BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315868

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68500.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   361    3e-99


> AT1G68500.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G25422.1); 
Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25702003-25702511 
FORWARD LENGTH=509
Length=509

 Score =  361 bits (195),  Expect = 3e-99
 Identities = 246/270 (91%), Gaps = 6/270 (2%)
 Strand=Plus/Plus

Query  43   GATATGGAGGAAGAAGGGACTGATGATGATGATCACTCATTGGCTGCTGCAGCCATGGCG  102
            ||||||||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct  57   GATATGGAGGAAGAAGGGAC---TGCTGATGATCACTCATTGGCTGCTGCAGCGATGGCG  113

Query  103  GTTGCGGTTGCTGCAGCGGCGGCAACAGCGGCGGAAGAGGAGGAGCAAAGTTGGGGCGGT  162
            ||||| ||||| || || || |||||||| |||||||||||||||||| |||||||||| 
Sbjct  114  GTTGCTGTTGCCGCCGCAGCAGCAACAGCAGCGGAAGAGGAGGAGCAATGTTGGGGCGGC  173

Query  163  GGAGTGGTGGAGGAGATGACGTGGAGCTCTGTGTGGTTGTCTTTTTGGGACGTTGAGTTC  222
            ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  174  GGAGTAGTGGAGGAGATAACGTGGAGCTCTGTGTGGTTGCCTTTTTGGGACGTTGAGTTT  233

Query  223  GTGGGAAGAAACTATGGTATCTTGTTCAATGATGTTGTATGGGACGATGATATTTGGAAC  282
            || ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  234  GTAGGAAGAAACTATGGTGTCTTGTTCAATGATGTTGTTTGGGACGATGATATTTGGAAC  293

Query  283  ATCCACAATCTAACTCATCATTCCTCATAG  312
            ||||||||| ||||||||  | ||||||||
Sbjct  294  ATCCACAATTTAACTCAT--T-CCTCATAG  320


 Score = 75.0 bits (40),  Expect = 4e-13
 Identities = 40/40 (100%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  1   ATGAAGAGACAGAGAAAAGATATGGAGGAAGAAGGGACTG  40
           ||||||||||||||||||||||||||||||||||||||||
Sbjct  39  ATGAAGAGACAGAGAAAAGATATGGAGGAAGAAGGGACTG  78



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5