BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315838
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68210.1 | Symbols: APRR6, PRR6 | pseudo-response regulator ... 841 0.0
> AT1G68210.1 | Symbols: APRR6, PRR6 | pseudo-response regulator
6 | chr1:25565983-25569302 FORWARD LENGTH=2268
Length=2268
Score = 841 bits (455), Expect = 0.0
Identities = 661/758 (87%), Gaps = 23/758 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAGAAGCTTAGTTCATGAAAGTTTTGATGACATTTCCATTCTGCTAATCGACCAT 60
|||||| || ||||||||| |||| || |||||| |||||||| |||||||||||||||
Sbjct 1 ATGGCTGGATGCTTAGTTCCTGAATGTGCTGATGATATTTCCATCCTGCTAATCGACCAT 60
Query 61 GACACTGCATCAGTCGCGTCTCTCACGTCAATGCTTAAACAATTTTCAAAAAGAGTGATG 120
|||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 61 GACACTGCATCAATCGCGTCTCTCACATCAATGCTTCAACAATTTTCAAAAAGAGTGATG 120
Query 121 AGCGTGGATGTGGCAAGTAAGGCTTTATCGATGATTGAGAAGCAGAAGAAGGACATTGGA 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 121 AGCGTGGATGTGGCAAGTAAGGCTCTATCGATGATTGAGAAGCAGAAGAAGGAAATTGGA 180
Query 181 CTTATCATAGCCAACATTGAAATGCCTCACATCGACGCAGATTCCTTCCTCACCGTTTTG 240
|| |||||||| |||||||||||||||||||| ||| || |||| ||||||| | ||||
Sbjct 181 CTCATCATAGCTAACATTGAAATGCCTCACATAGACTCACATTCGTTCCTCAATGCTTTG 240
Query 241 CTTCACAAAGATATTCCTCTCATATTGATCAATCCAGAGATAAAGACAAA-GAAACCATC 299
|||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 241 CTTCTCAAAGATATTCCTCTCATATTGATTAATCCAGAGATAAAGACAAAAGAA-CCATC 299
Query 300 AGATCTTTTGATAAAAAGAGCGTGCTTTTCTCTAGATCAGCCAATTTCTGATAATGACAT 359
||||||||||| ||||||||||||||||||||||||| | |||||||| || | |||||
Sbjct 300 AGATCTTTTGACAAAAAGAGCGTGCTTTTCTCTAGATAAACCAATTTCAAATGACGACAT 359
Query 360 CAAAAACATATGGCAGCACGTGTTAC-CTAAAAAGATTCAAGAGTCAAAGAAAATCAACA 418
||||||||| ||||| ||||| || | ||||||||| |||||||| ||||||||||||||
Sbjct 360 CAAAAACATGTGGCAACACGTCTT-CTCTAAAAAGAGTCAAGAGTTAAAGAAAATCAACA 418
Query 419 TAAC-GATTGTTAACCAGGAGAATGGCACGGACAAAGATATAAATCAGATAGAAGTTTTC 477
|||| || | | | || |||||| || ||| ||||||| | ||||||| |||| ||||
Sbjct 419 TAACTGAA-GATCA--AG-AGAATGTCATGGATAAAGATACATATCAGATTGAAGCTTTC 474
Query 478 AGGGCAAGCCTTAAGAGACAGAGAACAAGTCAAGCTTCTTTGTTAGGAAGACAACCTTTT 537
| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 475 CGAGCAAACCTTAAGAGACAGAGAATAAGTCAAGCTTCTTTGTTAGGAAGACGACCATTC 534
Query 538 ATCGACACATTCACAATTTCCGAAACATCCCAAAAGAGAAAAAATAGGGCAAATGTTGAA 597
||||||||||| ||| || ||||||| |||||||||||||| || ||||||||||||
Sbjct 535 ATCGACACATTTTCAACTTATGAAACATTCCAAAAGAGAAAAAGTATTGCAAATGTTGAA 594
Query 598 TGGAAAACTAAACCAGGTTGT-CTTATTGGGATTGAGAATAAGAGAAAGGAATGGAAGAA 656
|||||||||| |||| ||| | || |||| ||||||||||||||||||||||||||||||
Sbjct 595 TGGAAAACTACACCAAGTTATGCT-ATTGAGATTGAGAATAAGAGAAAGGAATGGAAGAA 653
Query 657 AATGGATAGTAGTGTTGTAAGACGTA-GAAGTTTATGGACTAATGAGCGTCATATGAAGT 715
|| | | || || | |||||||| || |||| |||| || ||||||||| |||||||
Sbjct 654 AA-G--T-GT--TG--G-AAGACGTAAGA-GTTTGTGGAATAGTGAGCGTCACATGAAGT 703
Query 716 TTTTAGCTGCTATCTCCATTCTAGGTGAAAAAG-TTTT 752
|| ||||||||||||||||| | |||||| ||| ||||
Sbjct 704 TTATAGCTGCTATCTCCATTTTGGGTGAAGAAGATTTT 741
Score = 793 bits (429), Expect = 0.0
Identities = 1016/1278 (79%), Gaps = 126/1278 (10%)
Strand=Plus/Plus
Query 749 TTTTATTTAAAAAACCTATCACCGAGAGAAACA--AAA-ATATGCCAAAGTTTCATGTAG 805
|||| |||||||||||||| | |||||| | ||| | ||||||||||||||| |||
Sbjct 1013 TTTTGTTTAAAAAACCTAT--TGGTGAGAAAGAGGAAACA-ATGCCAAAGTTTCATATAG 1069
Query 806 GCGGAAAATCGGATCTGAGCAATCATTCACTTGTTGGTAACATATTTAACAAGTC-ATCT 864
|||| |||| ||||| |||||||||||| || ||||||| | |||||||| | ||||
Sbjct 1070 GCGGGAAATTAGATCTAAGCAATCATTCAGTTCATGGTAACGTCCTTAACAAG-CTATCT 1128
Query 865 ATAAATGTTAACTAT-GTTCCTTCAACCATAAGTAATAACCCACCTTACAATATTC--T- 920
|| |||||||||| | ||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 1129 ATGAATGTTAACT-TCGTTCCTTCAACCATAAGTAATAATCCAGCTTACAATATTCTTTC 1187
Query 921 T-TC--TA-C-C--G-AT-AAT-G--CTAACCATAC-----TAGTTT--A---G-----G 953
| || || | | | || || | ||| | |||| |||||| | | |
Sbjct 1188 TATCGATAGCTCTAGTATCGATAGCTCTAGCTATACTGGTTTAGTTTCAACTGGCTTAAG 1247
Query 954 TAGTGAAAACCT-TCCTATCCTTTCTGGTTTACCATCAAATGTTCGTGCATCTAACACAT 1012
||||||||| | ||||||||||| |||||||||||| |||| | |||||||||||||||
Sbjct 1248 TAGTGAAAA-TTCTCCTATCCTTTATGGTTTACCATCGAATGATGGTGCATCTAACACAT 1306
Query 1013 GCGCATTTCAGATGGAATCCACAAA-GATTTCCATTCCGCAGTATGATCCTAATCCATTT 1071
|| ||| ||||||||||||| ||| |||||| |||||||||||||||||||||| || |
Sbjct 1307 GCACATCTCAGATGGAATCC-GAAAGGATTTCTATTCCGCAGTATGATCCTAATCAATGT 1365
Query 1072 CACCTACCTAGATCTGTCCTTGAAACTGATGTAAGCCAAATAGATTTAGATTTTACATCT 1131
|||| || |||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1366 CACCCACATAGATCCATCCTTGAAACTGATGTAAACCAAATAGATTTAGATTTTACTTCT 1425
Query 1132 ACACCCGATTCTTTTC-ATCCT-T--TAGCA-GA-T--C-TAT----G--CACTAT-GA- 1174
| || ||||| |||| ||||| | ||| | || | | ||| | || || ||
Sbjct 1426 ATACTAGATTC-TTTCGATCCTCTAGTAG-ATGAGTGCCTTATGAAGGAAAACAATAGAT 1483
Query 1175 -AC-T----A---TACCATGAACCCTTTT-GAAACTAATATAGACCAA-ATGGATTGGCT 1223
| | | ||||||||| |||||| || || ||||||| ||| ||||||||| |
Sbjct 1484 TTCTTCCAAACCCTACCATGAA-CCTTTTGGATACCGATATAGA-CAAGATGGATTGGGT 1541
Query 1224 TCCATTTATAGAAAA-TTATAGTCATCATGAAATCAATATGAACCATATGGATTGGGATC 1282
| ||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1542 TTCATTTATAGAAAACCT-TAGTCACCATGATATCAATATGAACCATATGGATTGGGATC 1600
Query 1283 ATTCAATAGAAAATTTCATTCTTCTTGAAACTGATGTGAACATAAGTTTTCCTGAAAAAC 1342
||||| || ||||| | |||||| |||||| | ||||||||| ||||||||||||||
Sbjct 1601 CTTCAACAGCAAATTACGTTCTTCCTGAAACCAACATGAACATAAATTTTCCTGAAAAAC 1660
Query 1343 ATACAAACCAGAT-GGATTGGGTTTCTTCAGGAGAAGGTTATGTTCCTTTTGAAAATGTG 1401
|||||||| |||| || ||||||||||||| || |||||||||||||||||||||| ||
Sbjct 1661 ATACAAACGAGATAGG-TTGGGTTTCTTCACAAGTAGGTTATGTTCCTTTTGAAAATATG 1719
Query 1402 AATCCCTCTAAAGTAGATATAAGCCAGATGGACATAG---ATT----A-----T-T-C-- 1445
| ||||||| |||||||||||| ||| |||| ||| | ||| | | | |
Sbjct 1720 ATTCCCTCTGAAGTAGATATAAACCATATGGGCATGGGTTATTCTGGAGGAAGTATTCCC 1779
Query 1446 --TCAAGAGGAAACTAATACAAACCATGTGGGTTTTGTTTCTTCTGAAATACGTTA-TGG 1502
|||||| |||||||||||||| ||||||| |||||||||| |||||||| | | ||
Sbjct 1780 CCTCAAGAAGAAACTAATACAAATAATGTGGGCTTTGTTTCTTGTGAAATACAT-AGTGA 1838
Query 1503 CATCCCTCCTAAAACTGATATGACCATTCTTGAAGCCAATTATTCAAA-CATGGTAGATT 1561
|||||||| |||||| ||||| ||||||| ||| ||||||||||||| | | ||||||
Sbjct 1839 AATCCCTCCCAAAACTAATATGGCCATTCTAGAAACCAATTATTCAAATCC-GTTAGATT 1897
Query 1562 GTGTTTTTCCTAAAGATATAAGTTCACTTGAAACTAATACCATCCAAAAG-GATTTGGTT 1620
| ||||| ||| ||||||||| |||||| ||||| ||||||||||||||| | |||||||
Sbjct 1898 GGGTTTTCCCTGAAGATATAACTTCACTCGAAACCAATACCATCCAAAAGAG-TTTGGTT 1956
Query 1621 TCTTGTAAAACAAGTTTTGCTGCATTGGATAACATAGTTCCTCTTG-AAGCCAATATGGA 1679
|||||| ||||||||| | ||| |||||||| || |||||| ||| || ||||||||||
Sbjct 1957 TCTTGTGAAACAAGTTACGATGCTTTGGATAATATGGTTCCT-TTGGAAACCAATATGGA 2015
Query 1680 AGAGATGAACTATGTTTCTTATGATGAAAGTTGTGATGCTCCGATTGAAGATCTGATTTC 1739
|||||||||| ||| | ||| | | || | || | | ||||||||||||||||||
Sbjct 2016 AGAGATGAACGATGCT-CTT-T-ACGATA-TT-T----C---GATTGAAGATCTGATTTC 2063
Query 1740 TTTTGACATTAACGTGGATGAGAAGGATATGCCCTCTTGGTTGGACGACAATGGtttttt 1799
|||||||||| | | ||||||||||||| ||||||||| || |||||||||||||
Sbjct 2064 TTTTGACATTGATGCCAATGAGAAGGATATATTCTCTTGGTTAGAAGACAATGGTTTTTC 2123
Query 1800 tGAAAGAGA-TAATATGATGAAGTCTTGCGAATATCACAATGTAGAAAT-TGTGAATCAA 1857
||| || | |||||||||| |||| ||||||||||| ||| ||||| | ||||||||||
Sbjct 2124 TGAG-GAAAATAATATGATGGAGTCATGCGAATATCATAATATAGAA-TCTGTGAATCAA 2181
Query 1858 AGAGATCATTTGAAGGGAGAAGATAATTTTGATGATTATCGTGACAA-CATGGATTGGAT 1916
|| ||| || ||||| ||| ||||| ||||||||||||||||| | ||||||||||||
Sbjct 2182 AGTGATGATATGAAGATAGACGATAACTTTGATGATTATCGTGA-ATGCATGGATTGGAT 2240
Query 1917 TTATGAGGTA-ATGAATA 1933
| | || | | |||||||
Sbjct 2241 TAACGAAG-AGATGAATA 2257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5