BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315900
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68800.1 | Symbols: BRC2, TCP12 | TCP domain protein 12 | ch... 1513 0.0
> AT1G68800.1 | Symbols: BRC2, TCP12 | TCP domain protein 12 |
chr1:25847066-25848540 REVERSE LENGTH=1380
Length=1380
Score = 1513 bits (819), Expect = 0.0
Identities = 994/1076 (92%), Gaps = 22/1076 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCCTTCTCTAGACACCAATGGCTATGACCTCTTTGATCCCTTCAATCCCCCA-CA 59
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||
Sbjct 70 ATGTTTCCTTCTCTAGATACCAATGGCTATGACCTCTTTGATCCCTTC-ATTCCCCATCA 128
Query 60 AACAACCATGCTTCCTTCTTTCACCAGTTACATTCAAAGCCCTAGTTCTCACCATCACTA 119
|||||||||| |||||||||||| | | ||||||||||||||| |||||||||||||||
Sbjct 129 AACAACCATGTTTCCTTCTTTCATTACTCACATTCAAAGCCCTAATTCTCACCATCACTA 188
Query 120 CTCTTCGCCATCTTTTCCTTTCTC-TCCAGATTTTCTTGACAGTTTTAATGAATCCTTGT 178
||||||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||| |
Sbjct 189 CTCTTCGCCTTCTTTTCCTTTCTCTTCC-GATTTTCTTGAGAGTTTTGATGAATCCTTCT 247
Query 179 TGATAAACCAATTCTTGTTACAGCAACAAGATGCAGCAGCAAATGTTGTTGAATCTCCAA 238
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 248 TGATAAACCAATTCTTGTTACAGCAGCAAGATGTAGCAGCAAATGTTGTTGAATCTCCTT 307
Query 239 GAAAACTTTGCAAGAAGCTTCAGCTAAAGAATAATAATGAGAAGTGTGTTGATGGAACCA 298
| ||| |||||||||||||| |||| ||||| || |||||||||||||||||||||| ||
Sbjct 308 GGAAATTTTGCAAGAAGCTTGAGCTTAAGAAGAAGAATGAGAAGTGTGTTGATGGAAGCA 367
Query 299 CCTCAGAACAAGTTCCACGGAGAAGAACGGCCAAGAAAAGGGACAGACATAGTAAGATCT 358
||||| || | |||| | ||||||| |||| ||| ||||||||||| |||||||||||||
Sbjct 368 CCTCACAAGAGGTTCAATGGAGAAGGACGGTCAAAAAAAGGGACAGGCATAGTAAGATCT 427
Query 359 GCACTGCTCAAGGTCCTAGAGACCGGAGGATGAGGCTGTCTCTTCAGATTGCTCGCAAGT 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GCACGGCTCAAGGTCCTAGAGACCGGAGGATGAGGCTGTCTCTTCAGATTGCTCGCAAGT 487
Query 419 TTTTCGATCTTCAAGACATGTTGGGTTTCGACAAGGCGAGCAAGACGATTGAATGGCTTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTTTCGATCTTCAAGACATGTTGGGTTTCGACAAGGCGAGCAAGACGATTGAATGGCTTT 547
Query 479 TCTCCAAATCAAAGGGTTCCATCAAACAACTTAAAGAAAGAGTGGCTGCATCGGAAGGAG 538
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCTCCAAATCAAAGACTTCCATCAAACAACTTAAAGAAAGAGTGGCTGCATCGGAAGGAG 607
Query 539 GAGGACAGGATGAACATCTCCAGGTTGATGAAAAGGAAAAGGATGAGACATTGAAGGTGA 598
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 608 GAGGAAAGGATGAACATCTCCAGGTTGATGAAAAGGAAAAGGATGAGACACTGAAGTTGA 667
Query 599 AAGTCTCAaagagaagaacaaagactatggagagctcttgtaagactaaagagtcgagag 658
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 668 GAGTCTCAAAGAGAAGAACAAAGACTATGGAGAGCTCTTTTAAGACTAAAGAGTCGAGAG 727
Query 659 agagagctagaaaacgagcaagagagagaacaatggcaaagatgaagatgagaTTATTTG 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AGAGAGCTAGAAAGCGAGCAAGAGAGAGAACAATGGCAAAGATGAAGATGAGATTATTTG 787
Query 719 AGACCTCGGAAACAATTTCAGATCCTCATCAAGAAACTAGAGATCAGATCAAGATAACCA 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 788 AGACCTCGGAAACAATTTCAGATCCTCATCAAGAAACTAGAGA---GATCAAGATAACCA 844
Query 779 ATGGTGAACAATTACTAGAAAGGGAACATAAAGAACAAGAATGGAGTCATACTAATG-TG 837
|||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||| ||
Sbjct 845 ATGGTGTACAATTACTAGAAAAGGAAAATAAAGAACAAGAATGGAGTAATACTAATGATG 904
Query 838 A--ACATGGTTGAGTATCAAATGGATTCTGTGAGCATCATAGAGAAGTTTCTTGGACTAA 895
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TTCACATGGTAGAGTATCAAATGGATTCTGTGAGCATCATAGAGAAGTTTCTTGGACTAA 964
Query 896 CCAGCGACTCTAGCACCTCTTCCATCTTTGGTGACTCCGAGGAATGTCACACAAGTCTTA 955
|||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 965 CCAGTGACTCTAGCTCCTCTTCCATTTTTGGTGACTCCGAGGAATGTTACACAAGTCTTA 1024
Query 956 GCTCAATAATAGGAATGACGACACCAAGGGAACACAACACAACGG---TAG-A----TG- 1006
| ||| ||| ||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct 1025 GTTCAGTAAGAGGAATGTCGACACCAAGGGAACACAACACAACTTCAATAGCAACGGTGG 1084
Query 1007 A--AG-AGAAAAGCCCTATTTCATCTTTTTCTCTATATGATTATCTCTGCTACTGA 1059
| || |||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1085 ATGAGGAGAAAAGCCCCATATCATCTTTCTCTCTATATGATTATCTCTGCTACTGA 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5