BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315930
Length=3456
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69220.1 | Symbols: SIK1 | Protein kinase superfamily protei... 2931 0.0
AT1G69210.1 | Symbols: | Uncharacterised protein family UPF009... 758 0.0
> AT1G69220.1 | Symbols: SIK1 | Protein kinase superfamily protein
| chr1:26020089-26026171 REVERSE LENGTH=2772
Length=2772
Score = 2931 bits (1587), Expect = 0.0
Identities = 1707/1766 (97%), Gaps = 3/1766 (0%)
Strand=Plus/Plus
Query 1 ATGGATCATAACTCGCCGAGATCTCGTCGGAGCCGGAAACCGGAGCCCAAACCCGACATA 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 53 ATGGATCATAACTCGCCGAAATCTCGTCGGAGCCGGAAACCGGAGCCCAAACCTGACATA 112
Query 61 TACTCCACTTTCGTAGTCCACTCCGACTCCGATTCTGATCAAGGTCGAAATCGAGATAAA 120
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 113 TACTCCACTTTCGTAGTCCACTCCGACTCTGATTCTGATCAAGGTCGAGATCGAGACAAA 172
Query 121 CGTAAAGCCAAACCTGAGGAAGACGAAAATGTCGATTTATACGCTACAATGGTTTATAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 173 CGTAAAGCCAAACCTGAGGAAGACGAAAATGTCGATTTATACGCTACAATGGTCTACAAA 232
Query 181 GGCGATAGTGACGGAGAAGGAGAGGAAGACGATGAAGACGATTCTATGCTTCCTCCTCTT 240
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 233 GGCGATAGTGACGGAGAAGGAGAGGAAGATGATGATGACGATTCTATGCTTCCTCCTCTT 292
Query 241 CTCAAGCGTCTTCCCAAAGATTTCGGAGGCGGCGCGTCGCTCGATTACGACGACGACGAC 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CTCAAGCGTCTTCCCAAGGATTTCGGAGGCGGCGCGTCGCTCGATTACGACGACGACGAC 352
Query 301 GGTGACGAAACCGGAGATTTCGGTACGATGATTGTGAAAACAGATCGGAGTAGTCATAGT 360
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GGTGATGAATCTGGAGATTTCGGTACGATGATTGTGAAAACAGATCGGAGTAGTCATAGT 412
Query 361 ---AAGAACAGTCCGTACTCGTCCAAACCGCGAATGGGAGTTAGTCCTAGGAGGAGAGCG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AAGAAGAACAGTCCGTACTCGTCCAAACCGCGAATGGGAGTTAGTCCTAGGAGGAGAGCG 472
Query 418 AGAGGTGGAGATGAGGAATCTTCCGATGAGGAAGACGAAGAAGAAGAAGATGATGATGAT 477
||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 473 AGAGGCGGAGATGAGGAATCTTCTGATGAAGAAGACGAAGAAGAAGATGATGATGACGAC 532
Query 478 GACGGAGAGTACGGTACGTTTGTTGTGAAATCTTCGTCTAAAAAGGGAAAGAATAAAGAG 537
|||||||| |||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 533 GACGGAGACTACGGTACGTTTGTTGTGAAATCTAAGGATAAAAAGGGAAAGAAGAAAGAC 592
Query 538 AAGGAGATTGATATGTCAACTATGGGAAGAGCTGTTGCGAGTATGCAGAAATCAAATTTT 597
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAGGAGATTGATATGACAACTATGGGAAGAGCTGTTGCGAGTATGCAGAAATCAAATTTT 652
Query 598 GGTGGTAAGACTCGGAAATTGGATCCTTCCTCTTCTTCTTCCAAGCTTCACGGTGAAGAT 657
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 653 GGTGGTAAGACTCGGAAATTGGATCCTTCCTCTTCTTCTTCGAAACTTCACGGTGAAGAT 712
Query 658 AATCGGAAAATGCAGCAGCAGAACAGTAAGATGTCGACTACGTCTCTTCCGGATAGCATT 717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 713 AATCGGAAAATGCAGCAGCAAAACAGTAAGATGTCGACTACGTCTCTTCCGGATAGCATT 772
Query 718 ACTAGAGAAGATCCAACCACCAAATACGAATTCCTCAATGAACTTGGGAAAGGATCATAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 ACTAGAGAAGATCCAACCACCAAATACGAATTCCTCAATGAACTTGGGAAAGGATCATAT 832
Query 778 GGATCTGTATACAAGGCAAGAGATTTGAAAACATCGGAGATTGTTGCTGTGAAAGTCATA 837
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 GGATCTGTATACAAGGCAAGAGATTTGAAAACATCAGAGATTGTTGCTGTGAAAGTCATA 892
Query 838 TCACTTACTGAAGGGGAGGAGGGATATGAAGAGATCCGGGGAGAAATTGAGATGCTGCAG 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 893 TCACTTACTGAAGGGGAGGAGGGGTATGAAGAGATCCGGGGAGAAATTGAGATGCTGCAG 952
Query 898 CAATGTAACCATCCGAATGTTGTCCGCTACCTTGGGAGTTACCAAGGAGAAGATTATCTT 957
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 953 CAATGTAATCATCCTAATGTTGTCCGCTACCTAGGGAGTTACCAAGGAGAAGATTATCTT 1012
Query 958 TGGATAGTGATGGAGTATTGTGGAGGTGGAAGTGTTGCTGATCTTATGAATGTTACTGAG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGATAGTGATGGAGTATTGTGGAGGTGGAAGTGTTGCTGATCTTATGAATGTTACTGAG 1072
Query 1018 GAGGCGTTGGAGGAGTATCAGATAGCATATATATGTCGGGAGGCGTTGAAGGGCCTTGCA 1077
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GAGGCGTTAGAGGAGTATCAGATAGCATATATATGTCGGGAGGCGTTGAAGGGCCTTGCA 1132
Query 1078 TACTTGCACTCAATTTATAAAGTCCATAGAGACATTAAAGGTGGAAATATCTTGTTAACT 1137
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TACTTGCACTCAATATATAAAGTCCATAGAGACATTAAAGGTGGAAATATCTTGTTAACT 1192
Query 1138 GAACAAGGAGAGGTCAAGTTGGGTGACTTTGGGGTTGCAGCTCAACTTACGCGGACTATG 1197
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1193 GAACAAGGAGAGGTCAAGTTGGGTGACTTTGGGGTTGCAGCTCAACTTACTCGCACTATG 1252
Query 1198 TCGAAGCGAAACACGTTCATTGGGACTCCACATTGGATGGCCCCAGAGGTTATTCAGGAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TCGAAGCGAAACACGTTCATTGGGACTCCACATTGGATGGCCCCAGAGGTTATTCAGGAA 1312
Query 1258 AATCGTTATGATGGGAAGGTGGATGTATGGGCTCTTGGTGTTTCAGCTATTGAGATGGCA 1317
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AATCGTTATGATGGGAAGGTTGATGTATGGGCTCTTGGTGTTTCAGCTATTGAGATGGCA 1372
Query 1318 GAGGGGCTTCCTCCAAGATCAGCAGTTCATCCGATGAGGGTTTTGTTCATGATATCCATC 1377
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGGGGCTCCCTCCAAGATCATCAGTTCATCCGATGAGGGTTTTGTTCATGATATCCATC 1432
Query 1378 GAGCCAGCTCCGATGCTCGAGGATAAAGAAAAATGGTCCCTGGTCTTTCATGATTTTGTT 1437
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAGCCAGCTCCAATGCTCGAGGATAAAGAAAAATGGTCCCTGGTCTTTCATGATTTTGTT 1492
Query 1438 GCAAAGTGCCTTACAAAGGAACCACGTCTTCGCCCAACTGCAGCTGAGATGCTTAAGCAC 1497
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GCAAAGTGCCTCACAAAGGAACCACGTCTTCGCCCAACTGCAGCTGAGATGCTTAAGCAC 1552
Query 1498 AAATTTGTTGAGAGATGTAAAACTGGGGCTTCCGCAATGTCGCCAAAGATTGAGAAGTCC 1557
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1553 AAATTTGTTGAGAGATGTAAAACTGGGGCTTCTGCAATGTCGCCAAAGATTGAGAAGTCC 1612
Query 1558 AGACAAATCAGAGCTGTAATGGCTCTGCAAGCGCAAAGTGTTGTCGCACCTTCTTCGGAG 1617
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1613 AGACAAATCAGAGCTACAATGGCTCTGCAAGCGCAAAGTGTTGTCGCACCTTCTTTGGAG 1672
Query 1618 GACACTTCAACACTGGGTCCAAAATCAAATGAAGAGGTAGGAATTACTGTTCCATCTAAA 1677
|||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct 1673 GACACTTCAACACTGGGTCCAAAATCAAGCGAGGAGCTTGGAATTACTGTTCCATCTAAA 1732
Query 1678 CCTCCTCAAAATTCCACCGAAGCACCTCTAACCGGCACCCTGAATCGGCAGCATATAACT 1737
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1733 CCTCCTCAAAATTCGACCGAAGCACCTCTAACCAGCACCCTGAATCGGCAGCATATTACT 1792
Query 1738 GGCAACACTGTGTTGGCTGGAGAAGG 1763
||||||||||||||||||||||||||
Sbjct 1793 GGCAACACTGTGTTGGCTGGAGAAGG 1818
Score = 1177 bits (637), Expect = 0.0
Identities = 716/753 (95%), Gaps = 10/753 (1%)
Strand=Plus/Plus
Query 1790 GTGGTGACTTTGGAACTATGATCGTTCATGGTGAGGATGAGGCAGAGGAGAGTGACTCCA 1849
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1818 GTGGTGACTTCGGAACTATGATCGTTCATGGTGAGGATGAGACAGAGGAGAGTGACTCCA 1877
Query 1850 GGTCTCAACTTGTCAAAGAGAAAGAAGAATCTTCATCTTCTCAGGTTGAAGGTGTTTCTC 1909
||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1878 GGTCTCAGCTTGTC--AGAGAAA-AAGAATCTTCATCTTCTCAGTTTGAAGGTGTTCCTC 1934
Query 1910 GCGAAGTCTCAGGAGAAGAATTACCTGACTCATGGATACATGACAAAAAGAATCCTCCGG 1969
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1935 GCGAATTCCCAGGAGAAGAATTACCTGACTCATGGATACATGACAAAAAGAAGCCTCCGG 1994
Query 1970 CTACCGATCTTCCAGTTGAAGCTTCGACTTCACAGAGTATGCAGGCAAGTTCATCTCATG 2029
||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1995 CTATTGATCTTCCAGTTGAAGCTTCGATTTCACAGAGCATGCAGGCAAGTTCATCTCATG 2054
Query 2030 AGCATAGAACCAAGCTAAATAACATAGCTGGAATACAGACCGAAGGTGGCAGTGATGCAA 2089
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2055 AGCATAGAACCAAGCTACATAACATAGCTGGAACACAGATGGAAGGTGGCAGTGATGCAA 2114
Query 2090 GTGGTAGTACCTTGAAAAATGAAACTGTTGGCAGGAAAGCTTTTGCTTTGCAAGATAAGT 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 GTGGTAGTACCTTGAAAAATGAAACTGTTGGCAGGAAAGCTTTTGCTTTGCAAGATAAGT 2174
Query 2150 TATGGTCAATCTACGCAGCTGGAAACACAGTACCTATACCATTCTTGAGAGCAACAGATA 2209
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2175 TATGGTCAATCTACGCAGCTGGAAACACAGTACCGATACCGTTCTTGAGAGCAACAGATA 2234
Query 2210 TATCCCCAATTGCACTCTTGTCAGAGAACATGATCGGAGGCATGCAACAAGATGGGAATG 2269
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 TATCCCCAATCGCACTCTTGTCAGAGAACATGATCGGAGGCATGCAACAAGATGGGAATG 2294
Query 2270 GAACTGTAGCCGTCGAAGCACTTCAGGAGCTCTTCACTTCT---GATCCCCAATCCAGAA 2326
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2295 GAACTGTAGCCGTCGAAGCACTTCAGGAGCTCTTCACTTCTTCTGATCCCCAATCCAAAA 2354
Query 2327 AGGGTCGACGTGGACAAAACGAGATGCCTCTTCCTCCAAGCGTATACCAAAGACTGACAA 2386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2355 AGGGCCGACGTGGACAAAACGAGATGCCTCTTCCTCCAAGCGTATACCAAAGACTGACAA 2414
Query 2387 CAAGCTCTTCTCTAATGAATCTTGCACAAGTTTTAGCATACCACAGAGCGTACGTGTTAC 2446
||||||||||||| ||||| ||||||||||||||||| ||||||||||||| || | ||
Sbjct 2415 CAAGCTCTTCTCTGATGAACCTTGCACAAGTTTTAGCCTACCACAGAGCGT--GT-T-AC 2470
Query 2447 GAGGAAATGCCGCTGCAGGAATTGCAAGCAACGCAGGAGCAGCAAACCATTCAAAATCTA 2506
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2471 GAGGAAATGCCGCTGCAGGAATTGCAAGCAACGCAGGAGCAGCAAACCATTCAGAATCTG 2530
Query 2507 TGCGATACTCTTCGCACTATCCTCCGCCTCTAA 2539
|||||||||||||||||||| ||||||||||||
Sbjct 2531 TGCGATACTCTTCGCACTATTCTCCGCCTCTAA 2563
> AT1G69210.1 | Symbols: | Uncharacterised protein family UPF0090
| chr1:26018438-26020058 REVERSE LENGTH=1063
Length=1063
Score = 758 bits (410), Expect = 0.0
Identities = 493/531 (93%), Gaps = 14/531 (3%)
Strand=Plus/Plus
Query 2554 TTTTCTTCTTCCTTACTACTT-CAAA-A-GACG--A---C-T-C-C-TCCTCGCTAtttt 2601
||||||||||||||||||||| |||| | |||| | | | | | |||||||||||||
Sbjct 91 TTTTCTTCTTCCTTACTACTTCCAAAGACGACGACACGTCTTACTCTTCCTCGCTATTTT 150
Query 2602 cctttctcttcttcgatctctaggttttcttcttcgtcttcttctccttctccttcAGTT 2661
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 151 CCTTTCTCTTCTTCGATCTCTACGTTTTCTTCTTCGTCTTCTTCTCCTTCTCCTTCAGCT 210
Query 2662 CGACCGCCAAAATCCGCCGGTAGTAATGGCGACGAAGAAGACACTTTTGAATATAAAACA 2721
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 211 CGACCGCCAAAAACCGCCGGTAGTAATGGCGACGAAGAAGACACTTTTGAATATAAAGCA 270
Query 2722 ACTGATGATGTTGAGGTCATAGAAGATTGGGAAGAAGAAGAAGATGAGGAAGTTGAATCT 2781
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 271 ACTGATGATGTTGAGGTCATAGAAGATTGGGAAGAAGACGAAGATGAGGATGTTGAATCA 330
Query 2782 TATCTTGGTGACGGAGGAGATGGTGGTGGAATTGTTCTTCGAGATGT-GCCATGGGGTGA 2840
| |||||||| ||||||||||||||||||||||||||| || ||| | ||||||||||
Sbjct 331 CAGCTTGGTGATGGAGGAGATGGTGGTGGAATTGTTCTTAAAGGTGTAG-CATGGGGTGA 389
Query 2841 AAGAGTTCTTTCTATTGCTGCAGAAGTTTTGAAGCAGTCTGAGGAAGATTTGGAATTGTT 2900
||||||||| ||||| |||||| |||||||||||||||||||| |||| |||||||||||
Sbjct 390 AAGAGTTCTCTCTATAGCTGCACAAGTTTTGAAGCAGTCTGAGAAAGACTTGGAATTGTT 449
Query 2901 TGCTTTCAAAACTTCACCGCGTGGATATATATATGTCAGACTAGACAAACTCTCGAATGA 2960
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 450 TGCTTTCAAAACTTCACCGCGTGGATATATATACGTCAGACTAGACAAACTCTCCACTGA 509
Query 2961 ATATGGATGTCCTACCATGGATAAGCTTGAGGAATTTAGTCGAGAATTTAAGAAAAGACT 3020
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 510 ATATGGATGTCCTACCATGGATGAGCTTGAGGAATTTAGTCGAGAATTTAAGAAAAGACT 569
Query 3021 AGATGATGCTGGGGCTGCAAAACTAATCCCAGAGGATCTAGCCCTTGAGGT 3071
||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 570 AGATGATGCTGGGGCTGAAAAAGTAATCCCAGAGGATCTAGCCCTTGAGGT 620
Score = 464 bits (251), Expect = 2e-129
Identities = 287/304 (94%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 3155 AGGTGTCATCTCCAGGAGCTGAGAGGCTGCTGAGAGTCCCAGAGGACTTACCCCGATTCA 3214
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 617 AGGTGTCATCTCCAGGAGCGGAGAGGCTACTGAGAGTCCCAGAGGACTTGCCCCGATTCA 676
Query 3215 AGGATATGCCAATGACAGTAAGCTATGTAGAGGAAACCAACTCGAGGAAAGTAGTGAAA- 3273
||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||
Sbjct 677 AGGATATGCCAATGACAGTAAGCTATGTAGAAGAAACAAACTCGAGGAAAGCAGT-AAAG 735
Query 3274 ACTGCAGTGTTTCTCTTGGAGTCTATCGATGCAGAATCGGATAACTGTGTCTGGAAATTA 3333
| || |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 736 AGTGGAGTGTTCCTCTTGGAGTCTATAGATGCAGAATCAGATAACTGTGTCTGGAAATTA 795
Query 3334 GCAGATGTGAA-GGAGAACAGAGATCCCGAAAGCAAAGGCAGACCGTTAAGCCGGAAACA 3392
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GCAGATGT-AAGGGAGAACAGAGATCCCGAAAGCAAAGGCAGACCGTTAAGCCGGAAACA 854
Query 3393 AAAGGACTTGAGAATCACACTGCCTTTCACAGATCACAGGAAGATAAATCTCTACTTGGA 3452
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 855 AAAGGACTTGAGAATCACACTGCCTTTCGCAGATCACAAGAAGATAAATCTCTACTTGGA 914
Query 3453 TTAG 3456
||||
Sbjct 915 TTAG 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 172022447547
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5