BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315881

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68630.1 | Symbols:  | PLAC8 family protein | chr1:25768539-...   459    1e-128


> AT1G68630.1 | Symbols:  | PLAC8 family protein | chr1:25768539-25770260 
FORWARD LENGTH=1402
Length=1402

 Score =  459 bits (248),  Expect = 1e-128
 Identities = 274/287 (95%), Gaps = 0/287 (0%)
 Strand=Plus/Plus

Query  128  CTTGTATGAACGCTGGTTTGATTCATCTAGCGTTAGGCTTTGTGGGTTGCAGCTGGCTCT  187
            ||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct  314  CTTGTATGAACGCAGGTTTGATTCATCTAGCGTTAGGCTTTATTGGTTGTAGCTGGCTCT  373

Query  188  ACGCTTTTCCAAGTCGGTCTAGGCTTAGGGAACATTTCGCATTGCCTGAGGAACCATGCC  247
            ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  374  ACGCTTTTCCAAACCGGTCTAGGCTTAGGGAACATTTCGCATTGCCTGAAGAACCATGCC  433

Query  248  GTGACTTTTTAGTCCATCTCTTTTGCACCCCATGTGCTATATGCCAAGAGTCCCGGGAAC  307
            |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct  434  GTGACTTTTTAGTCCATCTCTTTTGCACCCCATGCGCTATCTGCCAAGAGTCCCGAGAAC  493

Query  308  TCAAGAACCGCGGCGCTGACCCTTCTATCGGATGGCTTTCGAATGTAGAGAAATGGAGCC  367
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  494  TCAAGAACCGCGGCGCTGATCCTTCTATCGGATGGCTTTCGAATGTAGAGAAATGGAGCC  553

Query  368  GAGAGAAAGTAACACCTCCCATAGTTGTACCTGGCATGATTCGGTGA  414
            | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  554  GTGAGAAAGTAACACCTCCCATAGTTGTACCTGGCATGATTCGATGA  600


 Score =  207 bits (112),  Expect = 5e-53
 Identities = 122/127 (96%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  1    ATGTACGGGAATGGGCCGGTGTTCAAGGCGGAGGGGACGTCGTTCCGGGATCAACCATAC  60
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  115  ATGTACGGGAATGGGCCGGTGTTTAAGGCGGAGGGGACGTCGTTCCGGGATCAACCATAC  174

Query  61   GCCGAACAGCTTCCTCAGGGACTATGGACCACCGGTCTTTGTGATTGTCACGAAGATGCT  120
            || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct  175  GCGGAACAGCTTCCTCAGGGACTATGGACCACAGGGCTTTGCGATTGTCACGAAGATGCT  234

Query  121  CACATTT  127
            |||||||
Sbjct  235  CACATTT  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5