BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315794
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2394 0.0
AT1G67792.1 | Symbols: | other RNA | chr1:25417609-25420229 FO... 689 0.0
> AT1G67790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G01680.1);
Has 208 Blast hits to 125 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25417542-25420099
REVERSE LENGTH=1731
Length=1731
Score = 2394 bits (1296), Expect = 0.0
Identities = 1608/1757 (92%), Gaps = 28/1757 (2%)
Strand=Plus/Plus
Query 1 ATGAATTTCCGAAGTGACATCTCTGCCCTGAATGAAGACATCATAATTGAGCAGCTACTT 60
|||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTTCCGACGCGACATCTCTGCTCTGAATGAAGACATCATAGTTGAGCAGCTACTT 60
Query 61 CGTAGCCATGATCCTGACGGTCGCTGGCTTGATTCTGAAATGCTGCTTCAAGAAGTCGAA 120
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CGTAGCCATGATCCAGACGGTCGCTGGCTTGATTCCGAAATGCTGCTTCAAGAAGTCGAA 120
Query 121 ACTATCTTAAGCTTTGTTCTGCAAGATGATGTATCAATG-CCGCTTATGACAGAGAACTG 179
|| ||||||||||||||||||||| ||||||| || | | |||||| |||||||||| ||
Sbjct 121 ACCATCTTAAGCTTTGTTCTGCAAAATGATGTTTCTA-GACCGCTTCTGACAGAGAATTG 179
Query 180 TATTACCAACATTGTAGTTTCTGAATCGACGGAAACACTACCATACGCTATCACCAGAAT 239
||| |||| ||||| ||||| ||| || | |||||||||||||||||||||| ||||||
Sbjct 180 TATCACCACCATTGAAGTTTTTGACTCAAAGGAAACACTACCATACGCTATCTTCAGAAT 239
Query 240 CTCCGTTCAGATGCTTTGTCCATGCACTGGGGAAAGTGATATCCGGACAAGAACATTGGT 299
|||||||||||||||||||||||| |||||||||| ||| ||||||| ||| ||| ||||
Sbjct 240 CTCCGTTCAGATGCTTTGTCCATGTACTGGGGAAAATGAGATCCGGAAAAGGACAATGGT 299
Query 300 TTTGTTTGATCTTCTGAAAGAATACAGATGGGATGCAAAAGCTGTGTTAGTACTAGGAGT 359
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTGTTTGATCTTCTCAAGGAATACAGATGGGATGCAAAAGCTGTGTTAGTACTAGGAGT 359
Query 360 CCTTGCTGCAACATATGGAGGAATATTGCTACCAGTTCATCTAGCCTTGAGTGATCCCGT 419
|||||| ||||||||||||||| ||||||||||||||||||| ||| | ||||||||||
Sbjct 360 CCTTGCCGCAACATATGGAGGACTATTGCTACCAGTTCATCTGGCCATCTGTGATCCCGT 419
Query 420 TGCAGCATCAATTGCAACACTCAACCAGTTTCCCATTGAGAGAACCAAGTTCAGACCATG 479
||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| ||
Sbjct 420 TGCAGCATCAATTGCAAAACTCAACCAGTTGCCTATTGAGAGAACCAAGTTCAGACCGTG 479
Query 480 GTTAGAGTCTCTAAGCTTGCTCATTAAAGCCATGGTGGATGTAACCAAATGCATCATTAA 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GTTAGAGTCTCTAAACTTGCTCATTAAAGCCATGGTGGATGTAACCAAATGCATCATCAA 539
Query 540 ATTTGAAAGACTTCCATTTAAACAAGCGAAGCTAGACAACAACATTGTGGGAGAAACCTT 599
|||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 ATTTGAAAAAATTCCATTTAAACAAGCGAAGCTAGACAACAACATTTTGGGAGAAACCTT 599
Query 600 GTCTAACATCTATCTGGCTACTTATCGGGTTGTCAAAAGTGCACTCGCATGCATGAAACA 659
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 600 GTCTAACATCTATCTGACTACTTATCGGGTTGTCAAAAGTGCACTCACATGCATGCAGCA 659
Query 660 AATCCCTTATTTCAAGCAAACCCAGCGGATACCTATAACTGAGCTACAAGAAAAGGTAAT 719
|||||||||||||||||||| |||| |||| ||||||||||| ||||||| |||||||
Sbjct 660 GATCCCTTATTTCAAGCAAACGCAGCAGATATCTATAACTGAGGTACAAGATAAGGTAAC 719
Query 720 ACTGCTGCTATTATCAAAGCCACCCGTAGAGCCACTTTTCTTCCTGCTTCAACAGTTATA 779
||| |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||
Sbjct 720 ACTACTGCTATTATCAAAGCCACCAGTAGAGCCACTTTTCTTCCTACTCCAACAGCTATA 779
Query 780 CGATCATCCTTCCAACACCAACACAGAACAAAACTACGAAATCCTATGGGTTCCAATACC 839
||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 780 CGATCATCCATCTAACACCAACACAGAACAAAACTACGAGATCATATGGGTTCCAATACC 839
Query 840 ATCATCCCAAAAATGGACAGACGAAGAGAAAGAAATCTTCGATTTCTACTCCAATTCCCT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 ATCATCCCAAAAATGGACAGACGAAGAGAAAGAAATCTTCGATTTCTACTCCAATTCCTT 899
Query 900 ACCATGGATCTCAGTAAGGCAACCATGGTTGCTGAGCTCCACAATACTCAACTTTTTCAA 959
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ACCATGGATCTCAGTAAGGCAACCATGGTTGATGAGCTCCACAATACTCAACTTTTTCAA 959
Query 960 ACGAGAATGGCATTATGGAGACGACGAAGCAATGGTGGTAGTGATCGATCCTAACGGGAG 1019
|| ||||||||||||| ||| ||||||||||| |||| || |||||| ||||||||||
Sbjct 960 ACAAGAATGGCATTATAAAGATAACGAAGCAATGTTGGTTGTTATCGATTCTAACGGGAG 1019
Query 1020 GTTCGTGAACATGAATGCCATGGATATGGTGTTGATATGGGGTGTTAAAGCATATCCATT 1079
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GTTCGTCAACATGAATGCCATGGATATGGTGTTGATTTGGGGTGTTAAAGCATATCCATT 1079
Query 1080 CTCAGTTTCCAGAGAAAATGAGCTCTGGGAAGAACATGGATGGTCTATGCAG-CTCTTGC 1138
||||||||| |||||| ||||||| ||| ||||||||||||||||||| || |||||||
Sbjct 1080 CTCAGTTTCTAGAGAAGATGAGCTTTGGAAAGAACATGGATGGTCTAT-CAATCTCTTGC 1138
Query 1139 TCGATGGAATTCATCCTTCATTTGAAACCTGGGTGAAAGAAGGAAGAGAAATCTGCATAT 1198
| ||||||||||||||| |||||||| || || || | | || |||||||||
Sbjct 1139 TTGATGGAATTCATCCTACATTTGAA----GG---AA-GA-G-A-GA----TCTGCATAT 1183
Query 1199 TCGGAAGCGAGAATTTGGATTGGGTTGATGAATTTGTGTCACTAGCAAGAAAAATTCAAA 1258
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct 1184 TCGGAAGCGAGAATTTGGATTGGATTGACGAATTTGTGTCACTAGCGAGAAAAATTCAAA 1243
Query 1259 ATCTAGGGTTCCAATTAGAGCTGATTTACCTTAGTAATCAAAGGAGAAGAGACGAGCGTG 1318
| ||||||||||| ||||||||||||||||| || || || | ||| ||||||||||
Sbjct 1244 ACCTAGGGTTCCAGTTAGAGCTGATTTACCTAAGCAACCA--G-AGACGAGACGAGCG-- 1298
Query 1319 CAAAAGCCATGGAAGAGAGCTCAATCTTGTTCAGTCCTACATTGCAACAACTCTTCTGGC 1378
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1299 -A---GCCATGGAAGAGAGCTCAATTTTGTTCAGTCCTACATTGCAACAGCTCTTCTGGC 1354
Query 1379 TCCGATTAGAAAGTATCGAACGATCCAAACTCAAGCGAATTGGGATTGAATCATCGAAAT 1438
||||||||||||| |||||| |||| ||||||||||| |||| |||||| ||||||||
Sbjct 1355 TCCGATTAGAAAGCATCGAAAGATCAAAACTCAAGCGGATTGTAATTGAACCATCGAAAC 1414
Query 1439 CTGATCGTGTTTTTGAAGAAGTTACGAAACTTCTCGACTTCGATTATGGTAAACACAAAG 1498
|||||||||||||||||||||||| ||| ||||||||||||||||| || ||||| | ||
Sbjct 1415 CTGATCGTGTTTTTGAAGAAGTTAGGAACCTTCTCGACTTCGATTACGGGAAACATAGAG 1474
Query 1499 GTTGGGGTGTTATTGGAAAAGGATCAACGGCGGAGACGGTTGATGGAGAGAAGATGACGG 1558
||||||| | ||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1475 GTTGGGGAATCATTGGGAATGGATCAACTGCGGAGACGGTTGATGGAGAGAAGATGACGG 1534
Query 1559 AGAGGATGAGGAAGATTGTGCGGTGGGGAGAGTATGCGAGGGGGTTGGGTTTTACGGAGG 1618
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1535 AGAGGATGAGAAAGATTGTGCGGTGGGGAGAGTATGCGAAGGGGTTGGGTTTTACGGAGG 1594
Query 1619 CGATTGAGATTGCGGCGGAGAAGCCGTGTGAACTGAGTCACACGGTGGTTGTTCCGTTTG 1678
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1595 CGATTGAGATTGCGGCGGAGAAGCCGTGTGAACTGAGTCACACGGCGGTTGTTCCGTTTG 1654
Query 1679 AAGAAGCGTTGACGAGGAGAGTTGTCACGTGCGAGAAATGTAAGTGGCCAATGAAGAGGT 1738
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 AAGAAGCGTTGACGATGAAAGTTGTCACGTGCGAGAAATGTAAGTGGCCAATGAAGAGGT 1714
Query 1739 TTGTTGCGTATCAGTAA 1755
||||||| |||||||||
Sbjct 1715 TTGTTGCATATCAGTAA 1731
> AT1G67792.1 | Symbols: | other RNA | chr1:25417609-25420229
FORWARD LENGTH=2524
Length=2524
Score = 689 bits (373), Expect = 0.0
Identities = 444/479 (93%), Gaps = 2/479 (0%)
Strand=Plus/Minus
Query 687 GATACCTATAACTGAGCTACAAGAAAAGGTAATACTGCTGCTATTATCAAAGCCACCCGT 746
|||| ||||||||||| ||||||| ||||||| ||| |||||||||||||||||||| ||
Sbjct 881 GATATCTATAACTGAGGTACAAGATAAGGTAACACTACTGCTATTATCAAAGCCACCAGT 822
Query 747 AGAGCCACTTTTCTTCCTGCTTCAACAGTTATACGATCATCCTTCCAACACCAACACAGA 806
|||||||||||||||||| || |||||| ||||||||||||| || ||||||||||||||
Sbjct 821 AGAGCCACTTTTCTTCCTACTCCAACAGCTATACGATCATCCATCTAACACCAACACAGA 762
Query 807 ACAAAACTACGAAATCCTATGGGTTCCAATACCATCATCCCAAAAATGGACAGACGAAGA 866
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ACAAAACTACGAGATCATATGGGTTCCAATACCATCATCCCAAAAATGGACAGACGAAGA 702
Query 867 GAAAGAAATCTTCGATTTCTACTCCAATTCCCTACCATGGATCTCAGTAAGGCAACCATG 926
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 701 GAAAGAAATCTTCGATTTCTACTCCAATTCCTTACCATGGATCTCAGTAAGGCAACCATG 642
Query 927 GTTGCTGAGCTCCACAATACTCAACTTTTTCAAACGAGAATGGCATTATGGAGACGACGA 986
|||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 641 GTTGATGAGCTCCACAATACTCAACTTTTTCAAACAAGAATGGCATTATAAAGATAACGA 582
Query 987 AGCAATGGTGGTAGTGATCGATCCTAACGGGAGGTTCGTGAACATGAATGCCATGGATAT 1046
||||||| |||| || |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 581 AGCAATGTTGGTTGTTATCGATTCTAACGGGAGGTTCGTCAACATGAATGCCATGGATAT 522
Query 1047 GGTGTTGATATGGGGTGTTAAAGCATATCCATTCTCAGTTTCCAGAGAAAATGAGCTCTG 1106
||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 521 GGTGTTGATTTGGGGTGTTAAAGCATATCCATTCTCAGTTTCTAGAGAAGATGAGCTTTG 462
Query 1107 GGAAGAACATGGATGGTCTATGCAG-CTCTTGCTCGATGGAATTCATCCTTCATTTGAA 1164
| ||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct 461 GAAAGAACATGGATGGTCTAT-CAATCTCTTGCTTGATGGAATTCATCCTACATTTGAA 404
Score = 651 bits (352), Expect = 0.0
Identities = 413/443 (93%), Gaps = 1/443 (0%)
Strand=Plus/Minus
Query 244 GTT-CAGATGCTTTGTCCATGCACTGGGGAAAGTGATATCCGGACAAGAACATTGGTTTT 302
||| ||||||||||||||||| |||||||||| ||| ||||||| ||| ||| |||||||
Sbjct 1994 GTTGCAGATGCTTTGTCCATGTACTGGGGAAAATGAGATCCGGAAAAGGACAATGGTTTT 1935
Query 303 GTTTGATCTTCTGAAAGAATACAGATGGGATGCAAAAGCTGTGTTAGTACTAGGAGTCCT 362
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 GTTTGATCTTCTCAAGGAATACAGATGGGATGCAAAAGCTGTGTTAGTACTAGGAGTCCT 1875
Query 363 TGCTGCAACATATGGAGGAATATTGCTACCAGTTCATCTAGCCTTGAGTGATCCCGTTGC 422
||| ||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||
Sbjct 1874 TGCCGCAACATATGGAGGACTATTGCTACCAGTTCATCTGGCCATCTGTGATCCCGTTGC 1815
Query 423 AGCATCAATTGCAACACTCAACCAGTTTCCCATTGAGAGAACCAAGTTCAGACCATGGTT 482
|||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1814 AGCATCAATTGCAAAACTCAACCAGTTGCCTATTGAGAGAACCAAGTTCAGACCGTGGTT 1755
Query 483 AGAGTCTCTAAGCTTGCTCATTAAAGCCATGGTGGATGTAACCAAATGCATCATTAAATT 542
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1754 AGAGTCTCTAAACTTGCTCATTAAAGCCATGGTGGATGTAACCAAATGCATCATCAAATT 1695
Query 543 TGAAAGACTTCCATTTAAACAAGCGAAGCTAGACAACAACATTGTGGGAGAAACCTTGTC 602
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1694 TGAAAAAATTCCATTTAAACAAGCGAAGCTAGACAACAACATTTTGGGAGAAACCTTGTC 1635
Query 603 TAACATCTATCTGGCTACTTATCGGGTTGTCAAAAGTGCACTCGCATGCATGAAACAAAT 662
||||||||||||| ||||||||||||||||||||||||||||| |||||||| | || ||
Sbjct 1634 TAACATCTATCTGACTACTTATCGGGTTGTCAAAAGTGCACTCACATGCATGCAGCAGAT 1575
Query 663 CCCTTATTTCAAGCAAACCCAGC 685
|||||||||||||||||| ||||
Sbjct 1574 CCCTTATTTCAAGCAAACGCAGC 1552
Score = 540 bits (292), Expect = 2e-152
Identities = 354/384 (92%), Gaps = 3/384 (1%)
Strand=Plus/Minus
Query 1306 AGAGACGAG-CGTGCAAAAGCCATGGAAGAGAGCTCAATCTTGTTCAGTCCTACATTGCA 1364
||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 382 AGAGACGAGACGAGC--GAGCCATGGAAGAGAGCTCAATTTTGTTCAGTCCTACATTGCA 325
Query 1365 ACAACTCTTCTGGCTCCGATTAGAAAGTATCGAACGATCCAAACTCAAGCGAATTGGGAT 1424
||| ||||||||||||||||||||||| |||||| |||| ||||||||||| |||| ||
Sbjct 324 ACAGCTCTTCTGGCTCCGATTAGAAAGCATCGAAAGATCAAAACTCAAGCGGATTGTAAT 265
Query 1425 TGAATCATCGAAATCTGATCGTGTTTTTGAAGAAGTTACGAAACTTCTCGACTTCGATTA 1484
|||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 264 TGAACCATCGAAACCTGATCGTGTTTTTGAAGAAGTTAGGAACCTTCTCGACTTCGATTA 205
Query 1485 TGGTAAACACAAAGGTTGGGGTGTTATTGGAAAAGGATCAACGGCGGAGACGGTTGATGG 1544
|| ||||| | ||||||||| | ||||| || |||||||| |||||||||||||||||
Sbjct 204 CGGGAAACATAGAGGTTGGGGAATCATTGGGAATGGATCAACTGCGGAGACGGTTGATGG 145
Query 1545 AGAGAAGATGACGGAGAGGATGAGGAAGATTGTGCGGTGGGGAGAGTATGCGAGGGGGTT 1604
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 144 AGAGAAGATGACGGAGAGGATGAGAAAGATTGTGCGGTGGGGAGAGTATGCGAAGGGGTT 85
Query 1605 GGGTTTTACGGAGGCGATTGAGATTGCGGCGGAGAAGCCGTGTGAACTGAGTCACACGGT 1664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GGGTTTTACGGAGGCGATTGAGATTGCGGCGGAGAAGCCGTGTGAACTGAGTCACACGGC 25
Query 1665 GGTTGTTCCGTTTGAAGAAGCGTT 1688
||||||||||||||||||||||||
Sbjct 24 GGTTGTTCCGTTTGAAGAAGCGTT 1
Score = 237 bits (128), Expect = 3e-61
Identities = 144/152 (95%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 1 ATGAATTTCCGAAGTGACATCTCTGCCCTGAATGAAGACATCATAATTGAGCAGCTACTT 60
|||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2394 ATGAATTTCCGACGCGACATCTCTGCTCTGAATGAAGACATCATAGTTGAGCAGCTACTT 2335
Query 61 CGTAGCCATGATCCTGACGGTCGCTGGCTTGATTCTGAAATGCTGCTTCAAGAAGTCGAA 120
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2334 CGTAGCCATGATCCAGACGGTCGCTGGCTTGATTCCGAAATGCTGCTTCAAGAAGTCGAA 2275
Query 121 ACTATCTTAAGCTTTGTTCTGCAAGATGATGT 152
|| ||||||||||||||||||||| |||||||
Sbjct 2274 ACCATCTTAAGCTTTGTTCTGCAAAATGATGT 2243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5