BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315892

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68730.1 | Symbols:  | Zim17-type zinc finger protein | chr1...   706    0.0  


> AT1G68730.1 | Symbols:  | Zim17-type zinc finger protein | chr1:25810321-25811128 
REVERSE LENGTH=513
Length=513

 Score =  706 bits (382),  Expect = 0.0
 Identities = 475/519 (92%), Gaps = 9/519 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGAATACTGCCGCCGGTTGGTCTCCGGTTTTGCCTCCAATCTATTCTCCGATAAGT  60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||    ||
Sbjct  1    ATGGCGAATACTGCCGCCGGTTGGTCTCCGGTTTTGGCTCCAATCTATTCTCCG----GT  56

Query  61   GCTAACCCAAAGCCAATCAATTTTCACATCTCAGCTTCTTTCTACAAACCTCCTCGTCCC  120
               ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| 
Sbjct  57   --AAACACAAAGCCAATCAATTTTCACTTCTCAGCTTCTTTCTACAAGCCTCCTCGTCCA  114

Query  121  TCGTACCAGCATCAAAACTCTATATCGGCTCTACGCAGGTTGAAAACTACTCGTGTGATA  180
            |  ||| |||| |||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct  115  TTTTACAAGCAGCAAAACCCTATATCGGCTCTACACAGGTCGAAAACTACTCGTGTGATA  174

Query  181  GAGATAGTAACACCCAAGCAAAGGAATCGTTCTGTTTCTGTTTTTGGATCACTCACTGAT  240
            ||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  175  GAGGTAGTAACACCAAAGCAAAGGAATCGTTCTTTTTCTGTTTTTGGATCACTCGCTGAT  234

Query  241  GATTCTAAGTTAAACCCAGATGAAGAATCAAAGGACT-CACA-A-TTAGCTTCTATAGAT  297
            |||||||||||||||||||||||||||||||| || | | || |  ||||||||||||||
Sbjct  235  GATTCTAAGTTAAACCCAGATGAAGAATCAAATGATTCCGCAGAGGTAGCTTCTATAGAT  294

Query  298  ATTAAGTTACCGAGAAGAAGTTTGCTTGTGGAATTTAGTTGTGATTCATGTGGAGAAAGA  357
            |||||| ||||||||||||||||||  |||||||||| |||  |||||||||||||||||
Sbjct  295  ATTAAGCTACCGAGAAGAAGTTTGCAAGTGGAATTTACTTGCAATTCATGTGGAGAAAGA  354

Query  358  ACTAAGCGGCTTATCAATCGGCATGCTTATGAAAATGGCCTTGTCTTTGTTCAGTGTGCA  417
            |||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||
Sbjct  355  ACTAAGCGGCTTATCAATAGGCATGCCTATGAAAAGGGCCTTGTCTTTGTTCAATGTGCA  414

Query  418  GGGTGTCTTCAGCATCATAAACTGGTTGACAATCTTGGTCTCATTGTTGAGTATGATTTC  477
            ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  GGGTGTCTAAAGCATCATAAACTGGTTGACAATCTTGGTCTCATTGTTGAGTATGATTTC  474

Query  478  CGGGAAACCTCCAAGGATTCGGGTACCGATCAAGTTTGA  516
            ||||||||||||||||||| |||||||||||| ||||||
Sbjct  475  CGGGAAACCTCCAAGGATTTGGGTACCGATCACGTTTGA  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5