BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315818
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68090.1 | Symbols: ANNAT5, ANN5 | annexin 5 | chr1:25519442... 1604 0.0
> AT1G68090.1 | Symbols: ANNAT5, ANN5 | annexin 5 | chr1:25519442-25520774
REVERSE LENGTH=951
Length=951
Score = 1604 bits (868), Expect = 0.0
Identities = 923/950 (97%), Gaps = 2/950 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACAATGAAAATACCAATGACGGTACCTTCTCCTCGAATCGATGCTGACCAACTC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCAACAATGAAAATACCAATGACGGTACCTTCTCCTCGAGTCGATGCTGACCAACTC 60
Query 61 TTTAAGGCCTTCAAAGGAAGAGGCTGCGATACTTCGGTGATCATCAACATCTTAGCTCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTAAGGCCTTCAAAGGAAGAGGCTGCGATACTTCGGTGATCATCAACATCTTAGCTCAT 120
Query 121 CGCAATGCAACGCAACGAGCTCTTATCGAACAAGAATACGAAACCAAATTCTCGGATGAC 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCAATGCAACACAACGAGCTCTCATCGAACAAGAATACGAAACCAAATTCTCGGATGAC 180
Query 181 CTTCGAAAACGTCTCCAATCCGAGCTTCATGGTCATCTCAAGAAAGCCGTTCTTCTGTGG 240
|| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTCCGAAAACGTCTCCACTCTGAGCTTCATGGTCATCTCAAGAAAGCCGTTCTTTTGTGG 240
Query 241 ATGCCTGAAGCAGTGGAGCGAGACGCTTCAATACTGAAACGCTGCTTAAGAGGAGCCGTG 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 ATGCCTGAAGCAGTGGAGCGAGACGCTTCAATACTGAAACGCTCCTTAAGAGGAGCCGTG 300
Query 301 ACTGATCACAAAGCGGTTGCTGAGATTATATGTACACGATCTGGCTCTCAGCTTCGTCAG 360
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ACTGATCATAAAGCGATTGCTGAGATTATATGCACACGATCTGGCTCTCAGCTTCGTCAG 360
Query 361 ATCAAACAGGTCTACTGC-AACACTTACGGTGTGAAACTTGAAGAGGACATCGAATCCGA 419
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATCAAACAGGTCTACT-CAAACACTTTCGGTGTGAAACTTGAAGAGGACATCGAATCCGA 419
Query 420 AGCTTCTGGCAATCACAAAAGAGTTTTGCTCGCATATTTGAACACTACACGATATGAAGG 479
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 420 AGCTTCTGGCAATCACAAAAGAGTTTTGCTCGCGTATTTGAACACTACGCGATATGAAGG 479
Query 480 ACCAGAGATCGATAATGCGAGTGTAGAGAACGATGCTAGGACTCTCAAGAGTGCAGTTGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 480 ACCAGAGATCGATAATGCGAGTGTAGAGAACGATGCTAGGACTCTCAAGAGCGCGGTTGC 539
Query 540 GAGGAAGCATAAATCTGATGACCAGACGTTGATTCAGATATTCACTGACCGAAGCAGGAC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGGAAGCATAAATCTGATGACCAGACGTTGATTCAGATATTCACTGACCGAAGCAGGAC 599
Query 600 TCATTTGGTCGCTGTAAGATCTACTTACCGTTCCATGTACGGCAAAGAACTTGGAAAGGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCATTTGGTCGCTGTAAGATCTACTTACCGTTCCATGTACGGCAAAGAACTTGGAAAGGC 659
Query 660 CATAAGAGATGAGACTCGCGGGAACTTCGAGCACGTCCTTCTAACAATTCTACAATGTGC 719
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 660 CATAAGAGATGAGACTCGCGGGAACTTCGAGCATGTCCTTCTAACAATTTTACAATGTGC 719
Query 720 TGAAAACTCTTGTTTCTATTTCGCAAAGGCACTGAGGAAATCAATGAAAGGATTAGGAAC 779
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 TGAAAACTCTTGTTTCTATTTCGCAAAGGCATTGAGGAAATCAATGAAAGGATTAGGAAC 779
Query 780 AGATGACACGGCGTTGATAAGAATATTGGTGACGAGAGCAGAGGTGGATATGCAGTTCAT 839
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 AGATGACACGGCGTTGATAAGAATCGTGGTGACGAGAGCAGAGGTGGATATGCAGTTCAT 839
Query 840 CATCACAGAATACCGCAAGAGATACAAGAAGACTTTGTACAATGCTGTTCATTCTGATAC 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATCACAGAATACCGTAAGAGATACAAGAAGACTTTGTACAATGCTGTTCATTCTGATAC 899
Query 900 AACTGGTCATTACAGGACTTTTCTCCTCTCTCTTTTAGGACCCAACGTTT 949
|||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 AACTAGTCATTACAGGACTTTTCTCCTCTCTCTTTTAGGCCCCAACGTTT 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5