BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315886

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   361    2e-99


> AT1G68680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 16 growth stages; Has 20 Blast hits to 
20 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:25785506-25786924 FORWARD 
LENGTH=651
Length=651

 Score =  361 bits (195),  Expect = 2e-99
 Identities = 217/228 (95%), Gaps = 0/228 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTCGTCAAGCGATACTTCAAAACCAGTAATGGAGAGGAAGAAGAAAGGAGCTCCG  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  122  ATGGCGTCGTCAAGCGATCCTTCAAAACCAGTAATGGAGAGGAAGAAGAAAGGAGCTCCG  181

Query  61   ATCAAATTCTTGGTCCCTCTCATCTACGCGCCTGCTCTTCCTTTGATTCGGTTGTCTTTG  120
            ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| 
Sbjct  182  ATCAAATTCTTAGTACCTCTCATCTACGCACCTGCGCTTCCTTTGATTCGGTTGTCTTTA  241

Query  121  AGACATAAACCAGTTCTCAGAGACCGTCTCTTCGGTCTTGTCCTCGCCGGTGCTTTTGCT  180
            || ||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct  242  AGGCATAAGCCAGTTCTAAGAGATCGTCTCTTCGGTCTTGTCCTCGTCGGTGCTTTTGCT  301

Query  181  CATGGCTTCTATCTTGTAACGGATATATATGATGCAGAGAGCAAATGA  228
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  CATGGCTTCTATCTTGTAACGGATATATATGATGCAGAGAGCAAATGA  349



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5