BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315935

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69325.1 | Symbols:  | Remorin family protein | chr1:2606320...   555    2e-157
  AT1G69320.1 | Symbols: CLE10 | CLAVATA3/ESR-RELATED 10 | chr1:2...   399    1e-110


> AT1G69325.1 | Symbols:  | Remorin family protein | chr1:26063205-26063736 
FORWARD LENGTH=363
Length=363

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 345/366 (94%), Gaps = 6/366 (2%)
 Strand=Plus/Plus

Query  271  ATGAACG-ATACCAGGGAGCAACGAGCAAAACCTGAACCA-ATGGCAGCTGTGGTGGATC  328
            ||||||| || |||  | ||||||||| ||||||||| || ||||||||||| |||||||
Sbjct  1    ATGAACGAAT-CCACAGTGCAACGAGCGAAACCTGAA-CATATGGCAGCTGTTGTGGATC  58

Query  329  AATGGAAGGAAACAGAGCTAAGCAAATCGAGAAACAAGTACGAGAAGCTAAGTGAGAAGA  388
            ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct  59   AATGGAAGGAAACAGAGATAAGCAAATCGAGAAAGAAGTACGAGAAGCTAAGTGAGAAGA  118

Query  389  TTGTGTCATGGgaagataagaagaggaaaaaggcaaagagaaagcttcatagaacagaga  448
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  119  TTGTGTCATGGGAAGATAAGAAGAGGAAAAAGGCAAAGAGAAAACTTCATAGAACAGAGA  178

Query  449  ga-gctgtagagaaaaCAAAGTTGAAGGCGGTCCAGAGGTTCACGGACGAAAATGAACGT  507
            || | |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||
Sbjct  179  GAAG-TGTAGAGAAAACAAAGTTGAAGGCGACCCAGAGGTTCAGGGACGAAAATGAACGT  237

Query  508  ATTGAGATCATCGTTGCAAGTGCAAGAGCACATGCATATGAGAGTCGAATGAAAGAAGAG  567
            |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  238  ATTGAGATTATCGTTGCAAGTGCAAGAGCACATGCGTATGAGAGTCGAATAAAAGAAGAG  297

Query  568  TTGAAGGTTAAGGAGAAAGCAAACCTCATGAGAACAACTGGTAGGAAACCCTCTGCATGC  627
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  298  TTGAAGGTTAAGGAGAAAGCAAACCTCATGAGAACAACTGGTAGGAAACCCTCTACATGC  357

Query  628  CTCTGA  633
            ||||||
Sbjct  358  CTCTGA  363


> AT1G69320.1 | Symbols: CLE10 | CLAVATA3/ESR-RELATED 10 | chr1:26061862-26062514 
FORWARD LENGTH=653
Length=653

 Score =  399 bits (216),  Expect = 1e-110
 Identities = 254/271 (94%), Gaps = 7/271 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGATTAGCCGGAACAGTCCGATCAATATCCTCATCGTCTTCTTCCTTC-TAGCGAC  59
            ||||||| || ||||||| |||||||||| |||||||||||||||||||||| || ||||
Sbjct  64   ATGAAGACTAACCGGAACCGTCCGATCAACATCCTCATCGTCTTCTTCCTTCTTA-CGAC  122

Query  60   CGC-A-AG-AGCAACAAGAAACTGGACTAACCGAACCCACCGAACCGTTCCTAGGGTTCA  116
            ||| | || |||||||||||||||||| |||||||| ||||||||||| |||| ||||||
Sbjct  123  CGCAAGAGCAGCAACAAGAAACTGGACCAACCGAACTCACCGAACCGTCCCTAAGGTTCA  182

Query  117  ACACGCGTACTACGCATATCCTCACCGTTCATGCGAATCTTTCTCTCGTCCATACGCACG  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  ACACGCGTACTACGCATATCCTCACCGTTCATGCGAATCTTTCTCTCGTCCATACGCACG  242

Query  177  CTCTATGTGCATTGAGCTCGAAAGAATCCACAGAAGCAGTCGACAACCG-TTGTTCTCTC  235
            ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  243  CTCTATGTGCATTGAGCTCGAAAGAATCCACAGAAGCAGTCGACAACCGCTT-TTCTCTC  301

Query  236  CTCCACCTCCTTCGACGGAGATTGATCAAAG  266
            |||| |||||| |||||||||||||||||||
Sbjct  302  CTCCGCCTCCTCCGACGGAGATTGATCAAAG  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30542361376


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5