BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315891
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68725.1 | Symbols: AGP19, ATAGP19 | arabinogalactan protein... 651 0.0
> AT1G68725.1 | Symbols: AGP19, ATAGP19 | arabinogalactan protein
19 | chr1:25809298-25810130 FORWARD LENGTH=747
Length=747
Score = 651 bits (352), Expect = 0.0
Identities = 563/658 (86%), Gaps = 42/658 (6%)
Strand=Plus/Plus
Query 136 cctccaaccaccactgctcctcctccaaccacagctgctcctccaaccacagctgctcct 195
||||| || ||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 98 CCTCC-ACAACCACTGCTCCGCCTCCAACAACTGCTGCTCCTCCAACCACTGCTGCTCCG 156
Query 196 cctccaacca-cagctgctcc-GCC--TCCAACCACCACTACTCCACCAG--T-TTCAGC 248
|||||||| | || || |||| || | | | | | | | ||||||| | | | |
Sbjct 157 CCTCCAACTACCA-CTACTCCACCCGTTTC-AGCTGCGC-A-GCCACCAGCATCTCCGGT 212
Query 249 TACTCAGCCACCAGCAGTTGCTCCAACTTCATCACCAGCACCAAAAGTTGCACCAGTAAG 308
||| | |||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 213 TACACCTCCACCAGCAGTTACTCCAACTTCACCACCAGCTCCAAAAGTTGCACCAGTAA- 271
Query 309 T-AGCCCCGCTACTCCACCTCCGCAACCACCACAAAGCCCGCCTG-TT----T-C-A--G 358
| |||||||| ||||| ||||| |||||||||||||||||||| | || | | | |
Sbjct 272 TCAGCCCCGCAACTCCGCCTCCACAACCACCACAAAGCCCGCCCGCTTCAGCTCCAACCG 331
Query 359 -CT--CCA--TCC-GTCTcaccaccaccagcaccgacttctcccccacccgcaccagctt 412
|| ||| || || |||||||||||||||||||| |||||||||||| |||||||||
Sbjct 332 TCTCACCACCACCTGTATCACCACCACCAGCACCGACGTCTCCCCCACCCACACCAGCTT 391
Query 413 caccaccacctgcaccag-tatctccaccacccgcaccagcttctccaccagcttcacc- 470
|||||||||||||||||| | |||||||| || ||||||||||| || ||| || ||||
Sbjct 392 CACCACCACCTGCACCAGCT-TCTCCACCTCCTGCACCAGCTTCACCGCCACCTGCACCA 450
Query 471 g-----cca---ccagCACAAGCGCCTA-CACCTATAAGTCTACCACCAGCTCCAGCACC 521
| ||| || | ||||||||| | |||| |||||| |||||||||||||||||||
Sbjct 451 GTTTCCCCACCCCCTGTACAAGCGCC-ATCACCAATAAGTTTACCACCAGCTCCAGCACC 509
Query 522 GGCTCCTGCCAAGCACAAGAGAAAACACAAACACAAAAGACATCACCATGCCCCAGCTCC 581
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 510 GGCTCCTACCAAGCACAAGAGAAAGCACAAACACAAAAGGCATCACCATGCCCCAGCTCC 569
Query 582 AGCACCAATTCCCCCAAGCCCTCCATCTCCTCCAGTTCTAACAGATTCACAGGACACAGC 641
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 570 AGCACCAATTCCCCCAAGCCCTCCATCTCCTCCAGTTCTAACAGATCCACAGGACACGGC 629
Query 642 TCCAGCACCATCACCAAACACAAATGGAGGAAATGCCTTAAATCAGCTGAAAGGAAGAGC 701
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 630 TCCAGCACCATCACCAAACACGAATGGAGGAAATGCCTTAAATCAGCTTAAAGGAAGAGC 689
Query 702 AGTAACGTGGCTCAATACTGGACTAGGAATCCTCTTTCTGCTGGCTATGACAGCCTAA 759
||||| |||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 690 AGTAATGTGGCTCAATACTGGACTAGTAATCCTCTTTCTACTTGCTATGACAGCCTAA 747
Score = 254 bits (137), Expect = 1e-66
Identities = 155/164 (95%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCAAATTCAATCATTTGGTCTCTTCTTTTAGCTTCTGCTCTCATCTCTTCCTTT 60
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAATCAAATTCAATCATTTGGTCTCTTCTTTTGGCTTCTGCTCTCATCTCTTCCTTT 60
Query 61 AGTGCAAATGCACAAGGACCTGCTGCTTCACCGGCaacctccacaaccactgctccgcct 120
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 AGTGTAAATGCACAAGGACCTGCTGCTTCACCAGTAACCTCCACAACCACTGCTCCGCCT 120
Query 121 ccaaccactgctgctcctccaaccaccactgctcctcctccaac 164
||||| |||||||||||||||||||| ||||||| ||||||||
Sbjct 121 CCAACAACTGCTGCTCCTCCAACCACTGCTGCTCCGCCTCCAAC 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5