BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315903
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68830.1 | Symbols: STN7 | STT7 homolog STN7 | chr1:25872445... 2820 0.0
> AT1G68830.1 | Symbols: STN7 | STT7 homolog STN7 | chr1:25872445-25875550
REVERSE LENGTH=1975
Length=1975
Score = 2820 bits (1527), Expect = 0.0
Identities = 1636/1690 (97%), Gaps = 2/1690 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAATATCTCCGGGAGGAGCTTACATCGGAACTCCCTCACCGTTTCTCGGCAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ATGGCTACAATATCTCCGGGAGGAGCTTACATCGGAACTCCCTCACCGTTTCTCGGCAAA 137
Query 61 AAACTCAAACATTTCTCTTTAACTTCACCAATTTCGACTTCTAAACCAACGGTTAAGCTC 120
|||||||||| ||||||| |||||||||| |||| || || |||||||||||||||||||
Sbjct 138 AAACTCAAACCTTTCTCTCTAACTTCACCGATTTTGAGTTTTAAACCAACGGTTAAGCTC 197
Query 121 AATTCCGA-TTGTCGCGCTCAATTGATCGATACGGTTCACAATCTCTTCATCGGAGTTGG 179
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AATTCC-AGTTGTCGCGCTCAATTGATCGATACGGTTCACAATCTCTTCATCGGAGTTGG 256
Query 180 AGTCGGACTTCCATGTACGGTTATGGAGTGTGGTGATATGATCTATCGCAGTACTTTGCC 239
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 257 AGTTGGACTTCCATGTACGGTTATGGAGTGTGGTGATATGATATATCGAAGTACTTTGCC 316
Query 240 GAAATCGAATGGTTTAACGATTACTGCTCCTGGAGTGGCGTTAGCTCTCACTGCTCTCTC 299
|||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 317 GAAATCTAATGGTTTAACGATCACTGCTCCTGGAGTAGCTTTAGCTCTCACTGCTCTTTC 376
Query 300 GTATCTATGGGCAACACCTGGTGTTGCTCCTGGGTTTTTCGATATGTTTGTTCTTGCTTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GTATCTATGGGCAACACCTGGTGTTGCTCCTGGGTTTTTCGATATGTTTGTTCTTGCTTT 436
Query 360 CGTTGAGAGATTGTTTCGACCTACTTTTAGAAAGGATGATTTTGTTGTTGGGAAGAAATT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TGTTGAGAGATTGTTTCGACCTACTTTTAGAAAGGATGATTTTGTTGTTGGGAAGAAATT 496
Query 420 AGGGGAAGGTTCTTTTGGTGTTGTTTATAAAGTCTCATTATCCAAAAAACGTTTTAATGA 479
|||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct 497 AGGGGAAGGTTCTTTTGGTGTTGTTTATAAAGTCTCATTATCTAAGAAACGTTCTAATGA 556
Query 480 GGAGGGTGAGTTTGTATTGAAGAAGGCGACTGAATATGGTGCGGTGGAAATTTGGATGAA 539
||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 557 GGAGGGTGAGTATGTATTGAAGAAGGCGACTGAGTATGGTGCGGTGGAGATTTGGATGAA 616
Query 540 TGAGAGGGTTCGAAGAGCTTGTGGGAATAGCTGTGCTGATTTTGTTTATGGATTTCTCGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CGAGAGGGTTCGAAGAGCTTGTGGGAATAGCTGTGCTGATTTTGTTTATGGATTTCTCGA 676
Query 600 TAAGTCTTCGAAGAAGGGACCTGAGTATTGGCTGTTATGGAAATATGAAGGAGAATCAAC 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TAAGTCTTCAAAGAAGGGACCTGAGTATTGGCTGTTATGGAAATATGAAGGAGAATCAAC 736
Query 660 ACTTGCTGGTTTGATGCAGAGTAAAGAATTCCCTTATAATGTAGAAACTATCATCCTTGG 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 737 ACTTGCTGGTTTGATGCAGAGTAAAGAATTTCCTTATAATGTAGAAACTATCATCCTTGG 796
Query 720 GAAAGTACAAGATTTGCCTAAAGGGTTGGAAAGAGAAAACAAAATTATTCAGACTATCAT 779
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 797 GAAAGTTCAAGACTTGCCTAAAGGGTTGGAACGAGAAAACAAAATTATTCAGACTATCAT 856
Query 780 GAGACAACTCTTGTTTGCATTGGATGGTCTTCACTCAACTGGGATTATCCATAGGGATGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GAGACAACTCTTGTTTGCATTGGATGGTCTTCACTCAACTGGGATTATCCATAGGGATGT 916
Query 840 TAAGCCTCAGAACATTATTTTCTCAGAAGGTTCTCGTTCTTTCAAGATTATCGATCTTGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TAAGCCTCAGAACATTATTTTCTCAGAAGGTTCTCGTTCTTTCAAGATTATCGATCTTGG 976
Query 900 AGCTGCAGCTGATTTGAGAGTGGGAATTAACTACATTCCAAAAGAGTTTCTCCTGGATCC 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 977 AGCTGCAGCTGATTTGAGAGTGGGAATTAACTACATTCCAAAAGAGTTTCTCCTTGATCC 1036
Query 960 AAGGTATGCAGCACCTGAGCAATACATCATGAGCACACAAACTCCATCTGCACCTTCAGC 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1037 AAGGTATGCAGCACCTGAGCAATACATCATGAGCACCCAAACTCCATCTGCACCTTCAGC 1096
Query 1020 ACCTGTTGCAGCTGCACTTTCCCCTGTCCTGTGGCAGATGAATTTGCCAGATAGGTTCGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 ACCTGTTGCAGCTGCACTTTCCCCTGTCCTGTGGCAGATGAATTTGCCAGATAGGTTCGA 1156
Query 1080 TATCTATAGCATTGGCCTCATCTTCCTTCAAATGGCATTCCCATCCTTACGAACTGACAG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1157 TATCTATAGCATTGGCCTCATCTTCCTTCAAATGGCATTCCCATCCTTACGATCTGACAG 1216
Query 1140 CAACCTCATTCAGTTCAACCGCCAGCTGAAAAGATGTGACTATGACTTAACTGCTTGGAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1217 CAACCTCATTCAGTTCAACCGCCAGCTGAAAAGATGTGACTATGACTTAACAGCTTGGAG 1276
Query 1200 AAAACTAGTGGAGCCGCGTGCAAGCGCTGATCTCCGTAGAGGGTTCGAGCTAGTAGATCT 1259
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1277 AAAACTAGTGGAGCCTCGTGCAAGCGCTGATCTCCGTAGAGGGTTCGAGCTTGTAGATCT 1336
Query 1260 AGACGGTGGAATCGGATGGGAACTTCTTACATCGATGGTCCGGTACAAAGCAAGACAAAG 1319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1337 AGACGGTGGAATCGGATGGGAACTTCTAACATCGATGGTCCGGTACAAAGCAAGACAAAG 1396
Query 1320 AATCAGCGCAAAAGCAGCTCTTGCTCACCCATATTTCGATAGACAAGGATTACTTGCGTT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1397 AATCAGCGCAAAAGCAGCTCTTGCTCACCCATATTTCGATAGACAAGGATTGCTCGCGTT 1456
Query 1380 GTCGGTCATGCAGAACTTGAGGATGCAGTACTTCAGGGCTACACAACAGGACTACAGTGA 1439
||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1457 GTCCGTCATGCAAAACTTGAGAATGCAATACTTCAGGGCTACACAACAGGACTACAGTGA 1516
Query 1440 AGCAGCAAATTGGGTGATTCAGTTAATGGCAAAAAATGGGACAGAAAAAGATGGTGGATT 1499
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 AGCAGCAAATTGGGTAATACAGTTAATGGCAAAAAATGGGACAGAAAAAGATGGTGGATT 1576
Query 1500 CACAGAAACGCAACTCCAAGAACTCAGGGAGAAAGAGCCTCGAAAGAAGGCGAATGCGCA 1559
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1577 CACAGAAACACAACTCCAAGAACTCAGGGAGAAAGAGCCTCGAAAGAAAGCGAATGCGCA 1636
Query 1560 AAGAAACGCTCTTGCATCAGCACTTAGGCTTCAGAGGAAGCTTGTGAAAACAGTTACTGA 1619
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1637 AAGAAATGCTCTTGCATCAGCACTTAGGCTTCAGAGGAAGCTTGTGAAAACAGTCACTGA 1696
Query 1620 GACTATTGATGAGTTTAGCGATGGCCGAAAGACCGTGTGGTGGAACAGATGGATCCCCAG 1679
||| || |||||| ||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1697 GACCATAGATGAGATTAGCGATGGCCGCAAGACCGTTTGGTGGAACCGATGGATCCCCAG 1756
Query 1680 AGAGGAGTGA 1689
||||||||||
Sbjct 1757 AGAGGAGTGA 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5