGCAGGGTGGAAGCTCAGATAAAATATCCAAACAAAATGCACCGGAAGG 1164
Query 600 GAGCTGGAAGTGTGATAATTGTGGAAATATAAACTATCCATTCAGGAGCAAATGCAACAG 659
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1165 GAGCTGGAAGTGTGATAACTGTGGAAATATAAACTACCCATTCAGGAGCAAATGCAACAG 1224
Query 660 GCAAAACTGTGGAGCTGATAAACCAGGGGATCAGTCGAATGGATCTCCTTCCCGTGCACC 719
||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||||
Sbjct 1225 GCAAAACTGTGGAGCTGATAAGCCTGGGGATCGGTCGAATGGATCTCCGTCCCGTGCACC 1284
Query 720 AGAAGAGAACGATCAGGGTGAGTC 743
|||||||||||||||| ||||||
Sbjct 1285 AGAAGAGAACGATCAG--TGAGTC 1306
> AT1G67320.3 | Symbols: | DNA primase, large subunit family |
chr1:25205383-25209033 REVERSE LENGTH=1677
Length=1677
Score = 798 bits (432), Expect = 0.0
Identities = 484/509 (95%), Gaps = 4/509 (1%)
Strand=Plus/Plus
Query 799 gaagaagaagaagaaTCAGTAAAAATGGAAGTAATACGCTCTCAGAAGCGAACAGTCTCC 858
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 44 GAAGAAGAAGTAGAATCAGTAAAAATGGAAGTGATACGCTCTCAGAAGCGAACAGTCTCC 103
Query 859 AACGACGTCGTTTCAACTCCAACGCTTCCCCTCTATCTTACAGCTCCACCCATGGAAGTC 918
|||||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||
Sbjct 104 AACGACGTCGTTTCAACTCCCACGCTTCCTCTGTATCTTACAGCTCCACACATGGAAGTC 163
Query 919 CGCTTAGAAGAGTTCGAGCTCTTCGCCATCGATCGCTTACGAGTTCTGAAAGGAGTCTCA 978
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 164 CGCTTAGAAGAGTTTGAGCTCTTCGCCATCGATCGCTTACGAGTTCTTAAAGGAGTCTCA 223
Query 979 GATGGATTAGCTCGTGGACGAAACCCTAATGAAATGGATGATCTTGTAGAGACTTTGTGG 1038
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 224 GATGGATTAGCTCGTGCACGAAACCCTAACGAAATGGATGATCTTGTAGAGACTTTGTGG 283
Query 1039 AAAGAACATATGAGACTTCCTG-ATGTTTCAGAAATGATCAATAAAGATATAATCTCTCA 1097
|||||||||||||||||| | | |||||||||||||||||||||| ||||||||||| ||
Sbjct 284 AAAGAACATATGAGACTTTC-GAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCA 342
Query 1098 TTTCGTTCTTCGTCTCGTTTATTGTAGATCGGATGAGTTGAAGAAATGGTTTCTTAGTAT 1157
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 343 TTTTGTTCTTCGTCTCGTTTATTGTAGATCGGATGAATTGAAGAAATGGTTTCTTAGCAT 402
Query 1158 GGAAACCGCTCTTTTCCGCCATAGATTCAGGCTTAAAAAGATTGAAGAACAGAGAGCAAT 1217
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 403 GGAAACCGCGCTTTTCCGCCATAGATTCCGGCTTAAAAAGATTGAAGAACAGAGAGCAAT 462
Query 1218 TGTGGGAGAATTTGGACTACCGTATAAGGCAGTCATAGGGGCAGAACTTGAG--TTTGAA 1275
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 463 TGTGGGAGAATTTGGACTACCGTATAAGGCAGTCATAGGTGCAGAACTTGAGAGTTTGAA 522
Query 1276 GGAGAAGTTGGGGCTAGTTGCACGTTCAC 1304
||||| ||||||||||||||| |||||||
Sbjct 523 GGAGAGGTTGGGGCTAGTTGCGCGTTCAC 551
Score = 771 bits (417), Expect = 0.0
Identities = 435/444 (98%), Gaps = 0/444 (0%)
Strand=Plus/Plus
Query 1741 GGTGTGGGTCTGAAGTTGGATGACGCCTTAGCGTTTTGGAGAGAAGAATTCACAAAAAAG 1800
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1097 GGTGTGGGTCTGAAGTTGGATGACGCCTTAGCGTTTTGGAGAGAAGAATTTACAAAAAAG 1156
Query 1801 GTTGGCTCTGAGAGATTTGATAAAGAGTATGCGTATGCCATTCGCCATAACTATGGGAAG 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GTTGGCTCTGAGAGATTTGATAAAGAGTATGCGTATGCCATTCGCCATAACTATGGGAAG 1216
Query 1861 GAAGGCAAGAGAACAGATTATACACCTTATGCTTGTTCAAAGATCATCACATCTGCTCCT 1920
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1217 GAAGGCAAGAGAACAGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCT 1276
Query 1921 GGTGCTGGGGATCATCACGGCTGTCCTTATCGACATTTCAGTGAGGATAACCTGAAAGCA 1980
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1277 GGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGTGAGGATAACCTGAAAGCA 1336
Query 1981 GCACTTAGTAGAATGGGATTGAGTTCTCGTGGAATGGAAGACGTAATGGATAAAGTGCGG 2040
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1337 GCACTTAGTAGAATGGGATTGAGTTCTCGTGGTATGGAAGACGTAATGGATAAAGTGCGG 1396
Query 2041 AACAGACATTATCAGCTCGCATGCACCTTGACCTTTGAAGCTGTTTATGGTACATCCTGT 2100
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1397 AACAGACATTATCAGCTCGCATGCACCTTAACCTTTGAAGCTGTTTATGGTACATCATGT 1456
Query 2101 GATACTGGGATCAACCATCCTAACCAATACTTCGAAGAAAGTCAGAAGATTCTGAAATCC 2160
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1457 GATACTGGTATCAACCATCCCAACCAATACTTTGAAGAAAGTCAGAAGATTCTGAAATCC 1516
Query 2161 AAGACTCCAGCTGCTCCGGTTTAA 2184
||||||||||||||||||||||||
Sbjct 1517 AAGACTCCAGCTGCTCCGGTTTAA 1540
Score = 472 bits (255), Expect = 9e-132
Identities = 319/348 (92%), Gaps = 12/348 (3%)
Strand=Plus/Plus
Query 1393 GTTCCTTTTGAAGAGGTTCCTGACCTTGTAGCTGGCCGGAGAGTATTATTACAGAAAGGG 1452
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 701 GTTCCTTTTGAAGAGGTTCCTGACCTTGTAGCTAGTCGGAGAGTATTATTACAGAAAGGG 760
Query 1453 TATGCCTTTGTAGCTGGCAGTCAGGCAAGTCATGGTTTGGTTTCCCTTGTTGTCACACAA 1512
| ||||||||||||| | || | | ||| | ||||||||||||||||||||||||
Sbjct 761 TTTGCCTTTGTAGCT-G--GT-A--C---TCA--G-TTGGTTTCCCTTGTTGTCACACAA 808
Query 1513 TTTCGATCTCATTTGTCGAAGGCACTCATTCTGACAAACAGAAAATGGACGACTACCATT 1572
|||||||||||| | || ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 809 TTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGAAAGTGGACAACTACCATT 868
Query 1573 CGAGAACGAGAAAAAGACAGACTAACTCCAATAGTAGAGGCGTTATCTACAAGCTATTTG 1632
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 869 CGAGAACGAGAAAAAGACAGACTAACTCCAATCGTAGAAGCGTTATCTACAAGCTACTTG 928
Query 1633 GGTCCTGATTATTCTCAGTCAAGTGAGTACGCTGACATATCACTTAAGGATATTGATCAA 1692
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 929 GGTCCTGATTATTCTCAATCAAATGAGTACGCTGACATATCACTTAAGGATATTGATCAA 988
Query 1693 GTTTCCAAGAGTTCCTTTCCCCTTTGTATGCGGCATCTATTTGAAAAA 1740
||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 989 GTTTCCAAGAGTTCCTTCCCCCTTTGTATGAGGCATCTATTTGAAAAA 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108332776110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5