BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315776
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67600.1 | Symbols: | Acid phosphatase/vanadium-dependent h... 765 0.0
AT1G24350.3 | Symbols: | Acid phosphatase/vanadium-dependent h... 387 7e-107
> AT1G67600.1 | Symbols: | Acid phosphatase/vanadium-dependent
haloperoxidase-related protein | chr1:25336423-25337662 REVERSE
LENGTH=977
Length=977
Score = 765 bits (414), Expect = 0.0
Identities = 466/492 (95%), Gaps = 0/492 (0%)
Strand=Plus/Plus
Query 1 ATGGATCAACCGGTGGCTTCATCTTCGTCACACTATATCTCAATTTTCACAAATTTCCCT 60
||||| || |||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 208 ATGGAGGAATCGGTGGCTTCATCTTCCTCGCACTATATCTCAATTTTCACAAATTACCCT 267
Query 61 CTGATTTCATCCCTTCTAGCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGG 120
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CTGATTTCCGCCGTTTTAGCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGG 327
Query 121 TATAAAGAAAGGAGATGGGATTTGAAACGACTTGTTGGGTCTGGAGGAATGCCTTCGTCA 180
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 328 TATAAAGAAAGGAGATGGGATTTGAAACGGCTTGTTGGGTCTGGAGGTATGCCTTCATCA 387
Query 181 CATTCAGCAACAGTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGCTTTGGTGGA 240
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 388 CATTCAGCAACGGTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGTTTTGGTGGT 447
Query 241 TCACATTTCGCTATCGCTTTGGTTCTCACTACCATTGTTATGTATGATGCAACTGGTGTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TCACATTTCGCTATCGCTTTGGTTCTCACTACCATTGTTATGTATGATGCAACTGGTGTA 507
Query 301 AGGTTACATGCTGGCCGCCAAGCTGAGGTTCTTAATCAGATTGTGTATGAACTTCCTGCA 360
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 508 AGGTTACATGCTGGACGCCAAGCTGAGGTTCTAAATCAGATTGTGTATGAACTTCCTGCA 567
Query 361 GAGCATCCTCTGGCTGAAAGCAGACCGTTGCGTGAACTTCTAGGTCATACTCCTCCACAG 420
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct 568 GAGCATCCTCTGGCTGAAACCAGACCTTTGCGTGAACTTCTAGGTCATACTCCTCCCCAG 627
Query 421 GTCATTGCTGGTGGAATGCTTGGAATATCCACAGCAGTTGTTGGGTACTTAGTCATCTTG 480
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 628 GTTATTGCTGGTGGAATGCTTGGAATATCTACAGCAGTTGTTGGGTACTTAGTCATCTTG 687
Query 481 ATAACAAAGTAG 492
|| | ||||||
Sbjct 688 TTAGCCAAGTAG 699
> AT1G24350.3 | Symbols: | Acid phosphatase/vanadium-dependent
haloperoxidase-related protein | chr1:8638982-8640825 REVERSE
LENGTH=924
Length=924
Score = 387 bits (209), Expect = 7e-107
Identities = 345/410 (84%), Gaps = 12/410 (3%)
Strand=Plus/Plus
Query 17 CTTCATCTTCGTCACACTATATCTCAATTTTCACAAATT-TCCCTCTGATTTCATC-CCT 74
|||| ||||| | || ||| |||| |||||||| |||| | ||||| ||||| | ||
Sbjct 276 CTTCGTCTTCCACTCATTATTTCTCCATTTTCACGAATTAT-CCTCTCATTTC--CGCCG 332
Query 75 TCTA--GCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGGTATAAAGAAAGG 132
|| | ||||||| ||||| |||||||||||| |||||||||||||||||| ||| ||
Sbjct 333 TC-ACCTCTTTCACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTATAGGGAACGG 391
Query 133 AGATGGGATTTGAAACGA-CTTGTTGGGTCTGGAGGAATGCCTTCGTCACATTCAGCAAC 191
||||||||| | |||| | ||| |||||||||||||||||||||| || |||||||| ||
Sbjct 392 AGATGGGATCTCAAAC-AGCTTATTGGGTCTGGAGGAATGCCTTCTTCGCATTCAGCGAC 450
Query 192 AGTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGCTTTGGTGGATCACATTTCGC 251
||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 451 CGTTACAGCTCTCGCTGTAGCTATTGGTTTACAAGAAGGCTTTGGTGGATCACATTTTGC 510
Query 252 TATCGCTTTGGTTCTCACTACCA-TTGTTATGTATGATGCAACTGGTGTAAGGTTACATG 310
|| |||||| || | | | | |||| ||||||||||| || ||||| || |||||||
Sbjct 511 CATTGCTTTGATTTTGGC-ATCTGTTGTGATGTATGATGCTACCGGTGTTAGATTACATG 569
Query 311 CTGGCCGCCAAGCTGAGGTTCTTAATCAGATTGTGTATGAACTTCCTGCAGAGCATCCTC 370
|||| || |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
Sbjct 570 CTGGTCGTCAAGCTGAGGTTCTCAATCAGATTGTATATGAACTTCCTGCAGAACATCCGC 629
Query 371 TGGCTGAAAGCAGACCGTTGCGTGAACTTCTAGGTCATACTCCTCCACAG 420
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||
Sbjct 630 TGGCTGAAAGCAGACCTTTGCGGGAACTTCTTGGTCATACCCCTCCCCAG 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5