BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315840

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68230.2 | Symbols:  | Reticulon family protein | chr1:25572...   800    0.0  


> AT1G68230.2 | Symbols:  | Reticulon family protein | chr1:25572185-25572921 
FORWARD LENGTH=489
Length=489

 Score =  800 bits (433),  Expect = 0.0
 Identities = 469/487 (96%), Gaps = 0/487 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGTTTTTGGATACGAAATGGATGAACATAGAGCTTCTTCATCGAGAAGACGAAGA  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1    ATGGCGGTTTTTGGATATGAAATGGATGAACATAGAGCTTCTTCATCGAGACGACGAAGA  60

Query  61   TCTTTGTACCACAATCTAGGAGGAGGACGATTTGCTGATATAATATTCTGGAAGAACAAG  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   TCTTTGTACCACAATCTAGGAGGAGGACGATTTGCTGATATAATGTTCTGGAAGAACAAG  120

Query  121  AAACAATCAGGAACAATCTTGGCGGTATTCACATTGATATGGTTCTTGTTCGAAGTGGTT  180
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  121  AAAGAATCAGGAACAATCTTGGGGGTATTCACATTGATATGGTTCTTGTTCGAAGTGGTT  180

Query  181  GAATATCCTTTCATTACTTTCATCTGCCAGATCCTCTTGCTATCCATTTTCATCTTCCTC  240
            |||||||||||||| |||||| |||||||||||||||| |||| ||||||||| ||||||
Sbjct  181  GAATATCCTTTCATCACTTTCCTCTGCCAGATCCTCTTACTATTCATTTTCATATTCCTC  240

Query  241  ATTTGGTCTTACATTGGCTCCTCACAACTAATCCAGAGTAAACCTCCGAGTATTAATGAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATTTGGTCTTACATTGGCTCCTCACAACTAATCCAGAGTAAACCTCCGAGTATTAATGAT  300

Query  301  CTAAGGATTTCGGAATCGACTTGGAGATTCTTGTTCAACAAGATCAATTGGTTCATTATC  360
            ||||||||||||||||||| |||||||||||||||||||||||| || |||||||| |||
Sbjct  301  CTAAGGATTTCGGAATCGAATTGGAGATTCTTGTTCAACAAGATAAACTGGTTCATCATC  360

Query  361  AAATTGTATGATATCTCAAGTGGCAAAGACTTTAGACTCCTTTTTCTGGCCGTTGTTTCA  420
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  361  AAATTGTATGATATTTCAAGTGGCAAAGACTTCAGACTCCTTTTTCTGGCCGTTGTTTCC  420

Query  421  CTATGGATATTATCAGTGGTTGGAAACTATTTCAGCTCTCTAACTCTATTATACATTGGT  480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  421  CTATGGATATTATCAGTGGTTGGAAACTATTTCAGCTCTCTAACTCTATTATACATCGGT  480

Query  481  GAGTCTT  487
            |||||||
Sbjct  481  GAGTCTT  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5